Wall clock time and date at job start Mon Mar 30 2020 04:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00242 * 2 1 4 4 H 1.48500 * 109.47248 * 270.00642 * 3 2 1 5 5 H 1.48509 * 109.47159 * 30.00278 * 3 2 1 6 6 H 1.48494 * 109.47484 * 150.00211 * 3 2 1 7 7 C 1.37882 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00367 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99720 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46952 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47033 * 180.02562 * 10 9 7 12 12 C 1.46846 * 111.00160 * 69.63991 * 11 10 9 13 13 C 1.53037 * 109.52175 * 174.16212 * 12 11 10 14 14 H 1.08996 * 109.50638 * 179.12372 * 13 12 11 15 15 N 1.46906 * 109.50561 * 299.23687 * 13 12 11 16 16 C 1.53118 * 109.27919 * 59.17926 * 13 12 11 17 17 C 1.53121 * 109.16055 * 302.34364 * 16 13 12 18 18 C 1.46850 * 110.99772 * 305.42914 * 11 10 9 19 19 H 1.08997 * 109.45984 * 65.83535 * 18 11 10 20 20 C 1.53004 * 109.46369 * 305.85888 * 18 11 10 21 21 F 1.39897 * 109.47248 * 65.97148 * 20 18 11 22 22 F 1.39898 * 109.46873 * 185.97937 * 20 18 11 23 23 F 1.39901 * 109.46566 * 305.97625 * 20 18 11 24 24 H 0.96995 * 120.00287 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46858 * 60.00103 * 9 7 2 26 26 H 1.08992 * 109.46967 * 300.00164 * 9 7 2 27 27 H 1.09002 * 109.47176 * 59.99754 * 10 9 7 28 28 H 1.09005 * 109.47289 * 300.00130 * 10 9 7 29 29 H 1.08996 * 109.46119 * 294.17672 * 12 11 10 30 30 H 1.09000 * 109.46038 * 54.15653 * 12 11 10 31 31 H 1.00897 * 111.00122 * 179.97438 * 15 13 12 32 32 H 1.00898 * 110.99976 * 303.95868 * 15 13 12 33 33 H 1.08993 * 109.52243 * 62.25360 * 16 13 12 34 34 H 1.09007 * 109.52209 * 182.43912 * 16 13 12 35 35 H 1.08998 * 109.50283 * 297.71033 * 17 16 13 36 36 H 1.08997 * 109.50296 * 177.59607 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 0.8349 -5.1512 -1.2867 13 6 0.2037 -6.5452 -1.3038 14 1 -0.3110 -6.7000 -2.2520 15 7 1.2529 -7.5608 -1.1431 16 6 -0.7995 -6.6601 -0.1528 17 6 -0.0805 -6.3822 1.1702 18 6 0.5590 -4.9929 1.1156 19 1 -0.2172 -4.2414 0.9711 20 6 1.2957 -4.7189 2.4283 21 9 1.7631 -3.4003 2.4343 22 9 0.4201 -4.9084 3.5028 23 9 2.3777 -5.5976 2.5479 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8719 -3.6044 0.8894 28 1 2.8719 -3.6044 -0.8905 29 1 0.0576 -4.3989 -1.4198 30 1 1.5603 -5.0711 -2.0963 31 1 0.8607 -8.4904 -1.1508 32 1 1.9636 -7.4619 -1.8525 33 1 -1.5991 -5.9327 -0.2926 34 1 -1.2197 -7.6657 -0.1348 35 1 0.6935 -7.1332 1.3284 36 1 -0.7983 -6.4205 1.9895 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393923728.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:48 Heat of formation + Delta-G solvation = -149.736250 kcal Electronic energy + Delta-G solvation = -22370.324370 eV Core-core repulsion = 18667.156467 eV Total energy + Delta-G solvation = -3703.167903 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.54296 -47.07310 -46.89864 -39.16487 -35.05211 -33.02150 -32.16497 -29.20966 -28.98526 -25.78348 -24.48960 -23.04676 -22.05178 -20.56883 -18.95561 -17.90574 -17.60088 -16.80796 -16.43536 -15.58375 -15.32522 -14.88439 -14.51222 -14.34812 -14.04241 -13.66464 -13.46962 -13.36515 -13.27887 -13.06450 -12.81448 -12.66762 -12.17082 -12.02998 -11.85768 -11.52342 -11.23328 -10.90417 -10.83597 -10.64700 -10.40891 -10.17781 -9.91891 -9.65601 -9.13606 -8.43956 -8.33838 -7.61726 -6.00920 -4.02230 3.29405 3.31880 3.38333 3.42632 4.09514 4.33637 4.46655 4.55269 4.67000 4.86572 4.96952 5.07360 5.27109 5.35431 5.39742 5.59556 5.75406 5.83109 5.91284 5.96730 6.07467 6.09375 6.26155 6.45620 6.63158 6.87060 7.18880 7.35897 7.43033 7.58794 7.64032 7.76384 7.98172 8.42141 9.03237 9.61385 11.10547 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.007084 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.703336 B = 3951.489374 C = 4558.148612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.055 0.945 9 C -0.009 4.009 10 C 0.033 3.967 11 N -0.509 5.509 12 C 0.065 3.935 13 C 0.092 3.908 14 H 0.036 0.964 15 N -0.827 5.827 16 C -0.109 4.109 17 C -0.106 4.106 18 C 0.045 3.955 19 H 0.086 0.914 20 C 0.454 3.546 21 F -0.160 7.160 22 F -0.192 7.192 23 F -0.179 7.179 24 H 0.260 0.740 25 H 0.012 0.988 26 H 0.024 0.976 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.331 0.669 32 H 0.340 0.660 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.235 -14.608 -0.491 14.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.074 0.926 9 C -0.047 4.047 10 C -0.093 4.093 11 N -0.233 5.233 12 C -0.064 4.064 13 C -0.020 4.020 14 H 0.054 0.946 15 N -0.357 5.357 16 C -0.147 4.147 17 C -0.144 4.144 18 C -0.066 4.066 19 H 0.104 0.896 20 C 0.400 3.600 21 F -0.141 7.141 22 F -0.174 7.174 23 F -0.160 7.160 24 H 0.069 0.931 25 H 0.030 0.970 26 H 0.042 0.958 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.143 0.857 32 H 0.153 0.847 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.886 -14.511 0.310 14.542 hybrid contribution -0.356 1.515 -0.891 1.793 sum -1.242 -12.996 -0.581 13.068 Atomic orbital electron populations 1.69948 1.06053 1.26551 1.51055 1.24992 0.94826 0.99220 0.95309 0.86604 0.79965 0.83502 0.78014 1.20753 1.21262 1.19803 1.21081 0.92976 0.90715 1.50268 0.92639 1.19741 0.94896 0.92862 0.97162 1.22830 0.97551 0.86460 1.02466 1.62254 1.24836 1.35452 1.00784 1.22077 0.97928 0.94620 0.91750 1.21417 0.91840 0.92671 0.96032 0.94638 1.58506 1.14864 1.05330 1.57004 1.21543 0.97089 1.01542 0.94490 1.21515 1.00068 0.95250 0.97576 1.22642 0.94849 1.00364 0.88728 0.89605 1.20496 0.77987 0.74842 0.86693 1.93293 1.88834 1.35583 1.96434 1.93116 1.69633 1.95130 1.59521 1.93150 1.57035 1.69296 1.96527 0.93079 0.96956 0.95779 0.90410 0.91594 0.93254 0.90574 0.85713 0.84673 0.91510 0.91672 0.89051 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.43 9.11 -34.43 -0.31 -14.75 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C -0.01 -0.22 3.62 -27.88 -0.10 -0.32 16 10 C 0.03 0.70 4.67 -3.83 -0.02 0.68 16 11 N -0.51 -8.96 4.37 -226.69 -0.99 -9.95 16 12 C 0.06 1.00 4.72 -3.83 -0.02 0.98 16 13 C 0.09 1.11 3.60 -67.63 -0.24 0.87 16 14 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 15 N -0.83 -9.06 8.46 -4.60 -0.04 -9.10 16 16 C -0.11 -1.29 5.67 -26.61 -0.15 -1.44 16 17 C -0.11 -1.47 4.94 -26.65 -0.13 -1.60 16 18 C 0.04 0.77 1.46 -67.72 -0.10 0.67 16 19 H 0.09 1.64 6.58 -51.93 -0.34 1.29 16 20 C 0.45 8.40 2.42 37.16 0.09 8.49 16 21 F -0.16 -3.49 12.24 2.25 0.03 -3.46 16 22 F -0.19 -3.36 16.58 2.25 0.04 -3.33 16 23 F -0.18 -3.26 16.82 2.25 0.04 -3.22 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.01 0.33 6.80 -51.93 -0.35 -0.03 16 26 H 0.02 0.65 5.08 -51.93 -0.26 0.38 16 27 H 0.08 1.71 5.81 -51.93 -0.30 1.41 16 28 H 0.07 1.36 7.99 -51.93 -0.42 0.95 16 29 H 0.05 0.85 6.86 -51.93 -0.36 0.49 16 30 H 0.08 1.14 8.02 -51.93 -0.42 0.72 16 31 H 0.33 2.92 9.04 -39.29 -0.36 2.57 16 32 H 0.34 3.48 8.99 -39.29 -0.35 3.12 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.32 7.53 -51.93 -0.39 0.93 16 36 H 0.07 0.87 7.69 -51.93 -0.40 0.47 16 LS Contribution 289.15 15.07 4.36 4.36 Total: -1.00 -30.24 289.15 -6.69 -36.94 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -4.76 Total: 1.84 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -1.08 Total: -4.85 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.29 Total: -45.13 kcal Atomic # 9 Polarization: -10.11 SS G_CDS: 0.10 Total: -10.01 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.24 -6.69 -36.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393923728.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.800 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds