Wall clock time and date at job start Mon Mar 30 2020 04:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00242 * 2 1 4 4 H 1.48500 * 109.47248 * 270.00642 * 3 2 1 5 5 H 1.48509 * 109.47159 * 30.00278 * 3 2 1 6 6 H 1.48494 * 109.47484 * 150.00211 * 3 2 1 7 7 C 1.37882 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00367 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99720 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46952 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47033 * 180.02562 * 10 9 7 12 12 C 1.46846 * 111.00160 * 69.63991 * 11 10 9 13 13 C 1.53037 * 109.52175 * 174.16212 * 12 11 10 14 14 H 1.08996 * 109.50638 * 179.12372 * 13 12 11 15 15 N 1.46906 * 109.50561 * 299.23687 * 13 12 11 16 16 C 1.53118 * 109.27919 * 59.17926 * 13 12 11 17 17 C 1.53121 * 109.16055 * 302.34364 * 16 13 12 18 18 C 1.46850 * 110.99772 * 305.42914 * 11 10 9 19 19 H 1.08997 * 109.45984 * 65.83535 * 18 11 10 20 20 C 1.53004 * 109.46369 * 305.85888 * 18 11 10 21 21 F 1.39897 * 109.47248 * 65.97148 * 20 18 11 22 22 F 1.39898 * 109.46873 * 185.97937 * 20 18 11 23 23 F 1.39901 * 109.46566 * 305.97625 * 20 18 11 24 24 H 0.96995 * 120.00287 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46858 * 60.00103 * 9 7 2 26 26 H 1.08992 * 109.46967 * 300.00164 * 9 7 2 27 27 H 1.09002 * 109.47176 * 59.99754 * 10 9 7 28 28 H 1.09005 * 109.47289 * 300.00130 * 10 9 7 29 29 H 1.08996 * 109.46119 * 294.17672 * 12 11 10 30 30 H 1.09000 * 109.46038 * 54.15653 * 12 11 10 31 31 H 1.00897 * 111.00122 * 179.97438 * 15 13 12 32 32 H 1.00898 * 110.99976 * 303.95868 * 15 13 12 33 33 H 1.08993 * 109.52243 * 62.25360 * 16 13 12 34 34 H 1.09007 * 109.52209 * 182.43912 * 16 13 12 35 35 H 1.08998 * 109.50283 * 297.71033 * 17 16 13 36 36 H 1.08997 * 109.50296 * 177.59607 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 0.8349 -5.1512 -1.2867 13 6 0.2037 -6.5452 -1.3038 14 1 -0.3110 -6.7000 -2.2520 15 7 1.2529 -7.5608 -1.1431 16 6 -0.7995 -6.6601 -0.1528 17 6 -0.0805 -6.3822 1.1702 18 6 0.5590 -4.9929 1.1156 19 1 -0.2172 -4.2414 0.9711 20 6 1.2957 -4.7189 2.4283 21 9 1.7631 -3.4003 2.4343 22 9 0.4201 -4.9084 3.5028 23 9 2.3777 -5.5976 2.5479 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8719 -3.6044 0.8894 28 1 2.8719 -3.6044 -0.8905 29 1 0.0576 -4.3989 -1.4198 30 1 1.5603 -5.0711 -2.0963 31 1 0.8607 -8.4904 -1.1508 32 1 1.9636 -7.4619 -1.8525 33 1 -1.5991 -5.9327 -0.2926 34 1 -1.2197 -7.6657 -0.1348 35 1 0.6935 -7.1332 1.3284 36 1 -0.7983 -6.4205 1.9895 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393923728.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:48 Heat of formation + Delta-G solvation = -171.381455 kcal Electronic energy + Delta-G solvation = -22371.262977 eV Core-core repulsion = 18667.156467 eV Total energy + Delta-G solvation = -3704.106510 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.07394 -48.61391 -48.43186 -40.46096 -36.45140 -34.84287 -33.59971 -30.92820 -30.18864 -27.37389 -26.04048 -24.64125 -23.51010 -22.08976 -20.28856 -19.37047 -19.09256 -18.56148 -18.24097 -16.64433 -16.58993 -16.49460 -16.22019 -15.88089 -15.44247 -15.07588 -14.91478 -14.82902 -14.80041 -14.60585 -14.24209 -14.17925 -13.88878 -13.53807 -13.11347 -13.02468 -12.88983 -12.73067 -12.58420 -11.98986 -11.88365 -11.75619 -11.44145 -11.39604 -11.16388 -10.52829 -9.30389 -9.17540 -8.20449 -6.29908 1.37408 1.38750 1.49767 1.82745 2.39148 2.66307 2.89487 3.12629 3.14939 3.46439 3.73765 3.83138 3.95485 4.11336 4.15643 4.34800 4.41264 4.62274 4.67891 4.82033 4.85572 4.94388 4.97761 5.00630 5.11895 5.38766 5.47365 5.55181 5.71206 5.93948 6.02985 6.30641 6.48037 6.84990 6.86650 7.37975 8.90581 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.007084 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.703336 B = 3951.489374 C = 4558.148612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.533 4.533 8 H 0.055 0.945 9 C 0.006 3.994 10 C 0.048 3.952 11 N -0.500 5.500 12 C 0.060 3.940 13 C 0.101 3.899 14 H 0.057 0.943 15 N -0.834 5.834 16 C -0.107 4.107 17 C -0.099 4.099 18 C 0.046 3.954 19 H 0.062 0.938 20 C 0.452 3.548 21 F -0.184 7.184 22 F -0.186 7.186 23 F -0.175 7.175 24 H 0.262 0.738 25 H -0.009 1.009 26 H 0.003 0.997 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.026 0.974 30 H 0.080 0.920 31 H 0.347 0.653 32 H 0.345 0.655 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.003 -15.865 -0.943 15.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.572 4.572 8 H 0.074 0.926 9 C -0.033 4.033 10 C -0.079 4.079 11 N -0.223 5.223 12 C -0.068 4.068 13 C -0.011 4.011 14 H 0.075 0.925 15 N -0.366 5.366 16 C -0.145 4.145 17 C -0.137 4.137 18 C -0.065 4.065 19 H 0.080 0.920 20 C 0.397 3.603 21 F -0.166 7.166 22 F -0.168 7.168 23 F -0.157 7.157 24 H 0.071 0.929 25 H 0.009 0.991 26 H 0.021 0.979 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.099 0.901 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.652 -15.801 -0.149 15.815 hybrid contribution -0.440 1.871 -0.728 2.055 sum -1.092 -13.930 -0.877 14.000 Atomic orbital electron populations 1.70071 1.07590 1.27557 1.51903 1.25872 0.95720 1.03007 0.94860 0.85540 0.78705 0.78893 0.78498 1.19615 1.20852 1.19104 1.21520 0.93304 0.92278 1.50107 0.92629 1.19551 0.94965 0.93769 0.94978 1.22522 0.96727 0.86676 1.01994 1.62311 1.25338 1.32617 1.02062 1.22216 0.97386 0.96607 0.90581 1.21296 0.91939 0.90615 0.97236 0.92486 1.58433 1.14780 1.05982 1.57436 1.21588 0.96712 1.03234 0.92990 1.21538 1.00233 0.92446 0.99446 1.22734 0.93907 1.02069 0.87758 0.91985 1.20727 0.78169 0.73859 0.87522 1.93244 1.89203 1.37518 1.96591 1.93121 1.69320 1.94989 1.59334 1.93149 1.57003 1.68951 1.96569 0.92920 0.99108 0.97861 0.91450 0.91300 0.95615 0.90129 0.83893 0.84110 0.91903 0.88535 0.88986 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.53 -30.69 9.11 25.60 0.23 -30.45 16 8 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 9 C 0.01 0.29 3.62 29.85 0.11 0.40 16 10 C 0.05 2.06 4.67 86.30 0.40 2.47 16 11 N -0.50 -17.50 4.37 -871.11 -3.81 -21.31 16 12 C 0.06 1.82 4.72 86.33 0.41 2.23 16 13 C 0.10 2.19 3.60 44.97 0.16 2.35 16 14 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 15 N -0.83 -15.81 8.46 -168.46 -1.43 -17.24 16 16 C -0.11 -2.26 5.67 30.67 0.17 -2.08 16 17 C -0.10 -2.55 4.94 30.65 0.15 -2.40 16 18 C 0.05 1.58 1.46 44.94 0.07 1.65 16 19 H 0.06 2.45 6.58 -2.39 -0.02 2.44 16 20 C 0.45 16.76 2.42 71.98 0.17 16.93 16 21 F -0.18 -8.25 12.24 44.97 0.55 -7.70 16 22 F -0.19 -6.45 16.58 44.97 0.75 -5.70 16 23 F -0.18 -6.28 16.82 44.97 0.76 -5.53 16 24 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 25 H -0.01 -0.52 6.80 -2.39 -0.02 -0.54 16 26 H 0.00 0.18 5.08 -2.39 -0.01 0.17 16 27 H 0.07 3.03 5.81 -2.39 -0.01 3.01 16 28 H 0.07 2.87 7.99 -2.38 -0.02 2.85 16 29 H 0.03 0.90 6.86 -2.39 -0.02 0.89 16 30 H 0.08 2.34 8.02 -2.39 -0.02 2.32 16 31 H 0.35 4.85 9.04 -89.70 -0.81 4.04 16 32 H 0.35 6.12 8.99 -89.70 -0.81 5.32 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 34 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.09 2.41 7.53 -2.39 -0.02 2.39 16 36 H 0.08 1.88 7.69 -2.39 -0.02 1.86 16 Total: -1.00 -65.33 289.15 0.98 -64.35 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -0.50 Total: 10.72 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 2.34 Total: -8.26 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -4.95 Total: -95.01 kcal Atomic # 9 Polarization: -20.98 SS G_CDS: 2.05 Total: -18.93 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -65.33 0.98 -64.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393923728.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.027 kcal (2) G-P(sol) polarization free energy of solvation -65.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds