Wall clock time and date at job start Mon Mar 30 2020 04:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86801 * 119.99644 * 2 1 4 4 H 1.48495 * 109.46956 * 269.99810 * 3 2 1 5 5 H 1.48500 * 109.47401 * 30.00437 * 3 2 1 6 6 H 1.48503 * 109.46908 * 150.00115 * 3 2 1 7 7 C 1.39583 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99813 * 359.97438 * 7 2 1 9 9 N 1.36121 * 120.00041 * 179.97438 * 7 2 1 10 10 C 1.34778 * 120.00029 * 180.02562 * 9 7 2 11 11 O 1.21507 * 119.99787 * 0.02562 * 10 9 7 12 12 C 1.48828 * 119.99997 * 179.97438 * 10 9 7 13 13 O 1.21437 * 119.99994 * 0.02562 * 12 10 9 14 14 N 1.34778 * 119.99997 * 180.02562 * 12 10 9 15 15 C 1.48407 * 125.87479 * 359.96201 * 14 12 10 16 16 C 1.52539 * 105.69586 * 176.91945 * 15 14 12 17 17 H 1.08996 * 110.01942 * 273.17130 * 16 15 14 18 18 C 1.51523 * 117.04482 * 145.62951 * 16 15 14 19 19 C 1.53808 * 107.09558 * 181.83748 * 18 16 15 20 20 C 1.52536 * 111.61906 * 57.29924 * 19 18 16 21 21 C 1.53779 * 111.65666 * 305.94326 * 20 19 18 22 22 C 1.51702 * 107.07367 * 57.66285 * 21 20 19 23 23 H 1.08998 * 110.92384 * 56.57662 * 22 21 20 24 24 C 1.48753 * 125.87345 * 180.02562 * 14 12 10 25 25 H 0.97001 * 120.00409 * 0.02562 * 1 2 3 26 26 H 0.96999 * 120.00016 * 359.97438 * 9 7 2 27 27 H 1.09003 * 110.20238 * 295.97717 * 15 14 12 28 28 H 1.09002 * 110.20390 * 57.78242 * 15 14 12 29 29 H 1.08999 * 109.92728 * 62.44019 * 18 16 15 30 30 H 1.08997 * 109.93184 * 301.23496 * 18 16 15 31 31 H 1.08999 * 109.04967 * 296.74763 * 19 18 16 32 32 H 1.08996 * 109.05200 * 177.84915 * 19 18 16 33 33 H 1.09005 * 109.04259 * 66.50881 * 20 19 18 34 34 H 1.09003 * 109.03962 * 185.45461 * 20 19 18 35 35 H 1.08999 * 109.93318 * 177.04691 * 21 20 19 36 36 H 1.08998 * 109.93486 * 298.18560 * 21 20 19 37 37 H 1.09000 * 110.67957 * 36.13281 * 24 14 12 38 38 H 1.09005 * 110.81985 * 273.03765 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 2.4915 2.0464 -1.4000 5 1 1.4415 2.6527 0.7001 6 1 3.5416 1.4403 0.7000 7 6 2.0081 -1.2088 0.0005 8 1 1.4681 -2.1441 0.0014 9 7 3.3693 -1.2088 0.0000 10 6 4.0432 -2.3760 0.0000 11 8 3.4357 -3.4282 0.0000 12 6 5.5315 -2.3759 -0.0011 13 8 6.1387 -1.3242 -0.0016 14 7 6.2054 -3.5431 -0.0017 15 6 5.5989 -4.8976 -0.0004 16 6 6.7684 -5.8735 -0.0806 17 1 7.0393 -6.0466 -1.1221 18 6 6.6222 -7.1865 0.6614 19 6 7.9349 -7.9643 0.4672 20 6 9.1387 -7.1665 0.9583 21 6 9.1992 -5.7735 0.3097 22 6 7.8949 -5.0720 0.6386 23 1 7.7370 -5.0290 1.7162 24 6 7.6852 -3.6953 -0.0023 25 1 -0.4851 0.8400 -0.0004 26 1 3.8543 -0.3687 -0.0011 27 1 5.0373 -5.0577 0.9200 28 1 4.9461 -5.0185 -0.8649 29 1 5.7888 -7.7554 0.2491 30 1 6.4557 -6.9976 1.7219 31 1 8.0634 -8.1864 -0.5921 32 1 7.8787 -8.9010 1.0216 33 1 9.0724 -7.0525 2.0403 34 1 10.0503 -7.7116 0.7135 35 1 10.0377 -5.2095 0.7182 36 1 9.3082 -5.8709 -0.7705 37 1 8.1526 -2.9155 0.5990 38 1 8.0757 -3.6810 -1.0199 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380158824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:43 Heat of formation + Delta-G solvation = -75.535008 kcal Electronic energy + Delta-G solvation = -20517.440980 eV Core-core repulsion = 17359.347424 eV Total energy + Delta-G solvation = -3158.093556 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44299 -38.94509 -37.17259 -35.45246 -34.12784 -31.90123 -31.72625 -30.58130 -27.46315 -26.17749 -24.78819 -22.20702 -21.29413 -20.89863 -20.13560 -19.24379 -18.38312 -16.53232 -16.16758 -15.64667 -15.11347 -14.96390 -14.60429 -14.43437 -14.37128 -13.64359 -13.19161 -13.02744 -12.79166 -12.59276 -12.39741 -12.35676 -12.24662 -11.99530 -11.75440 -11.27107 -11.19203 -10.93685 -10.68782 -10.66088 -10.51684 -10.38103 -10.08948 -9.88454 -9.74361 -8.44452 -8.33876 -8.31569 -6.56553 -3.98135 2.33208 3.04212 3.07497 3.11184 3.13403 3.97662 4.13715 4.18314 4.49598 4.51183 4.66430 4.91858 4.99169 5.14368 5.15736 5.20669 5.29214 5.35149 5.42760 5.50080 5.62293 5.66335 5.73560 5.80955 5.88742 5.92125 5.96773 6.05017 6.08020 6.19122 6.26255 6.39806 6.54761 7.29118 7.70503 7.90566 8.20865 8.52027 8.76742 9.21792 9.64208 10.53648 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.043071 B = 0.004345 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.936416 B = 6443.253242 C = 6997.023399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.052 3.948 3 Si 0.875 3.125 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.308 4.308 8 H 0.127 0.873 9 N -0.530 5.530 10 C 0.409 3.591 11 O -0.572 6.572 12 C 0.528 3.472 13 O -0.553 6.553 14 N -0.605 5.605 15 C 0.127 3.873 16 C -0.109 4.109 17 H 0.081 0.919 18 C -0.104 4.104 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.104 4.104 22 C -0.109 4.109 23 H 0.087 0.913 24 C 0.115 3.885 25 H 0.281 0.719 26 H 0.383 0.617 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.799 -11.663 0.856 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.155 4.155 3 Si 0.700 3.300 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.438 4.438 8 H 0.145 0.855 9 N -0.167 5.167 10 C 0.193 3.807 11 O -0.458 6.458 12 C 0.314 3.686 13 O -0.431 6.431 14 N -0.340 5.340 15 C 0.005 3.995 16 C -0.128 4.128 17 H 0.099 0.901 18 C -0.141 4.141 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.142 4.142 22 C -0.128 4.128 23 H 0.105 0.895 24 C -0.008 4.008 25 H 0.092 0.908 26 H 0.218 0.782 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.457 -11.589 0.852 20.146 hybrid contribution 0.504 1.354 -0.015 1.445 sum 16.962 -10.235 0.838 19.828 Atomic orbital electron populations 1.69440 1.06083 1.28575 1.44771 1.25213 0.95530 0.98533 0.96272 0.86689 0.80437 0.83119 0.79781 1.18922 1.19552 1.18464 1.19543 0.79082 0.97047 1.48084 0.85523 1.41811 1.07545 1.06834 1.60475 1.18761 0.86316 0.85284 0.90307 1.90606 1.68672 1.30155 1.56347 1.20418 0.89563 0.82190 0.76403 1.90674 1.70894 1.30629 1.50912 1.48835 1.06388 1.06136 1.72686 1.21826 0.94238 0.79544 1.03935 1.22114 0.95695 0.94968 1.00067 0.90072 1.21296 0.97394 0.94944 1.00511 1.21537 0.94303 0.98295 1.01365 1.21525 0.97968 0.95520 1.00492 1.21336 0.96356 0.95485 1.00981 1.22250 0.96014 0.94002 1.00508 0.89507 1.22050 0.81020 0.97004 1.00682 0.90832 0.78213 0.90564 0.90039 0.91282 0.91399 0.92151 0.92046 0.92114 0.92125 0.91643 0.91478 0.90437 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.90 13.94 55.53 0.77 -23.12 16 2 C 0.05 1.42 5.51 -17.40 -0.10 1.32 16 3 Si 0.88 19.67 27.74 -169.99 -4.72 14.95 16 4 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 6 H -0.26 -5.70 6.53 56.52 0.37 -5.33 16 7 C -0.31 -8.70 10.16 -15.15 -0.15 -8.85 16 8 H 0.13 3.96 7.37 -52.48 -0.39 3.57 16 9 N -0.53 -13.68 5.06 -11.59 -0.06 -13.74 16 10 C 0.41 10.17 7.79 -11.88 -0.09 10.08 16 11 O -0.57 -15.05 13.73 5.36 0.07 -14.97 16 12 C 0.53 11.55 7.91 -11.88 -0.09 11.46 16 13 O -0.55 -12.84 16.76 5.42 0.09 -12.75 16 14 N -0.61 -10.73 3.38 -171.11 -0.58 -11.31 16 15 C 0.13 1.98 5.18 -3.23 -0.02 1.97 16 16 C -0.11 -1.23 2.31 -90.09 -0.21 -1.43 16 17 H 0.08 0.87 7.96 -51.93 -0.41 0.46 16 18 C -0.10 -0.97 5.68 -27.06 -0.15 -1.12 16 19 C -0.12 -0.90 5.85 -26.55 -0.16 -1.06 16 20 C -0.12 -0.87 5.84 -26.56 -0.16 -1.02 16 21 C -0.10 -0.85 5.68 -26.98 -0.15 -1.00 16 22 C -0.11 -1.16 2.52 -89.61 -0.23 -1.39 16 23 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 24 C 0.11 1.56 6.55 -2.64 -0.02 1.54 16 25 H 0.28 7.20 8.30 -40.82 -0.34 6.86 16 26 H 0.38 9.37 5.22 -40.82 -0.21 9.16 16 27 H 0.08 1.28 7.77 -51.93 -0.40 0.88 16 28 H 0.08 1.40 7.51 -51.93 -0.39 1.01 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.53 7.99 -51.93 -0.42 0.12 16 37 H 0.08 1.09 8.06 -51.93 -0.42 0.67 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 305.65 15.07 4.61 4.61 Total: -1.00 -30.92 305.65 -6.93 -37.85 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.60 Total: 7.99 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -1.52 Total: 10.49 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.14 Total: -48.17 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: 0.16 Total: -27.72 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.72 Total: 14.95 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.92 -6.93 -37.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380158824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.681 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds