Wall clock time and date at job start Mon Mar 30 2020 05:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46858 * 2 1 4 4 H 1.08997 * 109.46451 * 174.08977 * 3 2 1 5 5 C 1.50698 * 109.46976 * 54.09216 * 3 2 1 6 6 H 1.08005 * 119.99819 * 239.99504 * 5 3 2 7 7 C 1.37871 * 120.00216 * 59.99863 * 5 3 2 8 8 N 1.31509 * 120.00253 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00059 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47494 * 89.99705 * 9 7 5 11 11 H 1.48506 * 109.47515 * 209.99920 * 9 7 5 12 12 H 1.48501 * 109.47325 * 330.00050 * 9 7 5 13 13 N 1.46894 * 109.47033 * 294.08687 * 3 2 1 14 14 C 1.46896 * 111.00471 * 275.79035 * 13 3 2 15 15 C 1.50698 * 109.47416 * 176.20235 * 14 13 3 16 16 N 1.34632 * 125.89177 * 259.68905 * 15 14 13 17 17 H 0.97002 * 124.81009 * 0.03207 * 16 15 14 18 18 C 1.36426 * 110.37917 * 179.88182 * 16 15 14 19 19 C 1.34440 * 109.08569 * 0.38604 * 18 16 15 20 20 C 1.37841 * 125.90344 * 79.99660 * 15 14 13 21 21 C 1.47115 * 127.01957 * 359.94336 * 20 15 14 22 22 O 1.21551 * 119.99938 * 0.02562 * 21 20 15 23 23 O 1.34783 * 119.99691 * 179.97438 * 21 20 15 24 24 C 1.45199 * 116.99847 * 179.97438 * 23 21 20 25 25 H 1.08996 * 109.47493 * 178.55589 * 1 2 3 26 26 H 1.09003 * 109.47211 * 58.55497 * 1 2 3 27 27 H 1.09005 * 109.47042 * 298.55806 * 1 2 3 28 28 H 1.08998 * 109.47072 * 120.00003 * 2 1 3 29 29 H 1.09000 * 109.47040 * 240.00094 * 2 1 3 30 30 H 0.97001 * 120.00853 * 179.97438 * 8 7 5 31 31 H 1.00897 * 111.00155 * 39.74774 * 13 3 2 32 32 H 1.09006 * 109.46730 * 296.19734 * 14 13 3 33 33 H 1.08996 * 109.47238 * 56.19197 * 14 13 3 34 34 H 1.08001 * 125.46060 * 180.15423 * 18 16 15 35 35 H 1.08001 * 126.81022 * 179.78945 * 19 18 16 36 36 H 1.09005 * 109.47073 * 60.00191 * 24 23 21 37 37 H 1.08996 * 109.47385 * 180.02562 * 24 23 21 38 38 H 1.09004 * 109.47430 * 300.00313 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1248 1.4443 0.1058 5 6 1.4218 2.1939 1.1508 6 1 0.8149 3.0671 0.9618 7 6 1.6309 1.7666 2.4448 8 7 2.3695 0.7032 2.6750 9 14 0.8652 2.6984 3.8713 10 1 -0.4772 2.1360 4.1663 11 1 1.7313 2.5669 5.0705 12 1 0.7325 4.1330 3.5114 13 7 1.6703 2.0926 -1.2644 14 6 2.6509 1.7938 -2.3165 15 6 2.1911 2.3982 -3.6181 16 7 1.5826 1.7399 -4.6226 17 1 1.3714 0.7932 -4.6165 18 6 1.3022 2.5938 -5.6490 19 6 1.7350 3.8252 -5.3271 20 6 2.3262 3.7190 -3.9884 21 6 2.9377 4.8013 -3.2017 22 8 3.3916 4.5690 -2.0983 23 8 2.9957 6.0503 -3.7049 24 6 3.6124 7.0682 -2.8731 25 1 -0.3634 -1.0273 -0.0259 26 1 -0.3634 0.5361 -0.8768 27 1 -0.3633 0.4913 0.9027 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.5171 0.4027 3.5854 31 1 0.7404 1.8249 -1.5502 32 1 3.6180 2.2150 -2.0419 33 1 2.7441 0.7137 -2.4301 34 1 0.8143 2.3231 -6.5738 35 1 1.6617 4.7160 -5.9335 36 1 4.6449 6.7890 -2.6627 37 1 3.5935 8.0247 -3.3953 38 1 3.0614 7.1550 -1.9365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383994314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:26 Heat of formation + Delta-G solvation = -40.167630 kcal Electronic energy + Delta-G solvation = -20541.423215 eV Core-core repulsion = 17384.863304 eV Total energy + Delta-G solvation = -3156.559911 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.07230 -39.36021 -36.51947 -35.75181 -32.78882 -31.09933 -30.95840 -28.94409 -27.50026 -26.30174 -24.19680 -23.20131 -22.52600 -20.61779 -19.33707 -19.26916 -17.75242 -16.43573 -15.89059 -15.84332 -15.60658 -14.84215 -14.61255 -14.14395 -13.81185 -13.31303 -13.19441 -12.87947 -12.69307 -12.66021 -12.47671 -11.92858 -11.87702 -11.57645 -11.43262 -10.87321 -10.64721 -10.52190 -10.34567 -9.99596 -9.88636 -9.78035 -9.56349 -8.94588 -8.75935 -8.28854 -8.09913 -7.15467 -5.91597 -3.91598 1.83628 2.50608 2.98867 3.36796 3.43471 3.49430 3.51167 3.70669 4.50994 4.96403 5.07442 5.34218 5.36904 5.40656 5.42741 5.47051 5.54712 5.72041 5.84039 6.01337 6.17212 6.30793 6.31831 6.36460 6.56147 6.80654 6.84585 6.87697 7.08510 7.25913 7.31773 7.48797 7.51261 7.70089 7.95313 8.31710 8.43305 8.57236 8.66237 9.13649 9.71211 11.15915 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018431 B = 0.006001 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.779571 B = 4664.603375 C = 5787.645262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.218 3.782 4 H 0.036 0.964 5 C -0.481 4.481 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.893 3.107 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.664 5.664 14 C 0.120 3.880 15 C 0.129 3.871 16 N -0.549 5.549 17 H 0.417 0.583 18 C -0.028 4.028 19 C -0.151 4.151 20 C -0.209 4.209 21 C 0.529 3.471 22 O -0.483 6.483 23 O -0.365 6.365 24 C 0.040 3.960 25 H 0.021 0.979 26 H 0.027 0.973 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.008 0.992 30 H 0.258 0.742 31 H 0.322 0.678 32 H 0.100 0.900 33 H 0.025 0.975 34 H 0.167 0.833 35 H 0.147 0.853 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.784 3.448 -16.067 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.111 3.889 4 H 0.054 0.946 5 C -0.520 4.520 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.539 5.539 9 Si 0.721 3.279 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.295 5.295 14 C -0.010 4.010 15 C 0.010 3.990 16 N -0.144 5.144 17 H 0.253 0.747 18 C -0.155 4.155 19 C -0.175 4.175 20 C -0.217 4.217 21 C 0.373 3.627 22 O -0.370 6.370 23 O -0.283 6.283 24 C -0.055 4.055 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.140 0.860 32 H 0.118 0.882 33 H 0.043 0.957 34 H 0.185 0.815 35 H 0.165 0.835 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.302 3.796 -15.417 15.881 hybrid contribution -0.697 -0.835 0.657 1.271 sum -0.998 2.961 -14.760 15.087 Atomic orbital electron populations 1.21567 0.97691 0.97876 1.01322 1.22148 0.94998 1.01301 1.00159 1.19209 0.96384 0.88271 0.85035 0.94585 1.21029 1.30076 1.11288 0.89605 0.92044 1.24885 0.95662 0.95231 0.98629 1.69874 1.39478 1.24309 1.20227 0.86571 0.78843 0.80491 0.81959 1.20963 1.21450 1.19909 1.60840 1.02887 1.63197 1.02558 1.20648 0.99000 0.95682 0.85710 1.20873 0.96167 0.91257 0.90716 1.41616 1.47052 1.11410 1.14346 0.74668 1.21664 1.08930 0.90372 0.94563 1.22041 1.03004 0.97098 0.95386 1.19280 1.14315 0.91095 0.97041 1.20103 0.76890 0.81412 0.84309 1.90965 1.43795 1.82796 1.19410 1.86518 1.74482 1.19012 1.48283 1.23135 0.97956 0.88963 0.95414 0.95957 0.95364 0.91386 0.88773 0.97321 0.93211 0.86019 0.88241 0.95734 0.81525 0.83509 0.92291 0.88835 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.39 37.16 0.35 -2.34 16 2 C -0.15 -3.39 5.50 -26.73 -0.15 -3.53 16 3 C 0.22 5.49 2.33 -68.87 -0.16 5.33 16 4 H 0.04 1.02 7.86 -51.93 -0.41 0.61 16 5 C -0.48 -13.39 7.35 -34.44 -0.25 -13.64 16 6 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 7 C 0.06 1.56 5.22 -17.82 -0.09 1.47 16 8 N -0.90 -25.71 11.39 55.43 0.63 -25.08 16 9 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.66 -14.48 6.24 -109.23 -0.68 -15.16 16 14 C 0.12 2.23 5.21 -4.98 -0.03 2.20 16 15 C 0.13 2.07 6.69 -81.51 -0.55 1.53 16 16 N -0.55 -6.54 5.89 -8.88 -0.05 -6.60 16 17 H 0.42 3.76 8.96 -40.82 -0.37 3.40 16 18 C -0.03 -0.31 11.87 -16.85 -0.20 -0.51 16 19 C -0.15 -1.99 11.00 -37.49 -0.41 -2.40 16 20 C -0.21 -3.51 6.33 -103.01 -0.65 -4.16 16 21 C 0.53 9.83 7.95 34.33 0.27 10.11 16 22 O -0.48 -10.61 14.93 -19.31 -0.29 -10.90 16 23 O -0.37 -5.82 10.47 -40.72 -0.43 -6.25 16 24 C 0.04 0.50 10.57 101.05 1.07 1.57 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.03 0.54 6.42 -51.93 -0.33 0.20 16 27 H 0.07 1.60 7.05 -51.93 -0.37 1.23 16 28 H 0.09 2.46 6.25 -51.93 -0.32 2.13 16 29 H 0.01 0.17 7.24 -51.93 -0.38 -0.20 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.32 6.66 6.55 -39.29 -0.26 6.41 16 32 H 0.10 2.06 7.07 -51.93 -0.37 1.70 16 33 H 0.02 0.42 7.23 -51.93 -0.38 0.05 16 34 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 318.61 15.07 4.80 4.80 Total: -1.00 -32.28 318.61 -7.09 -39.37 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.25 Total: 7.27 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -0.80 Total: -4.38 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.10 Total: -46.83 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.71 Total: -17.14 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.28 -7.09 -39.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383994314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.798 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds