Wall clock time and date at job start Mon Mar 30 2020 05:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47167 * 2 1 4 4 H 1.09001 * 109.47519 * 180.89717 * 3 2 1 5 5 C 1.50700 * 109.47359 * 300.89791 * 3 2 1 6 6 H 1.08000 * 119.99927 * 119.99818 * 5 3 2 7 7 C 1.37873 * 119.99960 * 300.00320 * 5 3 2 8 8 N 1.31518 * 119.99713 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 119.99918 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47089 * 90.00290 * 9 7 5 11 11 H 1.48499 * 109.46823 * 209.99977 * 9 7 5 12 12 H 1.48498 * 109.47550 * 329.99903 * 9 7 5 13 13 N 1.46905 * 109.47351 * 60.90260 * 3 2 1 14 14 C 1.46897 * 111.00341 * 86.62920 * 13 3 2 15 15 C 1.50694 * 109.47209 * 174.95009 * 14 13 3 16 16 N 1.34629 * 125.89737 * 259.98069 * 15 14 13 17 17 H 0.96998 * 124.80874 * 0.05831 * 16 15 14 18 18 C 1.36430 * 110.38335 * 180.02562 * 16 15 14 19 19 C 1.34434 * 109.08575 * 359.97438 * 18 16 15 20 20 C 1.37842 * 125.89824 * 79.99754 * 15 14 13 21 21 C 1.47109 * 127.02322 * 0.24755 * 20 15 14 22 22 O 1.21553 * 120.00074 * 359.70212 * 21 20 15 23 23 O 1.34786 * 120.00190 * 179.70209 * 21 20 15 24 24 C 1.45202 * 117.00202 * 179.97438 * 23 21 20 25 25 H 1.09000 * 109.47289 * 295.70879 * 1 2 3 26 26 H 1.09008 * 109.46663 * 55.70160 * 1 2 3 27 27 H 1.08994 * 109.46977 * 175.70023 * 1 2 3 28 28 H 1.08997 * 109.47063 * 240.00065 * 2 1 3 29 29 H 1.09003 * 109.46715 * 119.99909 * 2 1 3 30 30 H 0.97002 * 119.99642 * 179.97438 * 8 7 5 31 31 H 1.00899 * 110.99932 * 210.58873 * 13 3 2 32 32 H 1.09002 * 109.46879 * 54.94587 * 14 13 3 33 33 H 1.08998 * 109.47090 * 294.94883 * 14 13 3 34 34 H 1.07998 * 125.45680 * 179.97438 * 18 16 15 35 35 H 1.07996 * 126.81646 * 180.02562 * 19 18 16 36 36 H 1.09003 * 109.46918 * 300.00213 * 24 23 21 37 37 H 1.09001 * 109.46927 * 60.00373 * 24 23 21 38 38 H 1.08996 * 109.46974 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0161 5 6 1.5196 2.1593 -1.2192 6 1 0.9003 3.0369 -1.1063 7 6 1.8341 1.6948 -2.4786 8 7 1.3795 2.3202 -3.5426 9 14 2.9058 0.1774 -2.6738 10 1 2.0470 -1.0335 -2.7127 11 1 3.6789 0.2767 -3.9378 12 1 3.8435 0.0826 -1.5262 13 7 1.5683 2.1287 1.2102 14 6 2.4893 1.9086 2.3332 15 6 2.0412 2.7250 3.5179 16 7 2.5585 3.9066 3.9034 17 1 3.2846 4.3663 3.4537 18 6 1.9163 4.3662 5.0159 19 6 0.9659 3.4841 5.3708 20 6 1.0310 2.3907 4.3942 21 6 0.1934 1.1818 4.3608 22 8 0.3579 0.3523 3.4877 23 8 -0.7566 0.9940 5.2984 24 6 -1.5457 -0.2211 5.2032 25 1 -0.3634 0.4458 0.9259 26 1 -0.3633 0.5791 -0.8490 27 1 -0.3633 -1.0247 -0.0770 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6011 1.9936 -4.4287 31 1 1.4360 3.1142 1.0388 32 1 3.4953 2.2116 2.0427 33 1 2.4910 0.8518 2.6000 34 1 2.1361 5.2907 5.5292 35 1 0.2890 3.5641 6.2085 36 1 -2.0696 -0.2401 4.2475 37 1 -0.8884 -1.0877 5.2745 38 1 -2.2717 -0.2474 6.0157 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383994315.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:30 Heat of formation + Delta-G solvation = -34.325439 kcal Electronic energy + Delta-G solvation = -20746.845291 eV Core-core repulsion = 17590.538716 eV Total energy + Delta-G solvation = -3156.306575 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.14175 -39.45549 -36.56200 -35.83432 -32.85006 -31.41850 -31.15817 -29.18499 -27.62826 -26.59076 -24.25949 -22.99855 -22.62798 -20.67671 -19.41814 -19.28910 -17.84971 -16.60632 -16.22357 -15.94006 -15.69825 -15.38993 -14.48350 -14.12256 -13.58170 -13.47817 -13.33690 -13.16711 -12.87600 -12.78571 -12.65057 -12.29111 -11.92086 -11.63335 -11.45231 -10.97945 -10.63751 -10.46349 -10.40707 -10.09628 -9.99025 -9.87095 -9.24226 -8.91172 -8.81879 -8.54635 -8.16196 -7.42405 -6.08486 -4.06968 1.74148 2.45210 2.91425 3.30680 3.38810 3.40390 3.43750 3.61029 4.40913 4.87428 4.99368 5.21824 5.25573 5.27949 5.34007 5.37934 5.39397 5.62437 5.73766 5.95073 6.04802 6.18195 6.31943 6.40196 6.62343 6.72772 6.79790 6.84201 7.01119 7.08785 7.28896 7.33322 7.43611 7.63087 7.69852 7.93388 8.32617 8.34325 8.61855 8.95732 9.54283 11.04307 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022017 B = 0.005953 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.422591 B = 4702.340070 C = 5510.890345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 C 0.188 3.812 4 H -0.001 1.001 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.899 5.899 9 Si 0.888 3.112 10 H -0.276 1.276 11 H -0.299 1.299 12 H -0.269 1.269 13 N -0.656 5.656 14 C 0.118 3.882 15 C 0.128 3.872 16 N -0.547 5.547 17 H 0.418 0.582 18 C -0.026 4.026 19 C -0.152 4.152 20 C -0.209 4.209 21 C 0.531 3.469 22 O -0.488 6.488 23 O -0.364 6.364 24 C 0.040 3.960 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.016 0.984 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.264 0.736 31 H 0.335 0.665 32 H 0.027 0.973 33 H 0.099 0.901 34 H 0.168 0.832 35 H 0.148 0.852 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.732 0.999 18.560 18.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.145 4.145 3 C 0.080 3.920 4 H 0.016 0.984 5 C -0.550 4.550 6 H 0.096 0.904 7 C -0.128 4.128 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.227 1.227 12 H -0.195 1.195 13 N -0.287 5.287 14 C -0.012 4.012 15 C 0.009 3.991 16 N -0.142 5.142 17 H 0.255 0.745 18 C -0.153 4.153 19 C -0.175 4.175 20 C -0.218 4.218 21 C 0.376 3.624 22 O -0.375 6.375 23 O -0.282 6.282 24 C -0.054 4.054 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.035 0.965 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.153 0.847 32 H 0.045 0.955 33 H 0.117 0.883 34 H 0.186 0.814 35 H 0.165 0.835 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.425 0.298 18.242 18.249 hybrid contribution 1.486 -0.165 -0.697 1.650 sum 1.911 0.133 17.545 17.649 Atomic orbital electron populations 1.21435 0.95470 0.98038 1.02953 1.21656 0.97623 0.97669 0.97554 1.19604 0.92849 0.91785 0.87803 0.98354 1.21011 1.32362 1.13164 0.88510 0.90429 1.24872 0.95476 0.96680 0.95788 1.69893 1.45318 1.40459 0.98028 0.86849 0.80861 0.83911 0.76551 1.20316 1.22705 1.19466 1.60483 1.46598 1.16475 1.05188 1.20693 0.93476 0.99167 0.87843 1.20749 0.94767 0.87024 0.96608 1.41620 1.30708 1.17666 1.24236 0.74510 1.21685 0.99255 1.01828 0.92483 1.22044 1.00734 0.94013 1.00746 1.19275 1.02976 0.97293 1.02207 1.20092 0.78173 0.85472 0.78691 1.90922 1.67533 1.44357 1.34646 1.86531 1.46538 1.43126 1.51956 1.23136 0.94380 0.84968 1.02936 0.92006 0.91903 0.96502 0.94628 0.94660 0.92638 0.84686 0.95480 0.88268 0.81444 0.83476 0.91924 0.92332 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.82 9.53 37.16 0.35 -2.47 16 2 C -0.11 -2.52 5.30 -26.73 -0.14 -2.67 16 3 C 0.19 4.48 1.90 -68.86 -0.13 4.35 16 4 H 0.00 -0.02 6.75 -51.93 -0.35 -0.38 16 5 C -0.51 -14.12 7.79 -34.44 -0.27 -14.39 16 6 H 0.08 2.31 7.84 -52.49 -0.41 1.90 16 7 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 8 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 9 Si 0.89 22.38 24.37 -169.99 -4.14 18.23 16 10 H -0.28 -6.92 6.88 56.52 0.39 -6.53 16 11 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.27 -6.54 6.53 56.52 0.37 -6.17 16 13 N -0.66 -13.51 5.69 -109.22 -0.62 -14.14 16 14 C 0.12 2.04 5.28 -4.98 -0.03 2.02 16 15 C 0.13 1.93 6.68 -81.51 -0.54 1.38 16 16 N -0.55 -6.20 5.89 -8.88 -0.05 -6.26 16 17 H 0.42 3.59 8.96 -40.82 -0.37 3.23 16 18 C -0.03 -0.26 11.87 -16.85 -0.20 -0.46 16 19 C -0.15 -1.89 11.00 -37.49 -0.41 -2.30 16 20 C -0.21 -3.28 6.33 -103.01 -0.65 -3.93 16 21 C 0.53 9.08 7.95 34.33 0.27 9.36 16 22 O -0.49 -9.57 14.69 -19.31 -0.28 -9.85 16 23 O -0.36 -5.38 10.47 -40.73 -0.43 -5.80 16 24 C 0.04 0.46 10.57 101.05 1.07 1.53 16 25 H 0.06 1.44 7.52 -51.93 -0.39 1.05 16 26 H 0.06 1.59 7.04 -51.92 -0.37 1.22 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.04 0.87 3.29 -51.93 -0.17 0.70 16 29 H 0.03 0.78 7.64 -51.93 -0.40 0.39 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 31 H 0.34 6.88 8.11 -39.29 -0.32 6.56 16 32 H 0.03 0.44 7.93 -51.93 -0.41 0.02 16 33 H 0.10 1.86 6.58 -51.93 -0.34 1.52 16 34 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 313.86 15.07 4.73 4.73 Total: -1.00 -32.86 313.86 -6.04 -38.90 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.24 Total: 6.29 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -0.78 Total: -5.57 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.10 Total: -46.92 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.71 Total: -15.66 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.14 Total: 18.23 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.86 -6.04 -38.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383994315.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.571 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds