Wall clock time and date at job start Mon Mar 30 2020 04:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31012 * 1 3 3 Si 1.86801 * 120.00269 * 2 1 4 4 H 1.48491 * 109.47126 * 270.00490 * 3 2 1 5 5 H 1.48506 * 109.46842 * 30.00386 * 3 2 1 6 6 H 1.48493 * 109.47156 * 150.00073 * 3 2 1 7 7 C 1.39583 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00479 * 359.97438 * 7 2 1 9 9 N 1.36122 * 119.99844 * 180.02562 * 7 2 1 10 10 C 1.34781 * 119.99923 * 179.97438 * 9 7 2 11 11 O 1.21498 * 120.00156 * 359.97438 * 10 9 7 12 12 C 1.48832 * 119.99889 * 179.97438 * 10 9 7 13 13 O 1.21444 * 119.99997 * 359.97438 * 12 10 9 14 14 N 1.34776 * 120.00226 * 180.02562 * 12 10 9 15 15 C 1.47595 * 125.76413 * 0.02575 * 14 12 10 16 16 C 1.55451 * 104.89399 * 204.01006 * 15 14 12 17 17 C 1.55283 * 101.42011 * 323.32374 * 16 15 14 18 18 C 1.46434 * 125.77034 * 179.97438 * 14 12 10 19 19 C 1.53722 * 110.63074 * 299.30238 * 18 14 12 20 20 C 1.55009 * 104.07183 * 97.70119 * 19 18 14 21 21 C 1.54941 * 102.81978 * 37.46150 * 20 19 18 22 22 C 1.53349 * 110.82621 * 58.01836 * 18 14 12 23 23 H 0.97000 * 119.99914 * 359.97438 * 1 2 3 24 24 H 0.96996 * 120.00078 * 359.97438 * 9 7 2 25 25 H 1.09003 * 110.36608 * 322.84861 * 15 14 12 26 26 H 1.09003 * 110.36546 * 85.05214 * 15 14 12 27 27 H 1.09000 * 111.18656 * 205.27123 * 16 15 14 28 28 H 1.09008 * 111.01019 * 81.29474 * 16 15 14 29 29 H 1.09002 * 110.74911 * 276.63182 * 17 16 15 30 30 H 1.09002 * 110.74816 * 153.46061 * 17 16 15 31 31 H 1.09006 * 110.51288 * 216.34848 * 19 18 14 32 32 H 1.08999 * 110.51476 * 339.05356 * 19 18 14 33 33 H 1.09003 * 110.74384 * 279.12457 * 20 19 18 34 34 H 1.09000 * 110.74378 * 155.79412 * 20 19 18 35 35 H 1.09006 * 110.48075 * 203.66980 * 21 20 19 36 36 H 1.08999 * 110.48973 * 81.02852 * 21 20 19 37 37 H 1.08999 * 110.07392 * 358.23656 * 22 18 14 38 38 H 1.09008 * 110.06947 * 119.71333 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4916 2.0464 -1.4000 5 1 1.4417 2.6526 0.7002 6 1 3.5417 1.4401 0.7000 7 6 2.0080 -1.2089 -0.0005 8 1 1.4680 -2.1442 -0.0005 9 7 3.3692 -1.2089 0.0000 10 6 4.0431 -2.3762 0.0000 11 8 3.4356 -3.4284 0.0000 12 6 5.5314 -2.3762 0.0000 13 8 6.1386 -1.3245 -0.0005 14 7 6.2053 -3.5434 -0.0005 15 6 5.5994 -4.8892 -0.0017 16 6 6.6865 -5.8173 0.6094 17 6 7.9848 -5.1941 0.0284 18 6 7.6622 -3.6906 -0.0011 19 6 8.2714 -3.0442 -1.2558 20 6 8.7358 -1.6466 -0.7721 21 6 9.2603 -1.9343 0.6572 22 6 8.2814 -2.9903 1.2145 23 1 -0.4850 0.8401 0.0004 24 1 3.8542 -0.3689 0.0004 25 1 4.7008 -4.9013 0.6151 26 1 5.3638 -5.1983 -1.0201 27 1 6.5619 -6.8459 0.2711 28 1 6.6804 -5.7624 1.6981 29 1 8.1758 -5.5676 -0.9776 30 1 8.8347 -5.3942 0.6809 31 1 9.1211 -3.6270 -1.6115 32 1 7.5194 -2.9469 -2.0388 33 1 7.8979 -0.9501 -0.7430 34 1 9.5350 -1.2643 -1.4070 35 1 9.2307 -1.0290 1.2637 36 1 10.2730 -2.3357 0.6184 37 1 7.5031 -2.5051 1.8034 38 1 8.8191 -3.7128 1.8287 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383923883.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:00 Heat of formation + Delta-G solvation = -65.158143 kcal Electronic energy + Delta-G solvation = -21300.393554 eV Core-core repulsion = 18142.749973 eV Total energy + Delta-G solvation = -3157.643581 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.65335 -38.50559 -36.82201 -35.48521 -34.20089 -31.96952 -31.25012 -28.79037 -28.63456 -26.12480 -24.24504 -22.85098 -21.79503 -20.43935 -19.86350 -19.02979 -17.79280 -16.55530 -16.18002 -15.91747 -15.09117 -14.95892 -14.43598 -14.26870 -13.66479 -13.48046 -13.29795 -13.03002 -12.75413 -12.66743 -12.43777 -12.24566 -11.71673 -11.31493 -11.28500 -11.01554 -10.93649 -10.91148 -10.68886 -10.63377 -10.45901 -10.43159 -10.18075 -9.90930 -9.75104 -8.42621 -8.30464 -8.19418 -6.57633 -3.99297 2.33484 3.04269 3.07234 3.10471 3.17020 3.96330 4.14476 4.37859 4.62526 4.68716 4.76325 4.98428 5.11591 5.14672 5.21002 5.40799 5.53508 5.57886 5.63427 5.74275 5.76720 5.80071 5.90604 5.94382 5.97282 6.08726 6.10527 6.28910 6.30703 6.37254 6.42364 6.66096 6.88596 7.28716 7.78951 7.90989 8.24905 8.55536 8.77675 9.21015 9.63515 10.52626 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.026216 B = 0.006175 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.798454 B = 4533.188414 C = 5339.809583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.053 3.947 3 Si 0.875 3.125 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.308 4.308 8 H 0.127 0.873 9 N -0.529 5.529 10 C 0.408 3.592 11 O -0.573 6.573 12 C 0.528 3.472 13 O -0.541 6.541 14 N -0.588 5.588 15 C 0.103 3.897 16 C -0.138 4.138 17 C -0.121 4.121 18 C 0.159 3.841 19 C -0.123 4.123 20 C -0.133 4.133 21 C -0.114 4.114 22 C -0.122 4.122 23 H 0.281 0.719 24 H 0.383 0.617 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.827 -6.474 0.288 18.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.155 4.155 3 Si 0.700 3.300 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.438 4.438 8 H 0.144 0.856 9 N -0.166 5.166 10 C 0.193 3.807 11 O -0.460 6.460 12 C 0.315 3.685 13 O -0.419 6.419 14 N -0.322 5.322 15 C -0.020 4.020 16 C -0.176 4.176 17 C -0.159 4.159 18 C 0.074 3.926 19 C -0.161 4.161 20 C -0.171 4.171 21 C -0.152 4.152 22 C -0.160 4.160 23 H 0.092 0.908 24 H 0.218 0.782 25 H 0.124 0.876 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.481 -6.402 0.289 17.683 hybrid contribution 0.503 1.257 -0.026 1.354 sum 16.984 -5.145 0.263 17.748 Atomic orbital electron populations 1.69441 1.06092 1.28568 1.44757 1.25214 0.95525 0.98523 0.96279 0.86690 0.80435 0.83148 0.79751 1.18956 1.19581 1.18455 1.19540 0.79120 0.97021 1.48101 0.85552 1.41807 1.07524 1.06840 1.60399 1.18832 0.86486 0.85218 0.90192 1.90563 1.68759 1.30087 1.56546 1.20308 0.89274 0.82386 0.76501 1.90568 1.70232 1.30733 1.50325 1.48169 1.05589 1.06212 1.72231 1.22678 0.97145 0.80244 1.01917 1.22986 0.94617 0.99088 1.00880 1.22740 0.98287 0.93045 1.01833 1.21245 0.80667 0.95117 0.95543 1.22644 0.99858 0.96904 0.96726 1.22780 1.01491 0.97742 0.95045 1.22245 0.97539 0.98389 0.97029 1.22451 0.98876 0.97880 0.96787 0.90834 0.78205 0.87643 0.91592 0.90071 0.90830 0.90637 0.90232 0.91366 0.91511 0.88074 0.92830 0.91941 0.92480 0.91096 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.78 13.94 55.53 0.77 -23.00 16 2 C 0.05 1.41 5.51 -17.40 -0.10 1.31 16 3 Si 0.88 19.49 27.74 -169.99 -4.72 14.77 16 4 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.26 -5.62 6.53 56.52 0.37 -5.25 16 7 C -0.31 -8.61 10.16 -15.15 -0.15 -8.76 16 8 H 0.13 3.92 7.37 -52.48 -0.39 3.54 16 9 N -0.53 -13.37 5.06 -11.59 -0.06 -13.43 16 10 C 0.41 9.90 7.78 -11.87 -0.09 9.81 16 11 O -0.57 -14.85 13.34 5.37 0.07 -14.78 16 12 C 0.53 11.03 7.20 -11.88 -0.09 10.94 16 13 O -0.54 -11.51 12.46 5.42 0.07 -11.44 16 14 N -0.59 -10.13 2.76 -156.16 -0.43 -10.56 16 15 C 0.10 1.59 6.08 -2.14 -0.01 1.57 16 16 C -0.14 -1.53 7.13 -24.22 -0.17 -1.71 16 17 C -0.12 -1.28 5.86 -25.10 -0.15 -1.43 16 18 C 0.16 2.21 0.84 -130.88 -0.11 2.10 16 19 C -0.12 -1.66 5.59 -25.29 -0.14 -1.80 16 20 C -0.13 -1.87 6.34 -24.65 -0.16 -2.03 16 21 C -0.11 -1.45 6.84 -24.97 -0.17 -1.62 16 22 C -0.12 -1.64 5.68 -25.81 -0.15 -1.79 16 23 H 0.28 7.17 8.30 -40.82 -0.34 6.83 16 24 H 0.38 9.14 5.22 -40.82 -0.21 8.92 16 25 H 0.11 1.90 6.17 -51.93 -0.32 1.58 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 29 H 0.07 0.72 7.76 -51.93 -0.40 0.32 16 30 H 0.08 0.70 7.32 -51.93 -0.38 0.32 16 31 H 0.07 0.75 7.75 -51.93 -0.40 0.35 16 32 H 0.07 1.02 8.04 -51.93 -0.42 0.60 16 33 H 0.10 1.75 5.33 -51.93 -0.28 1.47 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 1.15 7.21 -51.93 -0.37 0.78 16 38 H 0.06 0.73 7.22 -51.92 -0.37 0.35 16 LS Contribution 297.59 15.07 4.48 4.48 Total: -1.00 -29.77 297.59 -6.55 -36.32 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -5.25 Total: 11.04 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -1.48 Total: 6.60 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.28 Total: -46.99 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: 0.14 Total: -26.22 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.72 Total: 14.77 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.77 -6.55 -36.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383923883.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.842 kcal (2) G-P(sol) polarization free energy of solvation -29.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds