Wall clock time and date at job start Mon Mar 30 2020 05:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47167 * 2 1 4 4 H 1.09001 * 109.47519 * 180.89717 * 3 2 1 5 5 C 1.50700 * 109.47359 * 300.89791 * 3 2 1 6 6 H 1.08000 * 119.99927 * 119.99818 * 5 3 2 7 7 C 1.37873 * 119.99960 * 300.00320 * 5 3 2 8 8 N 1.31518 * 119.99713 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 119.99918 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47089 * 90.00290 * 9 7 5 11 11 H 1.48499 * 109.46823 * 209.99977 * 9 7 5 12 12 H 1.48498 * 109.47550 * 329.99903 * 9 7 5 13 13 N 1.46905 * 109.47351 * 60.90260 * 3 2 1 14 14 C 1.46897 * 111.00341 * 86.62920 * 13 3 2 15 15 C 1.50694 * 109.47209 * 174.95009 * 14 13 3 16 16 N 1.34629 * 125.89737 * 259.98069 * 15 14 13 17 17 H 0.96998 * 124.80874 * 0.05831 * 16 15 14 18 18 C 1.36430 * 110.38335 * 180.02562 * 16 15 14 19 19 C 1.34434 * 109.08575 * 359.97438 * 18 16 15 20 20 C 1.37842 * 125.89824 * 79.99754 * 15 14 13 21 21 C 1.47109 * 127.02322 * 0.24755 * 20 15 14 22 22 O 1.21553 * 120.00074 * 359.70212 * 21 20 15 23 23 O 1.34786 * 120.00190 * 179.70209 * 21 20 15 24 24 C 1.45202 * 117.00202 * 179.97438 * 23 21 20 25 25 H 1.09000 * 109.47289 * 295.70879 * 1 2 3 26 26 H 1.09008 * 109.46663 * 55.70160 * 1 2 3 27 27 H 1.08994 * 109.46977 * 175.70023 * 1 2 3 28 28 H 1.08997 * 109.47063 * 240.00065 * 2 1 3 29 29 H 1.09003 * 109.46715 * 119.99909 * 2 1 3 30 30 H 0.97002 * 119.99642 * 179.97438 * 8 7 5 31 31 H 1.00899 * 110.99932 * 210.58873 * 13 3 2 32 32 H 1.09002 * 109.46879 * 54.94587 * 14 13 3 33 33 H 1.08998 * 109.47090 * 294.94883 * 14 13 3 34 34 H 1.07998 * 125.45680 * 179.97438 * 18 16 15 35 35 H 1.07996 * 126.81646 * 180.02562 * 19 18 16 36 36 H 1.09003 * 109.46918 * 300.00213 * 24 23 21 37 37 H 1.09001 * 109.46927 * 60.00373 * 24 23 21 38 38 H 1.08996 * 109.46974 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0161 5 6 1.5196 2.1593 -1.2192 6 1 0.9003 3.0369 -1.1063 7 6 1.8341 1.6948 -2.4786 8 7 1.3795 2.3202 -3.5426 9 14 2.9058 0.1774 -2.6738 10 1 2.0470 -1.0335 -2.7127 11 1 3.6789 0.2767 -3.9378 12 1 3.8435 0.0826 -1.5262 13 7 1.5683 2.1287 1.2102 14 6 2.4893 1.9086 2.3332 15 6 2.0412 2.7250 3.5179 16 7 2.5585 3.9066 3.9034 17 1 3.2846 4.3663 3.4537 18 6 1.9163 4.3662 5.0159 19 6 0.9659 3.4841 5.3708 20 6 1.0310 2.3907 4.3942 21 6 0.1934 1.1818 4.3608 22 8 0.3579 0.3523 3.4877 23 8 -0.7566 0.9940 5.2984 24 6 -1.5457 -0.2211 5.2032 25 1 -0.3634 0.4458 0.9259 26 1 -0.3633 0.5791 -0.8490 27 1 -0.3633 -1.0247 -0.0770 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6011 1.9936 -4.4287 31 1 1.4360 3.1142 1.0388 32 1 3.4953 2.2116 2.0427 33 1 2.4910 0.8518 2.6000 34 1 2.1361 5.2907 5.5292 35 1 0.2890 3.5641 6.2085 36 1 -2.0696 -0.2401 4.2475 37 1 -0.8884 -1.0877 5.2745 38 1 -2.2717 -0.2474 6.0157 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383994315.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:29 Heat of formation + Delta-G solvation = -58.103402 kcal Electronic energy + Delta-G solvation = -20747.876381 eV Core-core repulsion = 17590.538716 eV Total energy + Delta-G solvation = -3157.337665 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.16379 -40.63797 -38.32088 -37.09786 -34.70199 -33.33703 -32.17580 -30.55026 -28.80547 -28.23922 -25.70392 -24.96631 -23.81144 -21.61068 -21.21917 -20.53860 -19.14948 -18.30920 -17.63064 -17.23400 -17.10198 -16.78158 -15.82301 -15.74668 -15.24218 -14.88767 -14.75512 -14.65394 -14.32943 -13.99984 -13.92161 -13.85376 -13.22104 -13.04867 -12.88016 -12.61605 -12.55002 -12.39063 -12.09023 -11.77675 -11.58257 -11.27017 -11.22520 -10.96061 -10.69688 -9.80764 -9.23323 -9.04072 -8.30206 -6.32013 0.54095 1.31079 1.32648 1.42832 1.54656 1.89064 2.30588 2.42242 2.46403 3.05930 3.59763 3.80048 4.13282 4.17136 4.35021 4.38835 4.42463 4.43974 4.49343 4.60074 4.71882 4.73445 4.77967 4.94044 5.02827 5.14547 5.19711 5.34710 5.39789 5.59211 5.65353 5.75477 5.78746 5.95162 6.02282 6.49391 6.58719 6.65709 6.82777 7.10221 7.33139 8.86017 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022017 B = 0.005953 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.422591 B = 4702.340070 C = 5510.890345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.107 4.107 3 C 0.195 3.805 4 H -0.001 1.001 5 C -0.506 4.506 6 H 0.042 0.958 7 C 0.023 3.977 8 N -0.944 5.944 9 Si 0.941 3.059 10 H -0.272 1.272 11 H -0.297 1.297 12 H -0.251 1.251 13 N -0.661 5.661 14 C 0.125 3.875 15 C 0.107 3.893 16 N -0.533 5.533 17 H 0.432 0.568 18 C 0.003 3.997 19 C -0.169 4.169 20 C -0.234 4.234 21 C 0.524 3.476 22 O -0.524 6.524 23 O -0.365 6.365 24 C 0.034 3.966 25 H 0.056 0.944 26 H 0.033 0.967 27 H 0.035 0.965 28 H 0.030 0.970 29 H 0.049 0.951 30 H 0.265 0.735 31 H 0.333 0.667 32 H 0.043 0.957 33 H 0.083 0.917 34 H 0.215 0.785 35 H 0.164 0.836 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.720 1.222 20.843 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.145 4.145 3 C 0.086 3.914 4 H 0.016 0.984 5 C -0.544 4.544 6 H 0.060 0.940 7 C -0.175 4.175 8 N -0.584 5.584 9 Si 0.769 3.231 10 H -0.199 1.199 11 H -0.224 1.224 12 H -0.176 1.176 13 N -0.292 5.292 14 C -0.005 4.005 15 C -0.013 4.013 16 N -0.129 5.129 17 H 0.272 0.728 18 C -0.125 4.125 19 C -0.192 4.192 20 C -0.243 4.243 21 C 0.371 3.629 22 O -0.414 6.414 23 O -0.282 6.282 24 C -0.059 4.059 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.151 0.849 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.232 0.768 35 H 0.181 0.819 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.423 0.537 20.565 20.621 hybrid contribution 1.096 -0.142 -1.282 1.692 sum 2.519 0.396 19.283 19.451 Atomic orbital electron populations 1.21283 0.95452 0.98649 1.01322 1.21638 0.97600 0.97394 0.97854 1.19402 0.92464 0.91897 0.87650 0.98380 1.21193 1.31003 1.12056 0.90185 0.93983 1.25607 0.96904 0.99519 0.95511 1.70020 1.47347 1.42452 0.98629 0.85966 0.79618 0.80448 0.77093 1.19851 1.22445 1.17566 1.60360 1.47938 1.16066 1.04805 1.20503 0.93497 0.99000 0.87472 1.20321 0.95943 0.88618 0.96440 1.41646 1.30628 1.16356 1.24308 0.72829 1.22399 0.97001 1.02183 0.90886 1.22306 1.02244 0.93522 1.01084 1.19574 1.03196 0.97866 1.03709 1.20517 0.78350 0.85616 0.78404 1.90884 1.68725 1.45711 1.36110 1.86521 1.46178 1.44366 1.51131 1.23415 0.94623 0.83942 1.03951 0.92454 0.94745 0.94555 0.95228 0.93202 0.92551 0.84903 0.93936 0.89865 0.76835 0.81884 0.93031 0.92301 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.09 9.53 71.98 0.69 -4.41 16 2 C -0.11 -4.96 5.30 30.59 0.16 -4.79 16 3 C 0.20 9.25 1.90 44.17 0.08 9.33 16 4 H 0.00 -0.06 6.75 -2.39 -0.02 -0.08 16 5 C -0.51 -28.45 7.79 25.60 0.20 -28.25 16 6 H 0.04 2.61 7.84 -2.91 -0.02 2.59 16 7 C 0.02 1.31 5.45 84.65 0.46 1.77 16 8 N -0.94 -58.70 13.96 21.45 0.30 -58.40 16 9 Si 0.94 45.81 24.37 68.60 1.67 47.48 16 10 H -0.27 -13.00 6.88 99.48 0.68 -12.32 16 11 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 12 H -0.25 -11.43 6.53 99.48 0.65 -10.78 16 13 N -0.66 -27.24 5.69 -499.47 -2.84 -30.08 16 14 C 0.12 4.23 5.28 85.56 0.45 4.68 16 15 C 0.11 3.08 6.68 42.03 0.28 3.36 16 16 N -0.53 -10.54 5.89 -182.02 -1.07 -11.61 16 17 H 0.43 6.03 8.96 -92.71 -0.83 5.20 16 18 C 0.00 0.05 11.87 83.11 0.99 1.03 16 19 C -0.17 -3.75 11.00 23.63 0.26 -3.49 16 20 C -0.23 -7.11 6.33 -18.82 -0.12 -7.23 16 21 C 0.52 17.88 7.95 70.15 0.56 18.44 16 22 O -0.52 -20.81 14.69 19.66 0.29 -20.52 16 23 O -0.36 -10.52 10.47 -56.98 -0.60 -11.11 16 24 C 0.03 0.76 10.57 113.37 1.20 1.95 16 25 H 0.06 2.69 7.52 -2.39 -0.02 2.67 16 26 H 0.03 1.75 7.04 -2.38 -0.02 1.74 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.03 1.41 3.29 -2.39 -0.01 1.40 16 29 H 0.05 2.16 7.64 -2.39 -0.02 2.14 16 30 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.33 13.82 8.11 -89.70 -0.73 13.10 16 32 H 0.04 1.30 7.93 -2.39 -0.02 1.28 16 33 H 0.08 3.10 6.58 -2.39 -0.02 3.08 16 34 H 0.22 1.53 8.06 -2.91 -0.02 1.50 16 35 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -72.73 313.86 2.41 -70.32 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -0.55 Total: 21.54 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 5.21 Total: -7.61 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -3.61 Total: -100.09 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.31 Total: -31.64 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.67 Total: 47.48 kcal Total: -72.73 2.41 -70.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383994315.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.213 kcal (2) G-P(sol) polarization free energy of solvation -72.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds