Wall clock time and date at job start Mon Mar 30 2020 05:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36009 * 120.12657 * 2 1 4 4 C 1.50698 * 120.36069 * 359.97438 * 3 2 1 5 5 C 1.40973 * 119.28254 * 180.02562 * 3 2 1 6 6 O 1.22098 * 120.24070 * 180.02562 * 5 3 2 7 7 N 1.34820 * 119.51643 * 359.97438 * 5 3 2 8 8 C 1.46508 * 119.89469 * 179.97438 * 7 5 3 9 9 C 1.53001 * 109.46830 * 90.00443 * 8 7 5 10 10 C 1.53002 * 109.47322 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46831 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46615 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00253 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00226 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99751 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00370 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46987 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47173 * 120.00148 * 16 14 12 19 19 H 1.48503 * 109.47012 * 240.00166 * 16 14 12 20 20 N 1.39966 * 120.21244 * 359.75417 * 7 5 3 21 21 C 1.30948 * 120.74233 * 0.52593 * 20 7 5 22 22 O 1.35811 * 119.74468 * 179.74120 * 21 20 7 23 23 H 1.09000 * 109.47397 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47564 * 299.97839 * 1 2 3 25 25 H 1.08998 * 109.47738 * 59.97728 * 1 2 3 26 26 H 1.09000 * 109.46671 * 90.00068 * 4 3 2 27 27 H 1.09003 * 109.47046 * 210.00295 * 4 3 2 28 28 H 1.08997 * 109.47083 * 330.00063 * 4 3 2 29 29 H 1.09002 * 109.47194 * 210.00152 * 8 7 5 30 30 H 1.09000 * 109.47403 * 330.00650 * 8 7 5 31 31 H 1.09000 * 109.46880 * 300.00362 * 9 8 7 32 32 H 1.09004 * 109.47393 * 59.99769 * 9 8 7 33 33 H 1.08994 * 109.46900 * 300.00162 * 10 9 8 34 34 H 1.08997 * 109.46306 * 60.00184 * 10 9 8 35 35 H 1.08994 * 109.47580 * 299.99831 * 11 10 9 36 36 H 1.08997 * 109.47456 * 60.00973 * 11 10 9 37 37 H 0.96996 * 119.99794 * 180.02562 * 15 14 12 38 38 H 0.96700 * 114.00435 * 359.73156 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1896 1.1764 0.0000 4 6 1.4472 2.4878 -0.0006 5 6 3.5992 1.1556 -0.0005 6 8 4.2296 2.2013 -0.0001 7 7 4.2460 -0.0273 -0.0005 8 6 5.7108 -0.0585 -0.0017 9 6 6.2217 -0.0689 1.4405 10 6 7.7514 -0.1022 1.4394 11 6 8.2622 -0.1119 2.8815 12 6 9.7689 -0.1453 2.8804 13 1 10.3081 -0.1579 1.9448 14 6 10.4591 -0.1587 4.0740 15 7 9.8025 -0.1429 5.2134 16 14 12.3266 -0.1994 4.0726 17 1 12.8204 -0.2127 2.6722 18 1 12.8484 1.0029 4.7707 19 1 12.7955 -1.4215 4.7739 20 7 3.5227 -1.2256 0.0052 21 6 2.2133 -1.2171 0.0003 22 8 1.5319 -2.3919 0.0007 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5135 0.8902 25 1 -0.3634 0.5142 -0.8897 26 1 1.2679 2.8042 1.0270 27 1 2.0429 3.2423 -0.5144 28 1 0.4940 2.3655 -0.5147 29 1 6.0547 -0.9563 -0.5154 30 1 6.0927 0.8233 -0.5161 31 1 5.8778 0.8288 1.9542 32 1 5.8398 -0.9507 1.9550 33 1 8.0948 -1.0001 0.9258 34 1 8.1335 0.7795 0.9249 35 1 7.9187 0.7862 3.3948 36 1 7.8801 -0.9933 3.3965 37 1 10.2880 -0.1520 6.0531 38 1 2.0986 -3.1754 0.0006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385230109.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:37 Heat of formation + Delta-G solvation = -66.506976 kcal Electronic energy + Delta-G solvation = -19747.815792 eV Core-core repulsion = 16590.113721 eV Total energy + Delta-G solvation = -3157.702071 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.33457 -39.82971 -37.67487 -37.23102 -36.15973 -34.52911 -32.52355 -31.11840 -29.90607 -28.21105 -26.64552 -24.44064 -23.75939 -22.67211 -21.91324 -20.60497 -18.69804 -18.47405 -17.54161 -17.20695 -16.80074 -16.48147 -16.31309 -15.50087 -15.32148 -14.84491 -14.64799 -14.43322 -14.22951 -14.01062 -13.77810 -13.71380 -13.44520 -13.28276 -12.89039 -12.81495 -12.62926 -12.41749 -12.31303 -12.23218 -12.11874 -11.49182 -11.41366 -11.20305 -10.87140 -10.58256 -10.47207 -9.48468 -8.21640 -6.33536 -0.69646 0.73403 0.92305 1.39067 1.40021 1.53730 2.19742 2.31130 2.40226 3.05580 3.11268 3.58506 3.71182 3.92938 3.94841 4.14065 4.23067 4.37557 4.48727 4.58775 4.61140 4.66813 4.76480 4.79894 4.89098 4.96620 5.01848 5.05850 5.13870 5.18017 5.26258 5.39132 5.50127 5.70767 5.82746 6.19141 6.21970 6.56551 6.82519 6.83786 7.36024 8.90828 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.033003 B = 0.003407 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.200102 B = 8216.903065 C = 8567.509675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.053 4.053 3 C -0.138 4.138 4 C -0.097 4.097 5 C 0.481 3.519 6 O -0.576 6.576 7 N -0.396 5.396 8 C 0.136 3.864 9 C -0.115 4.115 10 C -0.093 4.093 11 C 0.023 3.977 12 C -0.543 4.543 13 H 0.064 0.936 14 C -0.005 4.005 15 N -0.936 5.936 16 Si 0.970 3.030 17 H -0.259 1.259 18 H -0.279 1.279 19 H -0.276 1.276 20 N -0.320 5.320 21 C 0.317 3.683 22 O -0.438 6.438 23 H 0.088 0.912 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.037 0.963 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.054 0.946 35 H -0.017 1.017 36 H -0.009 1.009 37 H 0.264 0.736 38 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.728 -2.716 -13.815 26.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.059 4.059 3 C -0.148 4.148 4 C -0.154 4.154 5 C 0.277 3.723 6 O -0.457 6.457 7 N -0.217 5.217 8 C 0.015 3.985 9 C -0.153 4.153 10 C -0.131 4.131 11 C -0.014 4.014 12 C -0.581 4.581 13 H 0.082 0.918 14 C -0.202 4.202 15 N -0.577 5.577 16 Si 0.794 3.206 17 H -0.183 1.183 18 H -0.205 1.205 19 H -0.202 1.202 20 N -0.156 5.156 21 C 0.100 3.900 22 O -0.235 6.235 23 H 0.107 0.893 24 H 0.115 0.885 25 H 0.122 0.878 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.113 0.887 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.001 0.999 36 H 0.010 0.990 37 H 0.072 0.928 38 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -22.202 -2.460 -13.654 26.180 hybrid contribution 1.164 0.050 0.661 1.339 sum -21.038 -2.410 -12.993 24.844 Atomic orbital electron populations 1.20983 0.85585 1.05522 1.04815 1.20398 1.00599 0.88532 0.96378 1.21340 0.91486 0.98978 1.03008 1.20733 1.00228 0.90328 1.04083 1.18093 0.90556 0.83666 0.79947 1.90965 1.69688 1.31123 1.53939 1.49206 1.07846 1.01312 1.63307 1.21754 0.73751 1.05090 0.97859 1.21778 0.96816 1.00875 0.95869 1.21351 0.92494 1.01408 0.97813 1.19010 0.95179 0.94455 0.92751 1.21756 0.93068 1.50342 0.92905 0.91763 1.26069 1.04322 0.94675 0.95161 1.70126 1.37687 1.51815 0.98044 0.85327 0.78752 0.77791 0.78739 1.18315 1.20462 1.20167 1.75028 1.07539 1.09279 1.23766 1.20239 0.87086 0.88807 0.93856 1.85155 1.34849 1.13912 1.89553 0.89283 0.88456 0.87783 0.89301 0.91570 0.86888 0.86862 0.88712 0.94371 0.92297 0.91412 0.92726 0.99866 0.99034 0.92772 0.71414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 8.80 71.23 0.63 -0.36 16 2 C -0.05 -0.94 5.89 -19.78 -0.12 -1.06 16 3 C -0.14 -3.14 5.90 -19.71 -0.12 -3.26 16 4 C -0.10 -1.60 9.40 71.24 0.67 -0.93 16 5 C 0.48 15.44 7.49 84.90 0.64 16.08 16 6 O -0.58 -22.56 15.86 -5.64 -0.09 -22.65 16 7 N -0.40 -12.18 3.51 -472.31 -1.66 -13.83 16 8 C 0.14 4.30 5.71 86.38 0.49 4.80 16 9 C -0.11 -4.39 5.54 30.60 0.17 -4.22 16 10 C -0.09 -4.00 5.15 30.59 0.16 -3.84 16 11 C 0.02 1.30 4.97 29.85 0.15 1.45 16 12 C -0.54 -32.10 9.11 25.60 0.23 -31.87 16 13 H 0.06 3.61 7.74 -2.91 -0.02 3.58 16 14 C 0.00 -0.30 5.46 84.65 0.46 0.17 16 15 N -0.94 -59.07 13.29 21.45 0.28 -58.78 16 16 Si 0.97 45.46 29.54 68.60 2.03 47.48 16 17 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 20 N -0.32 -8.12 11.46 -170.57 -1.96 -10.08 16 21 C 0.32 6.15 7.93 85.43 0.68 6.83 16 22 O -0.44 -5.41 12.38 -91.43 -1.13 -6.54 16 23 H 0.09 0.71 7.03 -2.39 -0.02 0.70 16 24 H 0.10 0.64 8.13 -2.39 -0.02 0.62 16 25 H 0.10 0.52 7.48 -2.39 -0.02 0.50 16 26 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.33 7.64 -2.39 -0.02 1.32 16 28 H 0.11 0.97 6.63 -2.39 -0.02 0.96 16 29 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 30 H 0.09 3.08 7.42 -2.39 -0.02 3.07 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 35 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 36 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 37 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.43 2.38 8.97 -74.06 -0.66 1.72 16 Total: -1.00 -78.46 323.20 1.92 -76.54 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 0.40 Total: 4.08 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 4.04 Total: -16.22 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -3.33 Total: -82.69 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -1.22 Total: -29.19 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -78.46 1.92 -76.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385230109.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.033 kcal (2) G-P(sol) polarization free energy of solvation -78.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds