Wall clock time and date at job start Mon Mar 30 2020 04:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86798 * 119.99865 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99916 * 3 2 1 5 5 H 1.48503 * 109.47261 * 150.00097 * 3 2 1 6 6 H 1.48500 * 109.47454 * 30.00090 * 3 2 1 7 7 C 1.39585 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99355 * 179.97438 * 7 2 1 9 9 N 1.36117 * 120.00254 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00087 * 179.97438 * 9 7 2 11 11 O 1.21510 * 119.99915 * 0.02562 * 10 9 7 12 12 C 1.48830 * 120.00106 * 180.02562 * 10 9 7 13 13 O 1.21439 * 119.99944 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99749 * 180.02562 * 12 10 9 15 15 C 1.46512 * 119.99525 * 180.02562 * 14 12 10 16 16 H 1.08993 * 115.55050 * 350.69396 * 15 14 12 17 17 C 1.53036 * 117.50001 * 136.44526 * 15 14 12 18 18 C 1.52807 * 59.96545 * 107.47110 * 17 15 14 19 19 C 1.53151 * 117.75107 * 107.62742 * 18 17 15 20 20 C 1.53175 * 108.88604 * 199.61547 * 19 18 17 21 21 C 1.52935 * 109.45605 * 303.44157 * 20 19 18 22 22 C 1.52946 * 109.82397 * 62.98163 * 21 20 19 23 23 C 1.53149 * 117.74910 * 252.36855 * 18 17 15 24 24 H 0.96993 * 120.00069 * 180.02562 * 1 2 3 25 25 H 0.96997 * 119.99684 * 0.02562 * 9 7 2 26 26 H 0.96997 * 120.00587 * 0.02562 * 14 12 10 27 27 H 1.08999 * 117.49504 * 214.95034 * 17 15 14 28 28 H 1.08997 * 117.50513 * 359.97438 * 17 15 14 29 29 H 1.08998 * 109.56722 * 319.43864 * 19 18 17 30 30 H 1.08998 * 109.56654 * 79.79646 * 19 18 17 31 31 H 1.08994 * 109.47598 * 183.44168 * 20 19 18 32 32 H 1.09007 * 109.47415 * 63.43542 * 20 19 18 33 33 H 1.09006 * 109.41011 * 302.87073 * 21 20 19 34 34 H 1.09003 * 109.41532 * 183.09083 * 21 20 19 35 35 H 1.09004 * 109.47826 * 177.02576 * 22 21 20 36 36 H 1.08993 * 109.48003 * 57.00666 * 22 21 20 37 37 H 1.09002 * 109.56965 * 280.19544 * 23 18 17 38 38 H 1.09007 * 109.57098 * 40.43154 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4916 2.0465 -1.4001 5 1 3.5417 1.4402 0.7000 6 1 1.4416 2.6527 0.7000 7 6 2.0080 -1.2089 -0.0005 8 1 3.0880 -1.2088 -0.0010 9 7 1.3274 -2.3877 -0.0005 10 6 2.0013 -3.5548 -0.0016 11 8 3.2164 -3.5548 -0.0021 12 6 1.2572 -4.8438 -0.0022 13 8 0.0428 -4.8438 -0.0022 14 7 1.9311 -6.0109 -0.0027 15 6 1.1985 -7.2797 -0.0038 16 1 0.1230 -7.2017 0.1548 17 6 1.6975 -8.3830 -0.9397 18 6 1.9095 -8.5057 0.5686 19 6 1.0609 -9.5306 1.3269 20 6 1.0568 -9.1671 2.8149 21 6 2.4963 -9.1026 3.3275 22 6 3.2560 -7.9913 2.6015 23 6 3.3309 -8.3171 1.1066 24 1 -0.4850 -0.8400 0.0004 25 1 0.3575 -2.3876 -0.0005 26 1 2.9011 -6.0110 -0.0023 27 1 0.9500 -9.0310 -1.3973 28 1 2.5705 -8.1646 -1.5548 29 1 0.0404 -9.5142 0.9443 30 1 1.4861 -10.5255 1.1953 31 1 0.5062 -9.9246 3.3725 32 1 0.5789 -8.1969 2.9507 33 1 2.9891 -10.0576 3.1446 34 1 2.4909 -8.8981 4.3981 35 1 4.2647 -7.9152 3.0078 36 1 2.7355 -7.0439 2.7413 37 1 3.9011 -9.2346 0.9611 38 1 3.8163 -7.4977 0.5763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387161703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:13 Heat of formation + Delta-G solvation = -90.842219 kcal Electronic energy + Delta-G solvation = -20297.506371 eV Core-core repulsion = 17138.749044 eV Total energy + Delta-G solvation = -3158.757326 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.65999 -40.45349 -39.08870 -36.87717 -36.30330 -33.91165 -33.24860 -31.80726 -28.47821 -27.64430 -25.37962 -23.80847 -22.83509 -22.03009 -21.48451 -20.38542 -20.00148 -19.03316 -17.85587 -16.91938 -16.75962 -16.64053 -16.07946 -15.52111 -15.40115 -15.12323 -14.94811 -14.78143 -14.44222 -13.85062 -13.52731 -13.50677 -13.18105 -12.90266 -12.69817 -12.51514 -12.42416 -12.07429 -12.02974 -11.89650 -11.88369 -11.69743 -11.44089 -11.05795 -10.65392 -10.38856 -10.34830 -9.78472 -9.18228 -6.26264 0.43528 1.51280 1.61013 1.63477 1.84928 2.24018 2.38947 2.77919 3.01910 3.06988 3.57733 3.65651 3.73410 3.77978 3.88540 4.13231 4.22687 4.38663 4.41479 4.57222 4.65124 4.71719 4.84803 4.92096 4.94512 5.04939 5.09858 5.23199 5.26253 5.29324 5.34281 5.37132 5.44405 5.52642 5.68120 6.00044 6.27177 6.41621 6.85136 7.12814 7.55672 8.25646 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.033507 B = 0.004075 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.433313 B = 6869.013466 C = 7046.940482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C -0.031 4.031 3 Si 1.145 2.855 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.416 4.416 8 H 0.095 0.905 9 N -0.524 5.524 10 C 0.395 3.605 11 O -0.610 6.610 12 C 0.521 3.479 13 O -0.567 6.567 14 N -0.661 5.661 15 C 0.051 3.949 16 H 0.121 0.879 17 C -0.165 4.165 18 C -0.108 4.108 19 C -0.077 4.077 20 C -0.120 4.120 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.084 4.084 24 H 0.262 0.738 25 H 0.388 0.612 26 H 0.414 0.586 27 H 0.123 0.877 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.034 0.966 37 H 0.093 0.907 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.865 -19.219 2.912 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.233 4.233 3 Si 0.962 3.038 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.546 4.546 8 H 0.113 0.887 9 N -0.160 5.160 10 C 0.180 3.820 11 O -0.499 6.499 12 C 0.305 3.695 13 O -0.446 6.446 14 N -0.312 5.312 15 C -0.054 4.054 16 H 0.139 0.861 17 C -0.203 4.203 18 C -0.110 4.110 19 C -0.114 4.114 20 C -0.158 4.158 21 C -0.151 4.151 22 C -0.158 4.158 23 C -0.121 4.121 24 H 0.073 0.927 25 H 0.223 0.777 26 H 0.252 0.748 27 H 0.141 0.859 28 H 0.121 0.879 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.112 0.888 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.586 -17.588 2.919 18.186 hybrid contribution -0.182 -1.380 -0.078 1.394 sum 3.404 -18.969 2.841 19.480 Atomic orbital electron populations 1.70763 1.07643 1.30173 1.43431 1.28461 0.96318 1.06041 0.92462 0.82536 0.73812 0.68875 0.78614 1.18895 1.19236 1.19426 1.20880 0.95025 0.84708 1.53941 0.88738 1.41677 1.09511 1.05515 1.59258 1.19530 0.87866 0.85012 0.89607 1.90554 1.13765 1.87194 1.58401 1.20005 0.87027 0.85792 0.76723 1.90659 1.14491 1.88220 1.51257 1.45021 1.10837 1.03636 1.71715 1.21979 0.96560 0.78996 1.07848 0.86117 1.23695 1.04122 0.99807 0.92685 1.22140 0.97160 0.96516 0.95160 1.21189 0.98716 0.97504 0.94005 1.21544 0.97122 1.01082 0.96044 1.21467 0.95360 0.98982 0.99275 1.21526 1.00630 0.98352 0.95324 1.21148 0.93382 1.02173 0.95435 0.92672 0.77664 0.74788 0.85863 0.87926 0.91281 0.88918 0.90270 0.94290 0.90189 0.92040 0.91143 0.94754 0.88844 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.64 13.66 21.76 0.30 -49.34 16 2 C -0.03 -1.64 5.51 85.14 0.47 -1.17 16 3 Si 1.15 46.28 29.93 68.60 2.05 48.33 16 4 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 5 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 6 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.42 -23.78 9.67 84.35 0.82 -22.96 16 8 H 0.09 5.59 7.15 -2.91 -0.02 5.57 16 9 N -0.52 -28.93 5.24 -308.87 -1.62 -30.55 16 10 C 0.39 20.59 7.82 87.08 0.68 21.27 16 11 O -0.61 -33.76 16.03 -3.75 -0.06 -33.82 16 12 C 0.52 23.29 7.87 87.08 0.69 23.97 16 13 O -0.57 -27.03 16.03 -3.52 -0.06 -27.09 16 14 N -0.66 -23.13 5.34 -444.63 -2.37 -25.50 16 15 C 0.05 1.42 6.11 44.95 0.27 1.69 16 16 H 0.12 3.71 7.40 -2.39 -0.02 3.69 16 17 C -0.16 -3.27 9.92 30.54 0.30 -2.96 16 18 C -0.11 -2.16 1.97 -52.20 -0.10 -2.27 16 19 C -0.08 -1.22 5.67 30.70 0.17 -1.05 16 20 C -0.12 -2.10 5.93 30.63 0.18 -1.91 16 21 C -0.11 -1.89 5.82 30.55 0.18 -1.71 16 22 C -0.12 -2.51 5.93 30.64 0.18 -2.33 16 23 C -0.08 -1.63 5.43 30.71 0.17 -1.46 16 24 H 0.26 14.80 6.78 -92.71 -0.63 14.17 16 25 H 0.39 21.09 6.18 -92.71 -0.57 20.52 16 26 H 0.41 13.87 6.34 -92.71 -0.59 13.28 16 27 H 0.12 1.94 8.14 -2.39 -0.02 1.93 16 28 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 38 H 0.05 1.13 6.28 -2.38 -0.01 1.11 16 Total: -1.00 -67.82 314.85 2.31 -65.51 By element: Atomic # 1 Polarization: 43.29 SS G_CDS: 0.06 Total: 43.36 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 4.01 Total: 9.10 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -3.69 Total: -105.39 kcal Atomic # 8 Polarization: -60.79 SS G_CDS: -0.12 Total: -60.91 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.05 Total: 48.33 kcal Total: -67.82 2.31 -65.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387161703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.331 kcal (2) G-P(sol) polarization free energy of solvation -67.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds