Wall clock time and date at job start Mon Mar 30 2020 04:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86798 * 119.99865 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99916 * 3 2 1 5 5 H 1.48503 * 109.47261 * 150.00097 * 3 2 1 6 6 H 1.48500 * 109.47454 * 30.00090 * 3 2 1 7 7 C 1.39585 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99355 * 179.97438 * 7 2 1 9 9 N 1.36117 * 120.00254 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00087 * 179.97438 * 9 7 2 11 11 O 1.21510 * 119.99915 * 0.02562 * 10 9 7 12 12 C 1.48830 * 120.00106 * 180.02562 * 10 9 7 13 13 O 1.21439 * 119.99944 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99749 * 180.02562 * 12 10 9 15 15 C 1.46512 * 119.99525 * 180.02562 * 14 12 10 16 16 H 1.08993 * 115.55050 * 350.69396 * 15 14 12 17 17 C 1.53036 * 117.50001 * 136.44526 * 15 14 12 18 18 C 1.52807 * 59.96545 * 107.47110 * 17 15 14 19 19 C 1.53151 * 117.75107 * 107.62742 * 18 17 15 20 20 C 1.53175 * 108.88604 * 199.61547 * 19 18 17 21 21 C 1.52935 * 109.45605 * 303.44157 * 20 19 18 22 22 C 1.52946 * 109.82397 * 62.98163 * 21 20 19 23 23 C 1.53149 * 117.74910 * 252.36855 * 18 17 15 24 24 H 0.96993 * 120.00069 * 180.02562 * 1 2 3 25 25 H 0.96997 * 119.99684 * 0.02562 * 9 7 2 26 26 H 0.96997 * 120.00587 * 0.02562 * 14 12 10 27 27 H 1.08999 * 117.49504 * 214.95034 * 17 15 14 28 28 H 1.08997 * 117.50513 * 359.97438 * 17 15 14 29 29 H 1.08998 * 109.56722 * 319.43864 * 19 18 17 30 30 H 1.08998 * 109.56654 * 79.79646 * 19 18 17 31 31 H 1.08994 * 109.47598 * 183.44168 * 20 19 18 32 32 H 1.09007 * 109.47415 * 63.43542 * 20 19 18 33 33 H 1.09006 * 109.41011 * 302.87073 * 21 20 19 34 34 H 1.09003 * 109.41532 * 183.09083 * 21 20 19 35 35 H 1.09004 * 109.47826 * 177.02576 * 22 21 20 36 36 H 1.08993 * 109.48003 * 57.00666 * 22 21 20 37 37 H 1.09002 * 109.56965 * 280.19544 * 23 18 17 38 38 H 1.09007 * 109.57098 * 40.43154 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4916 2.0465 -1.4001 5 1 3.5417 1.4402 0.7000 6 1 1.4416 2.6527 0.7000 7 6 2.0080 -1.2089 -0.0005 8 1 3.0880 -1.2088 -0.0010 9 7 1.3274 -2.3877 -0.0005 10 6 2.0013 -3.5548 -0.0016 11 8 3.2164 -3.5548 -0.0021 12 6 1.2572 -4.8438 -0.0022 13 8 0.0428 -4.8438 -0.0022 14 7 1.9311 -6.0109 -0.0027 15 6 1.1985 -7.2797 -0.0038 16 1 0.1230 -7.2017 0.1548 17 6 1.6975 -8.3830 -0.9397 18 6 1.9095 -8.5057 0.5686 19 6 1.0609 -9.5306 1.3269 20 6 1.0568 -9.1671 2.8149 21 6 2.4963 -9.1026 3.3275 22 6 3.2560 -7.9913 2.6015 23 6 3.3309 -8.3171 1.1066 24 1 -0.4850 -0.8400 0.0004 25 1 0.3575 -2.3876 -0.0005 26 1 2.9011 -6.0110 -0.0023 27 1 0.9500 -9.0310 -1.3973 28 1 2.5705 -8.1646 -1.5548 29 1 0.0404 -9.5142 0.9443 30 1 1.4861 -10.5255 1.1953 31 1 0.5062 -9.9246 3.3725 32 1 0.5789 -8.1969 2.9507 33 1 2.9891 -10.0576 3.1446 34 1 2.4909 -8.8981 4.3981 35 1 4.2647 -7.9152 3.0078 36 1 2.7355 -7.0439 2.7413 37 1 3.9011 -9.2346 0.9611 38 1 3.8163 -7.4977 0.5763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387161703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:14 Heat of formation + Delta-G solvation = -70.285720 kcal Electronic energy + Delta-G solvation = -20296.614974 eV Core-core repulsion = 17138.749044 eV Total energy + Delta-G solvation = -3157.865930 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.19783 -38.99659 -37.24533 -35.38887 -34.63188 -32.47134 -31.22570 -30.94252 -27.50262 -25.73791 -23.61401 -22.94648 -21.48974 -21.18614 -19.77131 -18.88793 -18.23608 -17.43161 -16.26132 -15.64238 -14.93472 -14.81402 -14.69123 -14.48294 -14.05400 -13.82412 -13.56676 -13.34494 -13.07679 -12.69539 -12.47979 -12.31809 -11.81540 -11.41279 -11.38568 -11.22118 -11.09695 -10.96334 -10.57234 -10.49473 -10.30661 -10.23883 -10.08481 -9.76893 -9.70296 -8.49338 -8.37047 -8.30759 -7.04606 -4.08073 2.28995 3.17463 3.26609 3.29354 3.46148 3.70784 4.13153 4.22939 4.53168 4.56981 4.70422 4.76487 4.84860 4.97828 5.09058 5.13982 5.22631 5.25194 5.38822 5.50828 5.63378 5.71319 5.72495 5.75533 5.80639 5.90242 6.00258 6.06744 6.07887 6.12468 6.27411 6.34876 6.73334 7.47007 7.71114 7.84156 8.23078 8.41493 8.66834 9.20481 9.64375 10.37349 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.033507 B = 0.004075 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.433313 B = 6869.013466 C = 7046.940482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.000 4.000 3 Si 1.099 2.901 4 H -0.280 1.280 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.383 4.383 8 H 0.110 0.890 9 N -0.511 5.511 10 C 0.395 3.605 11 O -0.592 6.592 12 C 0.517 3.483 13 O -0.549 6.549 14 N -0.683 5.683 15 C 0.094 3.906 16 H 0.135 0.865 17 C -0.187 4.187 18 C -0.130 4.130 19 C -0.078 4.078 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.081 4.081 24 H 0.271 0.729 25 H 0.388 0.612 26 H 0.410 0.590 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.043 -17.157 2.991 17.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.208 4.208 3 Si 0.923 3.077 4 H -0.206 1.206 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.514 4.514 8 H 0.127 0.873 9 N -0.146 5.146 10 C 0.180 3.820 11 O -0.480 6.480 12 C 0.302 3.698 13 O -0.426 6.426 14 N -0.335 5.335 15 C -0.013 4.013 16 H 0.153 0.847 17 C -0.226 4.226 18 C -0.131 4.131 19 C -0.115 4.115 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.119 4.119 24 H 0.083 0.917 25 H 0.223 0.777 26 H 0.248 0.752 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.759 -15.465 3.000 15.993 hybrid contribution 0.035 -1.832 -0.122 1.836 sum 2.793 -17.296 2.878 17.755 Atomic orbital electron populations 1.70664 1.06952 1.30667 1.42018 1.26943 0.96319 1.03199 0.94294 0.83044 0.74488 0.72634 0.77558 1.20612 1.20439 1.20250 1.20798 0.95438 0.83552 1.51586 0.87251 1.41595 1.09486 1.05145 1.58387 1.18813 0.87818 0.83911 0.91441 1.90588 1.12762 1.86454 1.58167 1.20667 0.87475 0.85789 0.75842 1.90668 1.14100 1.88072 1.49734 1.45104 1.10657 1.03617 1.74114 1.21706 0.97038 0.79564 1.02944 0.84742 1.23592 1.03941 1.02516 0.92540 1.22020 0.97270 0.99010 0.94799 1.21113 0.98612 0.97109 0.94688 1.21530 0.96889 1.01862 0.95377 1.21472 0.95700 0.98839 0.99387 1.21517 1.00302 0.99149 0.94650 1.21080 0.93464 1.01429 0.95932 0.91677 0.77696 0.75230 0.88103 0.88422 0.91677 0.91416 0.92093 0.91697 0.92223 0.92238 0.91903 0.91537 0.91408 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.94 13.66 55.53 0.76 -23.18 16 2 C 0.00 0.00 5.51 -17.40 -0.10 -0.10 16 3 Si 1.10 23.15 29.93 -169.99 -5.09 18.06 16 4 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.38 -10.65 9.67 -15.15 -0.15 -10.80 16 8 H 0.11 3.13 7.15 -52.49 -0.38 2.76 16 9 N -0.51 -13.60 5.24 -11.59 -0.06 -13.66 16 10 C 0.40 10.01 7.82 -11.88 -0.09 9.92 16 11 O -0.59 -15.99 16.03 5.36 0.09 -15.90 16 12 C 0.52 11.28 7.87 -11.88 -0.09 11.19 16 13 O -0.55 -12.74 16.03 5.42 0.09 -12.65 16 14 N -0.68 -11.88 5.34 -54.49 -0.29 -12.17 16 15 C 0.09 1.34 6.11 -67.99 -0.42 0.92 16 16 H 0.13 2.06 7.40 -51.93 -0.38 1.68 16 17 C -0.19 -2.11 9.92 -26.81 -0.27 -2.38 16 18 C -0.13 -1.44 1.97 -154.53 -0.31 -1.75 16 19 C -0.08 -0.74 5.67 -26.56 -0.15 -0.89 16 20 C -0.12 -1.16 5.93 -26.67 -0.16 -1.32 16 21 C -0.12 -1.11 5.82 -26.79 -0.16 -1.26 16 22 C -0.12 -1.31 5.93 -26.66 -0.16 -1.47 16 23 C -0.08 -0.88 5.43 -26.56 -0.14 -1.03 16 24 H 0.27 7.42 6.78 -40.82 -0.28 7.14 16 25 H 0.39 10.09 6.18 -40.82 -0.25 9.83 16 26 H 0.41 6.87 6.34 -40.82 -0.26 6.61 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.75 6.28 -51.93 -0.33 0.43 16 LS Contribution 314.85 15.07 4.74 4.74 Total: -1.00 -30.80 314.85 -7.26 -38.06 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -5.32 Total: 15.66 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.18 Total: 1.04 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.41 Total: -49.01 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: 0.17 Total: -28.56 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.09 Total: 18.06 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.80 -7.26 -38.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387161703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.221 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds