Wall clock time and date at job start Mon Mar 30 2020 04:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86803 * 119.99825 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 120.00134 * 3 2 1 6 6 H 1.48506 * 109.46902 * 240.00385 * 3 2 1 7 7 C 1.39585 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00387 * 179.97438 * 7 2 1 9 9 N 1.36121 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00174 * 180.02562 * 9 7 2 11 11 O 1.21507 * 119.99921 * 359.97438 * 10 9 7 12 12 C 1.48827 * 120.00052 * 180.02562 * 10 9 7 13 13 O 1.21444 * 120.00441 * 359.97438 * 12 10 9 14 14 N 1.34774 * 120.00052 * 179.97438 * 12 10 9 15 15 C 1.48417 * 125.87428 * 359.68929 * 14 12 10 16 16 C 1.52507 * 105.70790 * 183.03473 * 15 14 12 17 17 H 1.08998 * 110.57045 * 87.42452 * 16 15 14 18 18 C 1.51510 * 117.17802 * 214.53154 * 16 15 14 19 19 C 1.53818 * 107.09394 * 178.38928 * 18 16 15 20 20 C 1.52540 * 111.60426 * 302.69916 * 19 18 16 21 21 C 1.53779 * 111.66354 * 54.05978 * 20 19 18 22 22 C 1.51710 * 107.08210 * 302.33251 * 21 20 19 23 23 H 1.09000 * 110.92383 * 303.39070 * 22 21 20 24 24 C 1.48752 * 125.87531 * 179.97438 * 14 12 10 25 25 H 0.97001 * 119.99874 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99985 * 0.02562 * 9 7 2 27 27 H 1.09001 * 110.20189 * 302.21567 * 15 14 12 28 28 H 1.09003 * 110.20272 * 64.10398 * 15 14 12 29 29 H 1.09007 * 109.93130 * 58.99475 * 18 16 15 30 30 H 1.08993 * 110.00120 * 297.82300 * 18 16 15 31 31 H 1.08993 * 109.05307 * 182.15522 * 19 18 16 32 32 H 1.08995 * 108.99508 * 63.20678 * 19 18 16 33 33 H 1.08997 * 109.04338 * 293.49175 * 20 19 18 34 34 H 1.08999 * 108.98080 * 174.58330 * 20 19 18 35 35 H 1.09000 * 109.92610 * 182.94214 * 21 20 19 36 36 H 1.09002 * 110.00330 * 61.76997 * 21 20 19 37 37 H 1.08993 * 110.67905 * 323.79380 * 24 14 12 38 38 H 1.09005 * 110.67573 * 86.95599 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 1.2792 2.7465 -0.0006 5 1 3.0979 1.6965 1.2124 6 1 3.0978 1.6965 -1.2126 7 6 2.0082 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3276 -2.3877 -0.0005 10 6 2.0015 -3.5549 -0.0005 11 8 3.2166 -3.5548 -0.0010 12 6 1.2574 -4.8437 -0.0011 13 8 0.0429 -4.8439 -0.0011 14 7 1.9313 -6.0109 -0.0016 15 6 3.4076 -6.1628 -0.0082 16 6 3.6680 -7.6636 -0.0838 17 1 3.6889 -7.9969 -1.1213 18 6 4.8796 -8.1939 0.6553 19 6 4.8966 -9.7195 0.4597 20 6 3.6047 -10.3634 0.9528 21 6 2.3667 -9.7188 0.3072 22 6 2.4118 -8.2387 0.6371 23 1 2.4550 -8.0812 1.7148 24 6 1.3233 -7.3685 -0.0017 25 1 -0.4850 0.8401 0.0004 26 1 0.3576 -2.3877 -0.0005 27 1 3.8338 -5.6608 -0.8768 28 1 3.8321 -5.7548 0.9091 29 1 4.8011 -7.9562 1.7163 30 1 5.7887 -7.7563 0.2431 31 1 5.7370 -10.1396 1.0122 32 1 5.0220 -9.9398 -0.6003 33 1 3.5413 -10.2499 2.0350 34 1 3.6216 -11.4252 0.7073 35 1 1.4599 -10.1635 0.7172 36 1 2.3937 -9.8598 -0.7733 37 1 0.4153 -7.3836 0.6010 38 1 1.1162 -7.6974 -1.0201 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380158817.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:40 Heat of formation + Delta-G solvation = -102.301401 kcal Electronic energy + Delta-G solvation = -20461.148962 eV Core-core repulsion = 17301.894728 eV Total energy + Delta-G solvation = -3159.254234 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.73114 -40.37201 -38.89787 -36.75081 -35.97826 -33.49072 -32.57321 -31.69393 -28.55148 -27.86925 -26.25447 -23.86268 -22.13739 -22.01781 -20.93079 -20.74947 -20.04002 -18.34340 -17.75152 -17.07226 -16.79193 -15.97932 -15.80989 -15.74420 -15.39231 -15.32752 -14.75880 -14.61701 -14.02203 -13.72557 -13.67700 -13.52837 -13.20580 -12.96658 -12.92205 -12.60490 -12.57472 -12.18061 -12.12621 -11.94828 -11.79692 -11.64719 -11.34276 -11.17989 -10.72636 -10.29015 -10.16478 -9.81573 -8.66467 -6.11645 0.57434 1.38900 1.48060 1.51479 1.65168 2.26033 2.34056 2.98266 3.13734 3.36771 3.64696 3.72305 3.97163 4.16725 4.20489 4.27283 4.39098 4.51723 4.55870 4.57287 4.66150 4.70181 4.82247 4.86602 5.06058 5.08176 5.16212 5.23694 5.28827 5.32811 5.36687 5.38399 5.46137 5.62429 5.67419 6.14771 6.30305 6.71659 6.94413 7.26473 7.78615 8.49482 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.042545 B = 0.004116 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.961016 B = 6801.252640 C = 7364.783290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.006 4.006 3 Si 1.012 2.988 4 H -0.267 1.267 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.346 4.346 8 H 0.100 0.900 9 N -0.513 5.513 10 C 0.392 3.608 11 O -0.605 6.605 12 C 0.525 3.475 13 O -0.573 6.573 14 N -0.601 5.601 15 C 0.126 3.874 16 C -0.099 4.099 17 H 0.093 0.907 18 C -0.103 4.103 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.098 4.098 22 C -0.096 4.096 23 H 0.082 0.918 24 C 0.107 3.893 25 H 0.289 0.711 26 H 0.399 0.601 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.174 -18.716 0.787 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.210 4.210 3 Si 0.832 3.168 4 H -0.191 1.191 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.475 4.475 8 H 0.117 0.883 9 N -0.147 5.147 10 C 0.177 3.823 11 O -0.494 6.494 12 C 0.311 3.689 13 O -0.453 6.453 14 N -0.334 5.334 15 C 0.004 3.996 16 C -0.118 4.118 17 H 0.111 0.889 18 C -0.141 4.141 19 C -0.151 4.151 20 C -0.153 4.153 21 C -0.136 4.136 22 C -0.115 4.115 23 H 0.100 0.900 24 C -0.013 4.013 25 H 0.099 0.901 26 H 0.233 0.767 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.117 -18.520 0.786 19.856 hybrid contribution -0.529 1.204 -0.005 1.315 sum 6.588 -17.316 0.781 18.543 Atomic orbital electron populations 1.69556 1.07898 1.30874 1.45244 1.26571 0.96509 1.03520 0.94363 0.84733 0.77723 0.74655 0.79672 1.19073 1.18790 1.18793 1.19950 0.93684 0.82988 1.50895 0.88254 1.41642 1.10135 1.04731 1.58199 1.19487 0.87974 0.84994 0.89869 1.90531 1.13444 1.87029 1.58414 1.19947 0.86626 0.85159 0.77214 1.90664 1.14521 1.87895 1.52265 1.48994 1.09115 1.04927 1.70413 1.21862 0.78214 0.97421 1.02104 1.22059 0.96998 0.91391 1.01309 0.88897 1.21333 0.96333 0.96523 0.99909 1.21526 0.98071 0.93391 1.02089 1.21527 0.93396 1.00026 1.00381 1.21355 0.99155 0.91360 1.01757 1.22218 0.93292 0.96160 0.99842 0.89991 1.22390 0.97386 0.79637 1.01925 0.90096 0.76654 0.92035 0.92258 0.91903 0.91148 0.90803 0.91440 0.92155 0.90357 0.90554 0.90631 0.90937 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.37 13.03 21.77 0.28 -49.09 16 2 C -0.01 -0.30 5.51 85.14 0.47 0.17 16 3 Si 1.01 41.38 29.56 68.60 2.03 43.41 16 4 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 7 C -0.35 -19.89 9.67 84.35 0.82 -19.08 16 8 H 0.10 5.82 7.15 -2.91 -0.02 5.80 16 9 N -0.51 -29.26 5.25 -308.88 -1.62 -30.88 16 10 C 0.39 21.10 7.79 87.08 0.68 21.78 16 11 O -0.61 -33.57 13.74 -3.74 -0.05 -33.62 16 12 C 0.53 24.99 7.91 87.08 0.69 25.68 16 13 O -0.57 -29.22 16.76 -3.54 -0.06 -29.28 16 14 N -0.60 -22.60 3.38 -813.65 -2.75 -25.35 16 15 C 0.13 4.13 5.19 85.85 0.45 4.57 16 16 C -0.10 -2.15 2.32 -10.47 -0.02 -2.18 16 17 H 0.09 1.84 7.93 -2.39 -0.02 1.82 16 18 C -0.10 -1.79 5.69 30.38 0.17 -1.61 16 19 C -0.11 -1.42 5.84 30.72 0.18 -1.24 16 20 C -0.12 -1.36 5.84 30.70 0.18 -1.18 16 21 C -0.10 -1.37 5.68 30.43 0.17 -1.20 16 22 C -0.10 -1.98 2.53 -10.14 -0.03 -2.00 16 23 H 0.08 1.79 8.08 -2.39 -0.02 1.78 16 24 C 0.11 2.99 6.55 86.04 0.56 3.55 16 25 H 0.29 14.54 8.30 -92.71 -0.77 13.77 16 26 H 0.40 23.12 7.35 -92.70 -0.68 22.44 16 27 H 0.06 2.24 7.53 -2.39 -0.02 2.22 16 28 H 0.06 2.13 7.76 -2.39 -0.02 2.11 16 29 H 0.06 1.15 8.07 -2.38 -0.02 1.13 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 0.97 7.98 -2.39 -0.02 0.95 16 37 H 0.07 2.12 8.06 -2.39 -0.02 2.10 16 38 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -67.86 308.73 2.52 -65.34 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: 0.38 Total: 32.20 kcal Atomic # 6 Polarization: 22.96 SS G_CDS: 4.32 Total: 27.27 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -4.09 Total: -105.32 kcal Atomic # 8 Polarization: -62.79 SS G_CDS: -0.11 Total: -62.90 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -67.86 2.52 -65.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380158817.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.961 kcal (2) G-P(sol) polarization free energy of solvation -67.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds