Wall clock time and date at job start Mon Mar 30 2020 04:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 11 11 O 1.42905 * 109.46817 * 300.00159 * 9 7 2 12 12 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 13 13 C 1.50695 * 109.47170 * 184.99968 * 12 9 7 14 14 N 1.31130 * 126.55050 * 89.70797 * 13 12 9 15 15 C 1.34496 * 105.61439 * 179.91639 * 14 13 12 16 16 C 1.50702 * 126.28942 * 180.12786 * 15 14 13 17 17 C 1.53000 * 109.47134 * 270.24418 * 16 15 14 18 18 C 1.54263 * 110.03035 * 292.16417 * 17 16 15 19 19 C 1.54894 * 104.19619 * 217.10545 * 18 17 16 20 20 C 1.54889 * 102.74529 * 37.94392 * 19 18 17 21 21 C 1.53879 * 110.03076 * 175.00051 * 17 16 15 22 22 N 1.29951 * 107.42625 * 0.35431 * 15 14 13 23 23 O 1.21300 * 110.24900 * 359.77954 * 22 15 14 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 0.96699 * 113.99284 * 299.99770 * 11 9 7 26 26 H 1.09003 * 109.46888 * 305.00185 * 12 9 7 27 27 H 1.09000 * 109.46751 * 64.99906 * 12 9 7 28 28 H 1.08996 * 109.47093 * 30.24468 * 16 15 14 29 29 H 1.09005 * 109.46800 * 150.24098 * 16 15 14 30 30 H 1.08996 * 110.01683 * 53.60682 * 17 16 15 31 31 H 1.08997 * 110.49077 * 335.78243 * 18 17 16 32 32 H 1.09006 * 110.48437 * 98.43419 * 18 17 16 33 33 H 1.09000 * 110.75430 * 279.63307 * 19 18 17 34 34 H 1.08999 * 110.91713 * 156.33287 * 19 18 17 35 35 H 1.08996 * 110.48713 * 203.37808 * 20 19 18 36 36 H 1.09007 * 110.60029 * 80.79287 * 20 19 18 37 37 H 1.09002 * 110.02962 * 238.57356 * 21 17 16 38 38 H 1.09004 * 110.03100 * 359.94637 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 8 0.4291 -2.5746 1.1670 12 6 2.2454 -3.6621 0.0005 13 6 1.4960 -4.9636 -0.1233 14 7 1.1728 -5.5758 -1.2370 15 6 0.5201 -6.6901 -0.8613 16 6 -0.0565 -7.7380 -1.7782 17 6 -1.4993 -7.3698 -2.1299 18 6 -2.3939 -7.4844 -0.8784 19 6 -3.7348 -8.0397 -1.4196 20 6 -3.2753 -9.0460 -2.5037 21 6 -2.0597 -8.3628 -3.1633 22 7 0.4737 -6.6949 0.4373 23 8 1.0287 -5.7116 0.8808 24 1 -0.4850 -0.8401 -0.0004 25 1 0.9210 -2.5290 1.9983 26 1 2.9295 -3.5551 -0.8413 27 1 2.8115 -3.6559 0.9319 28 1 0.5380 -7.7896 -2.6903 29 1 -0.0401 -8.7066 -1.2785 30 1 -1.5393 -6.3555 -2.5268 31 1 -1.9569 -8.1769 -0.1591 32 1 -2.5423 -6.5045 -0.4245 33 1 -4.3329 -7.2425 -1.8612 34 1 -4.2918 -8.5476 -0.6323 35 1 -4.0668 -9.2058 -3.2358 36 1 -2.9810 -9.9919 -2.0488 37 1 -2.3724 -7.8301 -4.0614 38 1 -1.3034 -9.1064 -3.4149 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379163643.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:30 Heat of formation + Delta-G solvation = -20.621589 kcal Electronic energy + Delta-G solvation = -20203.483239 eV Core-core repulsion = 17047.770908 eV Total energy + Delta-G solvation = -3155.712331 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.11139 -38.60915 -36.66096 -35.50010 -33.20217 -32.23029 -31.04225 -29.37607 -28.76394 -26.05305 -25.33967 -23.16715 -21.93119 -20.79736 -20.69007 -19.72263 -17.76606 -17.38519 -16.91040 -16.03085 -15.30034 -15.15434 -14.37602 -14.17668 -13.83440 -13.77190 -13.55654 -13.43674 -12.85418 -12.53661 -12.14358 -11.86708 -11.51694 -11.26866 -11.18083 -11.13866 -11.07842 -10.82855 -10.77965 -10.72454 -10.62188 -10.49080 -10.29255 -10.16780 -9.82835 -9.22610 -8.56753 -8.21941 -6.45532 -4.31591 1.60423 2.61710 3.33049 3.38907 3.41501 3.57146 3.93078 4.35534 4.44853 4.49325 4.51412 4.63268 5.12644 5.18382 5.25329 5.33302 5.34670 5.47464 5.51838 5.55843 5.68506 5.70531 5.76414 5.77227 5.82091 5.93926 5.98336 6.01376 6.12431 6.19104 6.22282 6.34321 6.41274 6.42732 7.24992 7.79154 8.22587 8.59929 8.73977 8.94721 9.54959 10.94614 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028976 B = 0.004104 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.093375 B = 6821.709561 C = 7204.168740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.037 3.963 3 Si 1.072 2.928 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.652 4.652 8 H 0.056 0.944 9 C 0.220 3.780 10 H 0.058 0.942 11 O -0.581 6.581 12 C -0.054 4.054 13 C 0.214 3.786 14 N -0.497 5.497 15 C 0.166 3.834 16 C -0.017 4.017 17 C -0.089 4.089 18 C -0.120 4.120 19 C -0.125 4.125 20 C -0.124 4.124 21 C -0.118 4.118 22 N -0.395 5.395 23 O 0.072 5.928 24 H 0.285 0.715 25 H 0.358 0.642 26 H 0.108 0.892 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 -15.521 -3.198 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.173 4.173 3 Si 0.899 3.101 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.690 4.690 8 H 0.074 0.926 9 C 0.162 3.838 10 H 0.075 0.925 11 O -0.385 6.385 12 C -0.093 4.093 13 C -0.005 4.005 14 N -0.232 5.232 15 C -0.107 4.107 16 C -0.056 4.056 17 C -0.109 4.109 18 C -0.157 4.157 19 C -0.162 4.162 20 C -0.161 4.161 21 C -0.155 4.155 22 N -0.106 5.106 23 O 0.016 5.984 24 H 0.097 0.903 25 H 0.204 0.796 26 H 0.127 0.873 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.500 -14.642 -3.639 15.293 hybrid contribution 0.839 -1.441 0.428 1.722 sum -1.660 -16.084 -3.210 16.485 Atomic orbital electron populations 1.70613 1.06998 1.32388 1.42126 1.25834 0.96430 1.02576 0.92452 0.83525 0.74699 0.74956 0.76878 1.21285 1.21349 1.20898 1.22344 0.94562 0.91735 1.60352 0.92569 1.19611 0.88147 0.89940 0.86143 0.92478 1.86528 1.39418 1.96360 1.16234 1.21366 0.98481 0.84588 1.04899 1.29270 0.93997 0.96406 0.80832 1.71895 1.17577 1.06366 1.27320 1.25711 0.98997 0.96150 0.89847 1.20072 0.95497 0.93458 0.96589 1.21775 0.92656 1.00327 0.96098 1.22443 0.94977 1.01446 0.96854 1.22493 0.97144 0.98529 0.98075 1.22353 0.97424 0.98419 0.97931 1.22184 0.97522 0.97908 0.97917 1.74533 1.17126 1.05858 1.13076 1.85260 1.51839 1.24771 1.36548 0.90349 0.79636 0.87341 0.88881 0.88993 0.89488 0.90332 0.91225 0.91848 0.91519 0.91665 0.91803 0.91710 0.91475 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.53 55.43 0.75 -25.68 16 2 C 0.04 1.01 5.40 -17.82 -0.10 0.91 16 3 Si 1.07 24.01 29.90 -169.99 -5.08 18.93 16 4 H -0.29 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.65 -17.06 8.76 -34.44 -0.30 -17.36 16 8 H 0.06 1.41 7.74 -52.48 -0.41 1.01 16 9 C 0.22 5.26 2.41 -27.88 -0.07 5.19 16 10 H 0.06 1.54 8.01 -51.93 -0.42 1.12 16 11 O -0.58 -14.02 11.77 -35.23 -0.41 -14.43 16 12 C -0.05 -1.03 5.46 -27.89 -0.15 -1.18 16 13 C 0.21 4.14 7.54 -13.06 -0.10 4.04 16 14 N -0.50 -9.63 11.55 -9.86 -0.11 -9.74 16 15 C 0.17 2.87 7.04 -156.37 -1.10 1.77 16 16 C -0.02 -0.22 4.97 -27.88 -0.14 -0.36 16 17 C -0.09 -1.10 2.92 -89.50 -0.26 -1.36 16 18 C -0.12 -1.53 5.93 -25.07 -0.15 -1.68 16 19 C -0.12 -1.30 6.91 -24.74 -0.17 -1.47 16 20 C -0.12 -1.11 6.83 -25.08 -0.17 -1.28 16 21 C -0.12 -1.13 6.46 -25.61 -0.17 -1.29 16 22 N -0.40 -7.28 12.16 30.90 0.38 -6.90 16 23 O 0.07 1.38 11.31 18.09 0.20 1.58 16 24 H 0.28 8.69 6.47 -40.82 -0.26 8.42 16 25 H 0.36 7.51 9.04 45.56 0.41 7.92 16 26 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 27 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 0.99 8.00 -51.93 -0.42 0.58 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 0.90 7.76 -51.93 -0.40 0.50 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 LS Contribution 318.28 15.07 4.80 4.80 Total: -1.00 -30.56 318.28 -7.27 -37.83 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -4.91 Total: 7.68 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -2.87 Total: -14.06 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 1.01 Total: -42.32 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.21 Total: -12.85 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -5.08 Total: 18.93 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.56 -7.27 -37.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379163643.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.212 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds