Wall clock time and date at job start Mon Mar 30 2020 05:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46858 * 2 1 4 4 H 1.08997 * 109.46451 * 174.08977 * 3 2 1 5 5 C 1.50698 * 109.46976 * 54.09216 * 3 2 1 6 6 H 1.08005 * 119.99819 * 239.99504 * 5 3 2 7 7 C 1.37871 * 120.00216 * 59.99863 * 5 3 2 8 8 N 1.31509 * 120.00253 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00059 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47494 * 89.99705 * 9 7 5 11 11 H 1.48506 * 109.47515 * 209.99920 * 9 7 5 12 12 H 1.48501 * 109.47325 * 330.00050 * 9 7 5 13 13 N 1.46894 * 109.47033 * 294.08687 * 3 2 1 14 14 C 1.46896 * 111.00471 * 275.79035 * 13 3 2 15 15 C 1.50698 * 109.47416 * 176.20235 * 14 13 3 16 16 N 1.34632 * 125.89177 * 259.68905 * 15 14 13 17 17 H 0.97002 * 124.81009 * 0.03207 * 16 15 14 18 18 C 1.36426 * 110.37917 * 179.88182 * 16 15 14 19 19 C 1.34440 * 109.08569 * 0.38604 * 18 16 15 20 20 C 1.37841 * 125.90344 * 79.99660 * 15 14 13 21 21 C 1.47115 * 127.01957 * 359.94336 * 20 15 14 22 22 O 1.21551 * 119.99938 * 0.02562 * 21 20 15 23 23 O 1.34783 * 119.99691 * 179.97438 * 21 20 15 24 24 C 1.45199 * 116.99847 * 179.97438 * 23 21 20 25 25 H 1.08996 * 109.47493 * 178.55589 * 1 2 3 26 26 H 1.09003 * 109.47211 * 58.55497 * 1 2 3 27 27 H 1.09005 * 109.47042 * 298.55806 * 1 2 3 28 28 H 1.08998 * 109.47072 * 120.00003 * 2 1 3 29 29 H 1.09000 * 109.47040 * 240.00094 * 2 1 3 30 30 H 0.97001 * 120.00853 * 179.97438 * 8 7 5 31 31 H 1.00897 * 111.00155 * 39.74774 * 13 3 2 32 32 H 1.09006 * 109.46730 * 296.19734 * 14 13 3 33 33 H 1.08996 * 109.47238 * 56.19197 * 14 13 3 34 34 H 1.08001 * 125.46060 * 180.15423 * 18 16 15 35 35 H 1.08001 * 126.81022 * 179.78945 * 19 18 16 36 36 H 1.09005 * 109.47073 * 60.00191 * 24 23 21 37 37 H 1.08996 * 109.47385 * 180.02562 * 24 23 21 38 38 H 1.09004 * 109.47430 * 300.00313 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1248 1.4443 0.1058 5 6 1.4218 2.1939 1.1508 6 1 0.8149 3.0671 0.9618 7 6 1.6309 1.7666 2.4448 8 7 2.3695 0.7032 2.6750 9 14 0.8652 2.6984 3.8713 10 1 -0.4772 2.1360 4.1663 11 1 1.7313 2.5669 5.0705 12 1 0.7325 4.1330 3.5114 13 7 1.6703 2.0926 -1.2644 14 6 2.6509 1.7938 -2.3165 15 6 2.1911 2.3982 -3.6181 16 7 1.5826 1.7399 -4.6226 17 1 1.3714 0.7932 -4.6165 18 6 1.3022 2.5938 -5.6490 19 6 1.7350 3.8252 -5.3271 20 6 2.3262 3.7190 -3.9884 21 6 2.9377 4.8013 -3.2017 22 8 3.3916 4.5690 -2.0983 23 8 2.9957 6.0503 -3.7049 24 6 3.6124 7.0682 -2.8731 25 1 -0.3634 -1.0273 -0.0259 26 1 -0.3634 0.5361 -0.8768 27 1 -0.3633 0.4913 0.9027 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.5171 0.4027 3.5854 31 1 0.7404 1.8249 -1.5502 32 1 3.6180 2.2150 -2.0419 33 1 2.7441 0.7137 -2.4301 34 1 0.8143 2.3231 -6.5738 35 1 1.6617 4.7160 -5.9335 36 1 4.6449 6.7890 -2.6627 37 1 3.5935 8.0247 -3.3953 38 1 3.0614 7.1550 -1.9365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383994314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:26 Heat of formation + Delta-G solvation = -62.639991 kcal Electronic energy + Delta-G solvation = -20542.397690 eV Core-core repulsion = 17384.863304 eV Total energy + Delta-G solvation = -3157.534386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.17504 -40.68142 -38.32780 -37.15876 -34.67037 -32.77452 -32.19285 -30.33831 -28.70619 -28.08460 -25.81315 -25.02095 -23.82263 -21.61539 -21.20934 -20.56813 -19.03122 -18.05421 -17.55982 -17.16772 -16.85834 -16.70037 -16.28993 -15.55152 -15.26089 -14.69293 -14.48795 -14.37606 -14.26280 -13.98209 -13.87249 -13.65406 -13.27205 -13.09863 -12.82674 -12.69553 -12.49553 -12.45702 -11.89199 -11.73158 -11.63202 -11.45134 -11.29344 -10.99637 -10.43603 -9.81802 -9.21519 -8.88277 -8.05825 -6.13164 0.52365 1.39658 1.41569 1.51968 1.54874 1.86376 2.39415 2.43890 2.47665 3.22728 3.71958 3.85365 4.11789 4.19073 4.37575 4.39193 4.41924 4.52780 4.56073 4.62152 4.68278 4.74323 4.79694 5.02740 5.07623 5.14907 5.35400 5.41530 5.56938 5.69143 5.74856 5.78202 5.81746 5.98346 6.31848 6.59930 6.68600 6.84224 6.98169 7.07453 7.53712 8.99624 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018431 B = 0.006001 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.779571 B = 4664.603375 C = 5787.645262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.137 4.137 3 C 0.226 3.774 4 H -0.007 1.007 5 C -0.497 4.497 6 H 0.044 0.956 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.278 1.278 13 N -0.672 5.672 14 C 0.129 3.871 15 C 0.108 3.892 16 N -0.531 5.531 17 H 0.433 0.567 18 C 0.006 3.994 19 C -0.167 4.167 20 C -0.237 4.237 21 C 0.522 3.478 22 O -0.533 6.533 23 O -0.363 6.363 24 C 0.033 3.967 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.038 0.962 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.259 0.741 31 H 0.330 0.670 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.219 0.781 35 H 0.165 0.835 36 H 0.056 0.944 37 H 0.137 0.863 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 3.182 -18.571 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.177 4.177 3 C 0.118 3.882 4 H 0.011 0.989 5 C -0.535 4.535 6 H 0.063 0.937 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.204 1.204 13 N -0.304 5.304 14 C -0.001 4.001 15 C -0.012 4.012 16 N -0.127 5.127 17 H 0.273 0.727 18 C -0.121 4.121 19 C -0.190 4.190 20 C -0.246 4.246 21 C 0.369 3.631 22 O -0.424 6.424 23 O -0.279 6.279 24 C -0.060 4.060 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.149 0.851 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.236 0.764 35 H 0.183 0.817 36 H 0.075 0.925 37 H 0.155 0.845 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.043 3.522 -17.958 18.414 hybrid contribution -0.123 -0.694 1.323 1.498 sum -2.166 2.828 -16.635 17.012 Atomic orbital electron populations 1.21440 0.95790 0.99439 1.00804 1.21952 0.96580 0.99465 0.99699 1.18909 0.93515 0.89673 0.86128 0.98915 1.21215 1.30143 1.11077 0.91105 0.93745 1.25544 0.96062 0.95985 1.00774 1.69996 1.40188 1.25237 1.20636 0.85690 0.78583 0.78990 0.79166 1.19677 1.21014 1.20354 1.60608 1.03927 1.63372 1.02488 1.20345 0.96893 0.96518 0.86345 1.20324 0.98497 0.91523 0.90846 1.41606 1.45428 1.12356 1.13332 0.72730 1.22434 1.05897 0.88920 0.94885 1.22303 1.03632 0.99133 0.93948 1.19578 1.15245 0.90862 0.98949 1.20656 0.76029 0.82480 0.83899 1.90938 1.46209 1.83621 1.21609 1.86509 1.74350 1.18601 1.48487 1.23430 0.97316 0.89862 0.95419 0.93410 0.93342 0.94243 0.91932 0.94951 0.93177 0.85134 0.91496 0.94066 0.76404 0.81720 0.92536 0.84465 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.81 9.39 71.98 0.68 -4.14 16 2 C -0.14 -6.37 5.50 30.60 0.17 -6.20 16 3 C 0.23 11.76 2.33 44.17 0.10 11.86 16 4 H -0.01 -0.42 7.86 -2.39 -0.02 -0.44 16 5 C -0.50 -28.57 7.35 25.60 0.19 -28.38 16 6 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 7 C 0.01 0.82 5.22 84.65 0.44 1.26 16 8 N -0.92 -53.98 11.39 21.44 0.24 -53.74 16 9 Si 0.95 45.77 29.54 68.60 2.03 47.79 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 13 N -0.67 -29.97 6.24 -499.48 -3.12 -33.09 16 14 C 0.13 4.90 5.21 85.56 0.45 5.34 16 15 C 0.11 3.38 6.69 42.03 0.28 3.66 16 16 N -0.53 -10.83 5.89 -182.01 -1.07 -11.91 16 17 H 0.43 6.04 8.96 -92.71 -0.83 5.21 16 18 C 0.01 0.10 11.87 83.11 0.99 1.09 16 19 C -0.17 -3.90 11.00 23.62 0.26 -3.64 16 20 C -0.24 -7.83 6.33 -18.82 -0.12 -7.95 16 21 C 0.52 20.02 7.95 70.15 0.56 20.57 16 22 O -0.53 -24.87 14.93 19.67 0.29 -24.57 16 23 O -0.36 -11.56 10.47 -56.94 -0.60 -12.16 16 24 C 0.03 0.84 10.57 113.37 1.20 2.04 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 1.76 6.42 -2.39 -0.02 1.74 16 27 H 0.04 1.83 7.05 -2.38 -0.02 1.81 16 28 H 0.06 3.32 6.25 -2.39 -0.01 3.31 16 29 H 0.03 1.31 7.24 -2.39 -0.02 1.30 16 30 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 31 H 0.33 13.51 6.55 -89.70 -0.59 12.92 16 32 H 0.07 2.97 7.07 -2.38 -0.02 2.95 16 33 H 0.04 1.40 7.23 -2.39 -0.02 1.38 16 34 H 0.22 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 36 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -74.34 318.61 2.63 -71.71 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -0.33 Total: 20.44 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 5.19 Total: -4.48 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -3.95 Total: -98.73 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -0.30 Total: -36.73 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -74.34 2.63 -71.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383994314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.068 kcal (2) G-P(sol) polarization free energy of solvation -74.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds