Wall clock time and date at job start Mon Mar 30 2020 05:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.46925 * 2 1 4 4 C 1.35545 * 120.49985 * 95.00223 * 3 2 1 5 5 N 1.36162 * 119.25685 * 179.72228 * 4 3 2 6 6 C 1.46504 * 119.84779 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47119 * 90.00167 * 6 5 4 8 8 C 1.52996 * 109.47334 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47324 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47028 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00409 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00003 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99856 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00024 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.47338 * 0.02562 * 14 12 10 16 16 H 1.48509 * 109.47073 * 120.00141 * 14 12 10 17 17 H 1.48502 * 109.47500 * 239.99750 * 14 12 10 18 18 C 1.34571 * 120.29439 * 359.97438 * 5 4 3 19 19 O 1.21981 * 119.47275 * 180.02562 * 18 5 4 20 20 N 1.33272 * 121.05485 * 359.97378 * 18 5 4 21 21 C 1.32431 * 120.72359 * 0.05246 * 20 18 5 22 22 O 1.35155 * 120.16160 * 179.97438 * 21 20 18 23 23 H 1.08989 * 109.47196 * 300.00245 * 1 2 3 24 24 H 1.09004 * 109.46733 * 60.00197 * 1 2 3 25 25 H 1.08993 * 109.47072 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46911 * 239.99782 * 2 1 3 27 27 H 1.08999 * 109.46711 * 120.00259 * 2 1 3 28 28 H 1.08000 * 120.36564 * 359.69637 * 4 3 2 29 29 H 1.08998 * 109.46608 * 209.99661 * 6 5 4 30 30 H 1.08989 * 109.47270 * 329.99858 * 6 5 4 31 31 H 1.09001 * 109.46725 * 299.99736 * 7 6 5 32 32 H 1.09001 * 109.46903 * 59.99553 * 7 6 5 33 33 H 1.08997 * 109.47536 * 300.00625 * 8 7 6 34 34 H 1.09005 * 109.46914 * 59.99729 * 8 7 6 35 35 H 1.08993 * 109.47208 * 300.00792 * 9 8 7 36 36 H 1.09001 * 109.46584 * 60.00348 * 9 8 7 37 37 H 0.97003 * 120.00282 * 180.02562 * 13 12 10 38 38 H 0.96701 * 114.00425 * 359.95605 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3576 2.0355 1.1634 5 7 2.8143 3.3179 1.1335 6 6 3.1692 3.9948 2.3834 7 6 4.6459 3.7458 2.6968 8 6 5.0166 4.4533 4.0017 9 6 6.4932 4.2037 4.3155 10 6 6.8581 4.9001 5.6012 11 1 6.1118 5.4646 6.1403 12 6 8.1452 4.8175 6.0886 13 7 9.0545 4.1313 5.4314 14 14 8.5978 5.6812 7.6818 15 1 7.4044 6.3803 8.2222 16 1 9.0740 4.6799 8.6698 17 1 9.6749 6.6696 7.4205 18 6 2.9412 3.9661 -0.0389 19 8 3.3522 5.1145 -0.0483 20 7 2.6259 3.3731 -1.1900 21 6 2.1773 2.1272 -1.2086 22 8 1.8604 1.5370 -2.3825 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.2553 1.5140 2.1036 29 1 2.9957 5.0658 2.2783 30 1 2.5547 3.6051 3.1948 31 1 4.8193 2.6748 2.8018 32 1 5.2603 4.1356 1.8853 33 1 4.8431 5.5242 3.8965 34 1 4.4021 4.0638 4.8135 35 1 6.6662 3.1328 4.4209 36 1 7.1079 4.5930 3.5039 37 1 9.9599 4.0728 5.7744 38 1 1.9933 2.1024 -3.1556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385200245.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:05 Heat of formation + Delta-G solvation = -89.893499 kcal Electronic energy + Delta-G solvation = -19667.632044 eV Core-core repulsion = 16508.915857 eV Total energy + Delta-G solvation = -3158.716187 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.89082 -39.88948 -38.10145 -37.07055 -35.62023 -35.03985 -34.04091 -30.97917 -29.88577 -27.14381 -25.89316 -25.05062 -23.87717 -22.27198 -21.89282 -20.83176 -19.26042 -18.48159 -17.75932 -17.36591 -16.78031 -16.48344 -16.20922 -15.68240 -15.39300 -15.03034 -14.74912 -14.64558 -14.47430 -14.09150 -13.95413 -13.73886 -13.40017 -12.89700 -12.62793 -12.51058 -12.36879 -12.30184 -12.18791 -11.85910 -11.72157 -11.47587 -11.39702 -11.25252 -11.05077 -10.85901 -10.56912 -9.45550 -8.20694 -6.32086 -0.30611 0.59063 1.39233 1.40227 1.41222 1.54049 2.22702 2.40829 2.62403 3.12727 3.25770 3.59108 3.72375 3.89480 3.95385 4.14060 4.24680 4.34971 4.47381 4.61900 4.65725 4.66452 4.78627 4.92589 5.03713 5.19429 5.22114 5.23161 5.29170 5.35239 5.41132 5.52769 5.54407 5.74384 5.85415 6.14489 6.23704 6.69103 6.86086 7.03364 7.37678 8.91517 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.033321 B = 0.003305 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.108550 B = 8469.886646 C = 8799.486523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C -0.255 4.255 4 C 0.208 3.792 5 N -0.520 5.520 6 C 0.102 3.898 7 C -0.120 4.120 8 C -0.093 4.093 9 C 0.021 3.979 10 C -0.542 4.542 11 H 0.064 0.936 12 C -0.005 4.005 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.259 1.259 16 H -0.275 1.275 17 H -0.283 1.283 18 C 0.640 3.360 19 O -0.593 6.593 20 N -0.654 5.654 21 C 0.462 3.538 22 O -0.436 6.436 23 H 0.059 0.941 24 H 0.042 0.958 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.231 0.769 29 H 0.083 0.917 30 H 0.144 0.856 31 H 0.077 0.923 32 H 0.028 0.972 33 H 0.046 0.954 34 H 0.077 0.923 35 H -0.002 1.002 36 H -0.023 1.023 37 H 0.263 0.737 38 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.566 -12.511 -9.666 25.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 C -0.263 4.263 4 C 0.074 3.926 5 N -0.234 5.234 6 C -0.019 4.019 7 C -0.158 4.158 8 C -0.131 4.131 9 C -0.016 4.016 10 C -0.580 4.580 11 H 0.083 0.917 12 C -0.202 4.202 13 N -0.577 5.577 14 Si 0.791 3.209 15 H -0.183 1.183 16 H -0.201 1.201 17 H -0.208 1.208 18 C 0.342 3.658 19 O -0.472 6.472 20 N -0.413 5.413 21 C 0.263 3.737 22 O -0.232 6.232 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.118 0.882 28 H 0.248 0.752 29 H 0.101 0.899 30 H 0.162 0.838 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.016 0.984 36 H -0.004 1.004 37 H 0.072 0.928 38 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -20.141 -11.707 -10.009 25.355 hybrid contribution 1.033 0.805 0.375 1.362 sum -19.108 -10.902 -9.634 24.016 Atomic orbital electron populations 1.21770 0.94402 1.02533 1.01698 1.20207 0.96175 0.87849 1.04656 1.19758 1.16046 1.01941 0.88570 1.23139 0.85267 0.82133 1.02084 1.46489 1.52690 1.13734 1.10474 1.22212 0.96902 0.99525 0.83304 1.21820 0.94702 1.01612 0.97681 1.21350 0.96938 0.99243 0.95604 1.19027 0.92586 0.95317 0.94647 1.21771 0.95986 1.31835 1.08367 0.91746 1.26037 0.96619 0.96216 1.01315 1.70116 1.03638 1.42842 1.41059 0.85373 0.78422 0.78264 0.78833 1.18264 1.20101 1.20849 1.17549 0.80622 0.86831 0.80813 1.90972 1.51853 1.18359 1.86052 1.69512 1.31539 1.13170 1.27048 1.20596 0.79510 0.85803 0.87809 1.84974 1.79565 1.43256 1.15388 0.92234 0.93861 0.90987 0.90352 0.88183 0.75233 0.89872 0.83848 0.90413 0.95267 0.93511 0.90412 0.98387 1.00435 0.92835 0.71211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.90 71.98 0.71 -0.47 16 2 C -0.05 -0.45 5.84 29.85 0.17 -0.27 16 3 C -0.26 -3.85 5.13 -19.88 -0.10 -3.96 16 4 C 0.21 3.07 10.04 83.40 0.84 3.90 16 5 N -0.52 -12.87 2.59 -657.69 -1.71 -14.58 16 6 C 0.10 2.51 5.35 86.38 0.46 2.97 16 7 C -0.12 -3.90 5.54 30.59 0.17 -3.73 16 8 C -0.09 -3.64 5.15 30.59 0.16 -3.48 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 11 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 12 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 13 N -0.94 -57.83 13.29 21.45 0.28 -57.54 16 14 Si 0.97 44.43 29.54 68.60 2.03 46.45 16 15 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 C 0.64 22.09 8.34 179.58 1.50 23.59 16 19 O -0.59 -26.48 16.72 -5.25 -0.09 -26.57 16 20 N -0.65 -19.62 10.40 -438.81 -4.56 -24.19 16 21 C 0.46 9.44 7.89 85.21 0.67 10.11 16 22 O -0.44 -6.08 12.79 -84.33 -1.08 -7.15 16 23 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 24 H 0.04 0.46 8.14 -2.38 -0.02 0.44 16 25 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.08 0.76 7.76 -2.39 -0.02 0.74 16 27 H 0.10 0.46 8.06 -2.39 -0.02 0.44 16 28 H 0.23 0.98 8.06 -2.91 -0.02 0.95 16 29 H 0.08 2.43 7.38 -2.39 -0.02 2.42 16 30 H 0.14 2.09 8.03 -2.39 -0.02 2.07 16 31 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 35 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 36 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 37 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.43 3.40 8.98 -74.06 -0.66 2.74 16 Total: -1.00 -84.13 326.95 0.69 -83.44 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: 0.39 Total: 0.66 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 5.42 Total: -0.52 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -5.98 Total: -96.31 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.17 Total: -33.73 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -84.13 0.69 -83.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385200245.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.452 kcal (2) G-P(sol) polarization free energy of solvation -84.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds