Wall clock time and date at job start Mon Mar 30 2020 04:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31012 * 1 3 3 Si 1.86801 * 120.00269 * 2 1 4 4 H 1.48491 * 109.47126 * 270.00490 * 3 2 1 5 5 H 1.48506 * 109.46842 * 30.00386 * 3 2 1 6 6 H 1.48493 * 109.47156 * 150.00073 * 3 2 1 7 7 C 1.39583 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00479 * 359.97438 * 7 2 1 9 9 N 1.36122 * 119.99844 * 180.02562 * 7 2 1 10 10 C 1.34781 * 119.99923 * 179.97438 * 9 7 2 11 11 O 1.21498 * 120.00156 * 359.97438 * 10 9 7 12 12 C 1.48832 * 119.99889 * 179.97438 * 10 9 7 13 13 O 1.21444 * 119.99997 * 359.97438 * 12 10 9 14 14 N 1.34776 * 120.00226 * 180.02562 * 12 10 9 15 15 C 1.47595 * 125.76413 * 0.02575 * 14 12 10 16 16 C 1.55451 * 104.89399 * 204.01006 * 15 14 12 17 17 C 1.55283 * 101.42011 * 323.32374 * 16 15 14 18 18 C 1.46434 * 125.77034 * 179.97438 * 14 12 10 19 19 C 1.53722 * 110.63074 * 299.30238 * 18 14 12 20 20 C 1.55009 * 104.07183 * 97.70119 * 19 18 14 21 21 C 1.54941 * 102.81978 * 37.46150 * 20 19 18 22 22 C 1.53349 * 110.82621 * 58.01836 * 18 14 12 23 23 H 0.97000 * 119.99914 * 359.97438 * 1 2 3 24 24 H 0.96996 * 120.00078 * 359.97438 * 9 7 2 25 25 H 1.09003 * 110.36608 * 322.84861 * 15 14 12 26 26 H 1.09003 * 110.36546 * 85.05214 * 15 14 12 27 27 H 1.09000 * 111.18656 * 205.27123 * 16 15 14 28 28 H 1.09008 * 111.01019 * 81.29474 * 16 15 14 29 29 H 1.09002 * 110.74911 * 276.63182 * 17 16 15 30 30 H 1.09002 * 110.74816 * 153.46061 * 17 16 15 31 31 H 1.09006 * 110.51288 * 216.34848 * 19 18 14 32 32 H 1.08999 * 110.51476 * 339.05356 * 19 18 14 33 33 H 1.09003 * 110.74384 * 279.12457 * 20 19 18 34 34 H 1.09000 * 110.74378 * 155.79412 * 20 19 18 35 35 H 1.09006 * 110.48075 * 203.66980 * 21 20 19 36 36 H 1.08999 * 110.48973 * 81.02852 * 21 20 19 37 37 H 1.08999 * 110.07392 * 358.23656 * 22 18 14 38 38 H 1.09008 * 110.06947 * 119.71333 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4916 2.0464 -1.4000 5 1 1.4417 2.6526 0.7002 6 1 3.5417 1.4401 0.7000 7 6 2.0080 -1.2089 -0.0005 8 1 1.4680 -2.1442 -0.0005 9 7 3.3692 -1.2089 0.0000 10 6 4.0431 -2.3762 0.0000 11 8 3.4356 -3.4284 0.0000 12 6 5.5314 -2.3762 0.0000 13 8 6.1386 -1.3245 -0.0005 14 7 6.2053 -3.5434 -0.0005 15 6 5.5994 -4.8892 -0.0017 16 6 6.6865 -5.8173 0.6094 17 6 7.9848 -5.1941 0.0284 18 6 7.6622 -3.6906 -0.0011 19 6 8.2714 -3.0442 -1.2558 20 6 8.7358 -1.6466 -0.7721 21 6 9.2603 -1.9343 0.6572 22 6 8.2814 -2.9903 1.2145 23 1 -0.4850 0.8401 0.0004 24 1 3.8542 -0.3689 0.0004 25 1 4.7008 -4.9013 0.6151 26 1 5.3638 -5.1983 -1.0201 27 1 6.5619 -6.8459 0.2711 28 1 6.6804 -5.7624 1.6981 29 1 8.1758 -5.5676 -0.9776 30 1 8.8347 -5.3942 0.6809 31 1 9.1211 -3.6270 -1.6115 32 1 7.5194 -2.9469 -2.0388 33 1 7.8979 -0.9501 -0.7430 34 1 9.5350 -1.2643 -1.4070 35 1 9.2307 -1.0290 1.2637 36 1 10.2730 -2.3357 0.6184 37 1 7.5031 -2.5051 1.8034 38 1 8.8191 -3.7128 1.8287 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383923883.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:00 Heat of formation + Delta-G solvation = -85.263683 kcal Electronic energy + Delta-G solvation = -21301.265396 eV Core-core repulsion = 18142.749973 eV Total energy + Delta-G solvation = -3158.515423 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.03854 -40.22679 -38.50219 -36.78571 -36.07544 -34.00582 -32.54922 -29.85581 -29.69368 -28.06967 -25.66848 -24.30978 -22.88962 -21.71799 -21.36827 -20.86695 -19.29126 -18.20911 -17.70992 -17.28537 -16.94273 -16.47892 -15.78117 -15.54934 -15.18550 -14.96354 -14.84062 -14.54252 -14.40718 -13.99660 -13.73396 -13.61166 -13.11345 -12.81851 -12.58298 -12.48315 -12.34667 -12.05453 -11.98511 -11.95426 -11.82446 -11.69957 -11.50189 -11.40497 -11.19315 -10.48507 -10.06704 -9.67141 -8.63937 -6.17405 0.55255 1.25454 1.29734 1.35326 1.64183 2.07592 2.28582 2.89863 3.05151 3.51280 3.59124 3.66843 3.78569 3.99293 4.18641 4.20131 4.41575 4.51482 4.56600 4.71657 4.75774 4.86974 4.91948 4.96626 5.04023 5.07719 5.11422 5.13390 5.25571 5.27502 5.32181 5.40193 5.50141 5.70824 5.74099 6.20866 6.34562 6.57241 6.92803 7.16864 7.62797 8.50891 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.026216 B = 0.006175 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.798454 B = 4533.188414 C = 5339.809583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.012 3.988 3 Si 0.947 3.053 4 H -0.253 1.253 5 H -0.256 1.256 6 H -0.251 1.251 7 C -0.338 4.338 8 H 0.077 0.923 9 N -0.536 5.536 10 C 0.408 3.592 11 O -0.594 6.594 12 C 0.529 3.471 13 O -0.546 6.546 14 N -0.581 5.581 15 C 0.092 3.908 16 C -0.123 4.123 17 C -0.110 4.110 18 C 0.146 3.854 19 C -0.120 4.120 20 C -0.138 4.138 21 C -0.109 4.109 22 C -0.122 4.122 23 H 0.290 0.710 24 H 0.391 0.609 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.035 0.965 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.734 -7.020 0.328 21.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.193 4.193 3 Si 0.766 3.234 4 H -0.177 1.177 5 H -0.179 1.179 6 H -0.175 1.175 7 C -0.467 4.467 8 H 0.095 0.905 9 N -0.174 5.174 10 C 0.192 3.808 11 O -0.481 6.481 12 C 0.313 3.687 13 O -0.425 6.425 14 N -0.313 5.313 15 C -0.031 4.031 16 C -0.161 4.161 17 C -0.148 4.148 18 C 0.062 3.938 19 C -0.158 4.158 20 C -0.176 4.176 21 C -0.147 4.147 22 C -0.160 4.160 23 H 0.100 0.900 24 H 0.227 0.773 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.128 0.872 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 20.396 -6.984 0.329 21.561 hybrid contribution -0.688 1.253 -0.050 1.430 sum 19.708 -5.732 0.279 20.526 Atomic orbital electron populations 1.69544 1.07796 1.30262 1.45521 1.26033 0.96347 1.02053 0.94884 0.85615 0.79318 0.77892 0.80537 1.17684 1.17939 1.17500 1.19146 0.80370 0.95984 1.51210 0.90462 1.41688 1.06589 1.07561 1.61585 1.19742 0.88541 0.84600 0.87873 1.90552 1.70171 1.30909 1.56435 1.19560 0.87508 0.83839 0.77777 1.90592 1.69652 1.31219 1.51040 1.48288 1.07686 1.05546 1.69827 1.22802 0.97949 0.80593 1.01716 1.22955 0.92923 0.99335 1.00908 1.22805 0.98617 0.89650 1.03681 1.21722 0.77910 0.98063 0.96109 1.22673 1.00360 0.97075 0.95726 1.22737 1.00766 0.97376 0.96679 1.22253 0.98883 0.97954 0.95595 1.22481 0.98337 0.98645 0.96530 0.89973 0.77284 0.90968 0.91694 0.87172 0.90451 0.88855 0.87006 0.87752 0.93946 0.91963 0.90960 0.92914 0.89192 0.94641 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.71 13.94 21.76 0.30 -51.41 16 2 C 0.01 0.64 5.51 85.14 0.47 1.11 16 3 Si 0.95 40.52 27.74 68.60 1.90 42.42 16 4 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.25 -10.28 6.53 99.48 0.65 -9.63 16 7 C -0.34 -19.98 10.16 84.35 0.86 -19.12 16 8 H 0.08 5.22 7.37 -2.91 -0.02 5.20 16 9 N -0.54 -28.25 5.06 -308.87 -1.56 -29.81 16 10 C 0.41 20.70 7.78 87.08 0.68 21.37 16 11 O -0.59 -32.58 13.34 -3.71 -0.05 -32.63 16 12 C 0.53 22.52 7.20 87.08 0.63 23.15 16 13 O -0.55 -23.58 12.46 -3.54 -0.04 -23.62 16 14 N -0.58 -19.73 2.76 -766.29 -2.12 -21.85 16 15 C 0.09 2.79 6.08 87.01 0.53 3.32 16 16 C -0.12 -2.32 7.13 32.22 0.23 -2.09 16 17 C -0.11 -1.77 5.86 31.65 0.19 -1.59 16 18 C 0.15 3.61 0.84 4.25 0.00 3.62 16 19 C -0.12 -2.90 5.59 31.52 0.18 -2.72 16 20 C -0.14 -3.58 6.34 31.95 0.20 -3.38 16 21 C -0.11 -2.43 6.84 31.73 0.22 -2.21 16 22 C -0.12 -2.94 5.68 31.19 0.18 -2.76 16 23 H 0.29 15.12 8.30 -92.71 -0.77 14.35 16 24 H 0.39 19.03 5.22 -92.71 -0.48 18.55 16 25 H 0.07 2.69 6.17 -2.39 -0.01 2.68 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.09 1.25 7.76 -2.39 -0.02 1.23 16 30 H 0.11 1.20 7.32 -2.39 -0.02 1.19 16 31 H 0.10 1.78 7.75 -2.38 -0.02 1.76 16 32 H 0.04 1.23 8.04 -2.39 -0.02 1.21 16 33 H 0.06 2.13 5.33 -2.39 -0.01 2.11 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.03 1.11 7.21 -2.39 -0.02 1.09 16 38 H 0.10 1.70 7.22 -2.38 -0.02 1.68 16 Total: -1.00 -70.20 297.59 3.32 -66.88 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.54 Total: 31.32 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 4.35 Total: 18.69 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -3.37 Total: -103.07 kcal Atomic # 8 Polarization: -56.16 SS G_CDS: -0.09 Total: -56.25 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 1.90 Total: 42.42 kcal Total: -70.20 3.32 -66.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383923883.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.388 kcal (2) G-P(sol) polarization free energy of solvation -70.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds