Wall clock time and date at job start Mon Mar 30 2020 04:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 11 11 O 1.42905 * 109.46817 * 300.00159 * 9 7 2 12 12 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 13 13 C 1.50695 * 109.47170 * 184.99968 * 12 9 7 14 14 N 1.31130 * 126.55050 * 89.70797 * 13 12 9 15 15 C 1.34496 * 105.61439 * 179.91639 * 14 13 12 16 16 C 1.50702 * 126.28942 * 180.12786 * 15 14 13 17 17 C 1.53000 * 109.47134 * 270.24418 * 16 15 14 18 18 C 1.54263 * 110.03035 * 292.16417 * 17 16 15 19 19 C 1.54894 * 104.19619 * 217.10545 * 18 17 16 20 20 C 1.54889 * 102.74529 * 37.94392 * 19 18 17 21 21 C 1.53879 * 110.03076 * 175.00051 * 17 16 15 22 22 N 1.29951 * 107.42625 * 0.35431 * 15 14 13 23 23 O 1.21300 * 110.24900 * 359.77954 * 22 15 14 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 0.96699 * 113.99284 * 299.99770 * 11 9 7 26 26 H 1.09003 * 109.46888 * 305.00185 * 12 9 7 27 27 H 1.09000 * 109.46751 * 64.99906 * 12 9 7 28 28 H 1.08996 * 109.47093 * 30.24468 * 16 15 14 29 29 H 1.09005 * 109.46800 * 150.24098 * 16 15 14 30 30 H 1.08996 * 110.01683 * 53.60682 * 17 16 15 31 31 H 1.08997 * 110.49077 * 335.78243 * 18 17 16 32 32 H 1.09006 * 110.48437 * 98.43419 * 18 17 16 33 33 H 1.09000 * 110.75430 * 279.63307 * 19 18 17 34 34 H 1.08999 * 110.91713 * 156.33287 * 19 18 17 35 35 H 1.08996 * 110.48713 * 203.37808 * 20 19 18 36 36 H 1.09007 * 110.60029 * 80.79287 * 20 19 18 37 37 H 1.09002 * 110.02962 * 238.57356 * 21 17 16 38 38 H 1.09004 * 110.03100 * 359.94637 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 8 0.4291 -2.5746 1.1670 12 6 2.2454 -3.6621 0.0005 13 6 1.4960 -4.9636 -0.1233 14 7 1.1728 -5.5758 -1.2370 15 6 0.5201 -6.6901 -0.8613 16 6 -0.0565 -7.7380 -1.7782 17 6 -1.4993 -7.3698 -2.1299 18 6 -2.3939 -7.4844 -0.8784 19 6 -3.7348 -8.0397 -1.4196 20 6 -3.2753 -9.0460 -2.5037 21 6 -2.0597 -8.3628 -3.1633 22 7 0.4737 -6.6949 0.4373 23 8 1.0287 -5.7116 0.8808 24 1 -0.4850 -0.8401 -0.0004 25 1 0.9210 -2.5290 1.9983 26 1 2.9295 -3.5551 -0.8413 27 1 2.8115 -3.6559 0.9319 28 1 0.5380 -7.7896 -2.6903 29 1 -0.0401 -8.7066 -1.2785 30 1 -1.5393 -6.3555 -2.5268 31 1 -1.9569 -8.1769 -0.1591 32 1 -2.5423 -6.5045 -0.4245 33 1 -4.3329 -7.2425 -1.8612 34 1 -4.2918 -8.5476 -0.6323 35 1 -4.0668 -9.2058 -3.2358 36 1 -2.9810 -9.9919 -2.0488 37 1 -2.3724 -7.8301 -4.0614 38 1 -1.3034 -9.1064 -3.4149 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379163643.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:29 Heat of formation + Delta-G solvation = -41.940402 kcal Electronic energy + Delta-G solvation = -20204.407692 eV Core-core repulsion = 17047.770908 eV Total energy + Delta-G solvation = -3156.636784 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.57386 -39.54786 -38.54815 -36.91148 -34.68482 -34.29542 -32.23364 -30.98522 -29.64676 -27.27549 -27.10292 -24.73022 -23.66847 -22.22781 -21.61174 -20.68269 -19.58202 -19.00467 -18.41914 -17.20805 -16.95470 -16.12375 -16.03443 -15.72016 -15.57594 -15.03727 -14.77571 -14.66496 -14.28098 -14.00322 -13.60590 -13.44526 -12.87055 -12.74393 -12.54795 -12.29362 -12.13399 -12.08921 -12.03609 -11.99669 -11.89355 -11.85919 -11.65261 -11.51170 -11.35401 -10.85989 -10.64820 -10.16533 -8.62747 -6.49191 0.10319 1.18014 1.58565 1.66568 1.82731 1.83567 2.57700 2.65601 3.02572 3.17190 3.55977 3.61628 3.68352 3.84145 4.07488 4.18065 4.21886 4.28571 4.32806 4.43495 4.49137 4.54742 4.67741 4.78557 4.80836 4.81492 4.88676 4.90357 4.99933 5.05543 5.19084 5.24993 5.31063 5.37229 5.43622 5.75983 6.12666 6.51970 7.11407 7.13105 7.48121 8.75112 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028976 B = 0.004104 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.093375 B = 6821.709561 C = 7204.168740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.017 4.017 3 Si 1.121 2.879 4 H -0.272 1.272 5 H -0.264 1.264 6 H -0.291 1.291 7 C -0.653 4.653 8 H 0.070 0.930 9 C 0.221 3.779 10 H 0.016 0.984 11 O -0.595 6.595 12 C -0.039 4.039 13 C 0.208 3.792 14 N -0.515 5.515 15 C 0.170 3.830 16 C -0.018 4.018 17 C -0.088 4.088 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.112 4.112 22 N -0.406 5.406 23 O 0.062 5.938 24 H 0.265 0.735 25 H 0.372 0.628 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.302 -16.860 -3.688 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.219 4.219 3 Si 0.942 3.058 4 H -0.197 1.197 5 H -0.189 1.189 6 H -0.217 1.217 7 C -0.691 4.691 8 H 0.088 0.912 9 C 0.163 3.837 10 H 0.034 0.966 11 O -0.402 6.402 12 C -0.079 4.079 13 C -0.012 4.012 14 N -0.250 5.250 15 C -0.104 4.104 16 C -0.056 4.056 17 C -0.108 4.108 18 C -0.159 4.159 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.149 4.149 22 N -0.118 5.118 23 O 0.009 5.991 24 H 0.076 0.924 25 H 0.219 0.781 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.354 -15.996 -4.106 16.570 hybrid contribution 0.463 -1.084 0.587 1.316 sum -0.891 -17.080 -3.520 17.462 Atomic orbital electron populations 1.70764 1.08365 1.31151 1.45534 1.27356 0.96333 1.06723 0.91505 0.82905 0.74258 0.70872 0.77771 1.19733 1.18862 1.21660 1.22755 0.95365 0.92484 1.58467 0.91195 1.19372 0.88056 0.91528 0.84757 0.96568 1.86476 1.40194 1.96496 1.16988 1.21124 0.97222 0.82621 1.06893 1.29253 0.94166 0.96651 0.81088 1.71910 1.18180 1.07263 1.27656 1.26486 0.97707 0.96135 0.90024 1.20366 0.95602 0.92999 0.96640 1.21756 0.92512 0.99837 0.96667 1.22426 0.96869 0.99600 0.97032 1.22501 0.95752 0.98939 0.98949 1.22352 0.97438 0.98152 0.97559 1.22171 0.98265 0.97561 0.96953 1.74523 1.17638 1.05922 1.13739 1.85238 1.52110 1.25097 1.36684 0.92442 0.78094 0.86268 0.86103 0.87275 0.87295 0.93154 0.91312 0.95358 0.92026 0.90694 0.90236 0.90443 0.91097 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.27 13.53 21.45 0.29 -55.98 16 2 C -0.02 -0.94 5.40 84.65 0.46 -0.49 16 3 Si 1.12 47.58 29.90 68.60 2.05 49.64 16 4 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 6 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.65 -33.88 8.76 25.60 0.22 -33.66 16 8 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.22 10.74 2.41 29.85 0.07 10.82 16 10 H 0.02 0.92 8.01 -2.38 -0.02 0.91 16 11 O -0.59 -29.34 11.77 -148.98 -1.75 -31.09 16 12 C -0.04 -1.48 5.46 29.85 0.16 -1.32 16 13 C 0.21 8.02 7.54 88.38 0.67 8.69 16 14 N -0.52 -19.95 11.55 -303.18 -3.50 -23.45 16 15 C 0.17 5.80 7.04 138.46 0.97 6.78 16 16 C -0.02 -0.43 4.97 29.85 0.15 -0.28 16 17 C -0.09 -2.12 2.92 -10.07 -0.03 -2.15 16 18 C -0.12 -3.12 5.93 31.67 0.19 -2.93 16 19 C -0.12 -2.44 6.91 31.89 0.22 -2.22 16 20 C -0.12 -1.78 6.83 31.67 0.22 -1.56 16 21 C -0.11 -1.88 6.46 31.32 0.20 -1.68 16 22 N -0.41 -14.90 12.16 -60.30 -0.73 -15.63 16 23 O 0.06 2.38 11.31 74.78 0.85 3.22 16 24 H 0.27 16.88 6.47 -92.71 -0.60 16.28 16 25 H 0.37 15.66 9.04 -74.06 -0.67 14.99 16 26 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 27 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 28 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.11 2.20 8.00 -2.38 -0.02 2.19 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.75 7.76 -2.39 -0.02 1.73 16 32 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.15 7.67 -2.38 -0.02 1.13 16 Total: -1.00 -67.19 318.28 1.26 -65.93 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.56 Total: 27.38 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 3.50 Total: -20.01 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -3.95 Total: -95.07 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.91 Total: -27.87 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.05 Total: 49.64 kcal Total: -67.19 1.26 -65.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379163643.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.992 kcal (2) G-P(sol) polarization free energy of solvation -67.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds