Wall clock time and date at job start Mon Mar 30 2020 04:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86803 * 119.99825 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 120.00134 * 3 2 1 6 6 H 1.48506 * 109.46902 * 240.00385 * 3 2 1 7 7 C 1.39585 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00387 * 179.97438 * 7 2 1 9 9 N 1.36121 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00174 * 180.02562 * 9 7 2 11 11 O 1.21507 * 119.99921 * 359.97438 * 10 9 7 12 12 C 1.48827 * 120.00052 * 180.02562 * 10 9 7 13 13 O 1.21444 * 120.00441 * 359.97438 * 12 10 9 14 14 N 1.34774 * 120.00052 * 179.97438 * 12 10 9 15 15 C 1.48417 * 125.87428 * 359.68929 * 14 12 10 16 16 C 1.52507 * 105.70790 * 183.03473 * 15 14 12 17 17 H 1.08998 * 110.57045 * 87.42452 * 16 15 14 18 18 C 1.51510 * 117.17802 * 214.53154 * 16 15 14 19 19 C 1.53818 * 107.09394 * 178.38928 * 18 16 15 20 20 C 1.52540 * 111.60426 * 302.69916 * 19 18 16 21 21 C 1.53779 * 111.66354 * 54.05978 * 20 19 18 22 22 C 1.51710 * 107.08210 * 302.33251 * 21 20 19 23 23 H 1.09000 * 110.92383 * 303.39070 * 22 21 20 24 24 C 1.48752 * 125.87531 * 179.97438 * 14 12 10 25 25 H 0.97001 * 119.99874 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99985 * 0.02562 * 9 7 2 27 27 H 1.09001 * 110.20189 * 302.21567 * 15 14 12 28 28 H 1.09003 * 110.20272 * 64.10398 * 15 14 12 29 29 H 1.09007 * 109.93130 * 58.99475 * 18 16 15 30 30 H 1.08993 * 110.00120 * 297.82300 * 18 16 15 31 31 H 1.08993 * 109.05307 * 182.15522 * 19 18 16 32 32 H 1.08995 * 108.99508 * 63.20678 * 19 18 16 33 33 H 1.08997 * 109.04338 * 293.49175 * 20 19 18 34 34 H 1.08999 * 108.98080 * 174.58330 * 20 19 18 35 35 H 1.09000 * 109.92610 * 182.94214 * 21 20 19 36 36 H 1.09002 * 110.00330 * 61.76997 * 21 20 19 37 37 H 1.08993 * 110.67905 * 323.79380 * 24 14 12 38 38 H 1.09005 * 110.67573 * 86.95599 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 1.2792 2.7465 -0.0006 5 1 3.0979 1.6965 1.2124 6 1 3.0978 1.6965 -1.2126 7 6 2.0082 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3276 -2.3877 -0.0005 10 6 2.0015 -3.5549 -0.0005 11 8 3.2166 -3.5548 -0.0010 12 6 1.2574 -4.8437 -0.0011 13 8 0.0429 -4.8439 -0.0011 14 7 1.9313 -6.0109 -0.0016 15 6 3.4076 -6.1628 -0.0082 16 6 3.6680 -7.6636 -0.0838 17 1 3.6889 -7.9969 -1.1213 18 6 4.8796 -8.1939 0.6553 19 6 4.8966 -9.7195 0.4597 20 6 3.6047 -10.3634 0.9528 21 6 2.3667 -9.7188 0.3072 22 6 2.4118 -8.2387 0.6371 23 1 2.4550 -8.0812 1.7148 24 6 1.3233 -7.3685 -0.0017 25 1 -0.4850 0.8401 0.0004 26 1 0.3576 -2.3877 -0.0005 27 1 3.8338 -5.6608 -0.8768 28 1 3.8321 -5.7548 0.9091 29 1 4.8011 -7.9562 1.7163 30 1 5.7887 -7.7563 0.2431 31 1 5.7370 -10.1396 1.0122 32 1 5.0220 -9.9398 -0.6003 33 1 3.5413 -10.2499 2.0350 34 1 3.6216 -11.4252 0.7073 35 1 1.4599 -10.1635 0.7172 36 1 2.3937 -9.8598 -0.7733 37 1 0.4153 -7.3836 0.6010 38 1 1.1162 -7.6974 -1.0201 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380158817.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:40 Heat of formation + Delta-G solvation = -82.058152 kcal Electronic energy + Delta-G solvation = -20460.271149 eV Core-core repulsion = 17301.894728 eV Total energy + Delta-G solvation = -3158.376421 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.34755 -38.78560 -37.00178 -35.34849 -34.09272 -31.69221 -31.41886 -30.47734 -27.38866 -26.03170 -24.79059 -22.31217 -21.24212 -20.89869 -20.08831 -18.83432 -18.08627 -16.53351 -16.01382 -15.55422 -15.00915 -14.84181 -14.54453 -14.34413 -14.23550 -13.87585 -13.22750 -12.97661 -12.71509 -12.46352 -12.31930 -12.12378 -11.92661 -11.74716 -11.69849 -11.16852 -11.13557 -10.89131 -10.61478 -10.55883 -10.40180 -10.35561 -10.27482 -9.83335 -9.67708 -8.29528 -8.17273 -8.15860 -6.63998 -3.96549 2.49462 3.13612 3.18259 3.18791 3.27988 4.05589 4.22387 4.30829 4.54690 4.56607 4.88619 4.97432 5.04241 5.19657 5.21560 5.26539 5.33558 5.40473 5.48676 5.56563 5.70051 5.76348 5.84443 5.91575 5.95125 6.00636 6.07831 6.09135 6.13166 6.25113 6.32950 6.45456 6.65191 7.33398 7.75925 7.86322 8.32509 8.62240 8.98860 9.35346 9.88378 10.51035 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.042545 B = 0.004116 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.961016 B = 6801.252640 C = 7364.783290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.031 3.969 3 Si 0.939 3.061 4 H -0.281 1.281 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.112 0.888 9 N -0.501 5.501 10 C 0.399 3.601 11 O -0.591 6.591 12 C 0.527 3.473 13 O -0.549 6.549 14 N -0.608 5.608 15 C 0.130 3.870 16 C -0.110 4.110 17 H 0.080 0.920 18 C -0.104 4.104 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.104 4.104 22 C -0.108 4.108 23 H 0.086 0.914 24 C 0.115 3.885 25 H 0.280 0.720 26 H 0.404 0.596 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.220 -17.133 0.848 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.206 1.206 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.129 0.871 9 N -0.136 5.136 10 C 0.183 3.817 11 O -0.479 6.479 12 C 0.314 3.686 13 O -0.426 6.426 14 N -0.343 5.343 15 C 0.008 3.992 16 C -0.129 4.129 17 H 0.098 0.902 18 C -0.142 4.142 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.142 4.142 22 C -0.127 4.127 23 H 0.104 0.896 24 C -0.007 4.007 25 H 0.091 0.909 26 H 0.240 0.760 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.144 -16.883 0.845 17.986 hybrid contribution -0.247 0.795 -0.024 0.833 sum 5.897 -16.087 0.821 17.154 Atomic orbital electron populations 1.69483 1.06504 1.29383 1.45502 1.25575 0.95618 1.00412 0.95988 0.85785 0.78861 0.79399 0.79469 1.20619 1.19406 1.19411 1.19815 0.93901 0.81875 1.48060 0.87061 1.41539 1.10445 1.04127 1.57453 1.18879 0.87841 0.84078 0.90924 1.90563 1.12787 1.86418 1.58155 1.20496 0.87025 0.84747 0.76322 1.90688 1.13946 1.87489 1.50519 1.48850 1.07760 1.04552 1.73184 1.21750 0.79837 0.93891 1.03734 1.22108 0.95555 0.95222 1.00025 0.90185 1.21306 0.97450 0.94897 1.00538 1.21542 0.97321 0.95308 1.01320 1.21522 0.94312 0.99161 1.00495 1.21340 0.97941 0.93930 1.00959 1.22244 0.95382 0.94637 1.00476 0.89558 1.22032 0.96548 0.81608 1.00553 0.90914 0.76047 0.90233 0.90710 0.91469 0.91366 0.92084 0.92173 0.92125 0.92154 0.91640 0.91500 0.90469 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.66 13.03 55.53 0.72 -22.93 16 2 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 3 Si 0.94 20.27 29.56 -169.99 -5.02 15.25 16 4 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.31 -8.53 9.67 -15.15 -0.15 -8.67 16 8 H 0.11 3.14 7.15 -52.49 -0.38 2.77 16 9 N -0.50 -13.70 5.25 -11.59 -0.06 -13.76 16 10 C 0.40 10.30 7.79 -11.88 -0.09 10.21 16 11 O -0.59 -15.78 13.74 5.36 0.07 -15.71 16 12 C 0.53 12.17 7.91 -11.88 -0.09 12.08 16 13 O -0.55 -13.60 16.76 5.41 0.09 -13.51 16 14 N -0.61 -11.32 3.38 -171.13 -0.58 -11.89 16 15 C 0.13 2.12 5.19 -3.24 -0.02 2.10 16 16 C -0.11 -1.29 2.32 -90.11 -0.21 -1.50 16 17 H 0.08 0.90 7.93 -51.93 -0.41 0.49 16 18 C -0.10 -1.01 5.69 -27.06 -0.15 -1.17 16 19 C -0.12 -0.94 5.84 -26.54 -0.15 -1.09 16 20 C -0.12 -0.91 5.84 -26.56 -0.16 -1.07 16 21 C -0.10 -0.90 5.68 -26.98 -0.15 -1.06 16 22 C -0.11 -1.23 2.53 -89.61 -0.23 -1.45 16 23 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16 24 C 0.11 1.66 6.55 -2.64 -0.02 1.64 16 25 H 0.28 7.08 8.30 -40.82 -0.34 6.74 16 26 H 0.40 11.18 7.35 -40.82 -0.30 10.88 16 27 H 0.08 1.41 7.53 -51.93 -0.39 1.02 16 28 H 0.07 1.30 7.76 -51.93 -0.40 0.90 16 29 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.56 7.98 -51.93 -0.41 0.15 16 37 H 0.08 1.15 8.06 -51.93 -0.42 0.74 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 308.73 15.07 4.65 4.65 Total: -1.00 -30.61 308.73 -7.28 -37.89 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.65 Total: 9.28 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: -1.52 Total: 10.74 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.08 Total: -48.59 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: 0.16 Total: -29.22 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.61 -7.28 -37.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380158817.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.164 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds