Wall clock time and date at job start Mon Mar 30 2020 04:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48501 * 109.47204 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46883 * 300.00530 * 3 2 1 6 6 H 1.48497 * 109.47119 * 60.00411 * 3 2 1 7 7 C 1.37887 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99693 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47227 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47037 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47037 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47463 * 179.97438 * 12 11 10 14 14 C 1.50237 * 111.00363 * 169.99609 * 13 12 11 15 15 C 1.50991 * 102.40421 * 147.28114 * 14 13 12 16 16 H 1.09002 * 110.53401 * 71.10311 * 15 14 13 17 17 C 1.47990 * 126.50329 * 209.11706 * 15 14 13 18 18 O 1.21229 * 127.35079 * 321.60620 * 17 15 14 19 19 N 1.37029 * 105.30360 * 141.58145 * 17 15 14 20 20 C 1.37248 * 112.56189 * 344.59071 * 19 17 15 21 21 O 1.21224 * 127.56662 * 165.19910 * 20 19 17 22 22 C 1.46230 * 104.78555 * 345.06853 * 20 19 17 23 23 H 1.08997 * 107.02708 * 287.50555 * 22 20 19 24 24 C 1.48527 * 133.50466 * 151.36839 * 22 20 19 25 25 H 0.96999 * 119.99800 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47378 * 60.00261 * 9 7 2 27 27 H 1.09002 * 109.47103 * 300.00591 * 9 7 2 28 28 H 1.08997 * 109.47029 * 59.99992 * 10 9 7 29 29 H 1.08997 * 109.46529 * 299.99761 * 10 9 7 30 30 H 1.08997 * 109.47391 * 60.00000 * 11 10 9 31 31 H 1.09007 * 109.47311 * 299.99731 * 11 10 9 32 32 H 1.08997 * 109.47029 * 59.99779 * 12 11 10 33 33 H 1.09007 * 109.46850 * 300.00013 * 12 11 10 34 34 H 1.09003 * 110.81638 * 29.05511 * 14 13 12 35 35 H 1.08994 * 110.82054 * 265.51208 * 14 13 12 36 36 H 0.97001 * 123.71575 * 164.31527 * 19 17 15 37 37 H 1.09004 * 110.41160 * 91.84136 * 24 22 20 38 38 H 1.08997 * 110.41161 * 329.39675 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1501 -0.0018 13 7 1.7400 -7.4223 -0.0018 14 6 2.6669 -8.5791 -0.2461 15 6 2.0289 -9.6824 0.5635 16 1 1.1020 -10.0135 0.0950 17 6 2.7250 -10.8227 1.2000 18 8 3.6574 -11.4567 0.7546 19 7 2.0913 -11.0089 2.4006 20 6 1.3126 -9.9363 2.7569 21 8 0.4556 -9.8973 3.6134 22 6 1.7469 -8.8514 1.8778 23 1 2.7311 -8.5353 2.2234 24 6 1.0680 -7.6548 1.3183 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5568 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8719 -3.6044 0.8894 29 1 2.8718 -3.6044 -0.8905 30 1 0.8539 -5.0446 -0.8914 31 1 0.8532 -5.0451 0.8886 32 1 3.1011 -6.0928 0.8881 33 1 3.1011 -6.0919 -0.8919 34 1 3.6684 -8.3576 0.1226 35 1 2.6911 -8.8394 -1.3042 36 1 2.1800 -11.8119 2.9375 37 1 1.2103 -6.7956 1.9740 38 1 0.0058 -7.8527 1.1748 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395733963.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:11 Heat of formation + Delta-G solvation = -44.420510 kcal Electronic energy + Delta-G solvation = -19665.202951 eV Core-core repulsion = 16508.458621 eV Total energy + Delta-G solvation = -3156.744330 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.79863 -39.02296 -38.80031 -36.17539 -34.82470 -32.83804 -31.18715 -29.88285 -28.15235 -25.37639 -25.08478 -23.02041 -21.76973 -20.78492 -20.00390 -19.65093 -18.38936 -18.10215 -16.27404 -16.21635 -16.12400 -15.84250 -15.14753 -15.02079 -14.50107 -14.27311 -14.09476 -13.53985 -13.37024 -12.64680 -12.51157 -12.31481 -12.02101 -11.69840 -11.38452 -11.36796 -11.01500 -10.86285 -10.74775 -10.62795 -10.54818 -10.45658 -10.42433 -9.65025 -9.28244 -9.01024 -8.65396 -8.33404 -5.98354 -4.00545 0.99854 1.92531 2.16102 2.88519 3.31534 3.38990 3.42010 3.43557 3.66472 4.23402 4.35759 4.38724 4.47459 4.73059 4.88810 5.15873 5.18882 5.33860 5.36965 5.37832 5.52991 5.58383 5.72793 5.79743 5.88738 6.04882 6.11564 6.38182 6.57502 6.71334 6.75570 6.83009 6.95889 7.18122 7.32511 7.70662 7.85819 8.02675 8.45291 9.07268 9.63490 11.12972 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.040231 B = 0.003005 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.811795 B = 9314.603130 C = 9680.195057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.110 4.110 11 C -0.113 4.113 12 C 0.046 3.954 13 N -0.514 5.514 14 C 0.064 3.936 15 C -0.153 4.153 16 H 0.138 0.862 17 C 0.560 3.440 18 O -0.465 6.465 19 N -0.711 5.711 20 C 0.571 3.429 21 O -0.460 6.460 22 C -0.175 4.175 23 H 0.110 0.890 24 C 0.069 3.931 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.415 0.585 37 H 0.085 0.915 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.170 -22.147 2.524 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.148 4.148 11 C -0.151 4.151 12 C -0.082 4.082 13 N -0.239 5.239 14 C -0.064 4.064 15 C -0.175 4.175 16 H 0.156 0.844 17 C 0.348 3.652 18 O -0.333 6.333 19 N -0.381 5.381 20 C 0.359 3.641 21 O -0.328 6.328 22 C -0.197 4.197 23 H 0.128 0.872 24 C -0.059 4.059 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.255 0.745 37 H 0.104 0.896 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.691 -22.148 2.234 22.564 hybrid contribution 1.136 0.456 1.020 1.594 sum 4.827 -21.692 3.255 22.459 Atomic orbital electron populations 1.69974 1.06038 1.26429 1.51042 1.25036 0.94840 0.99239 0.95426 0.86565 0.80114 0.83922 0.77568 1.19778 1.21024 1.21052 1.21322 0.93035 0.91212 1.50283 0.92742 1.19090 0.94010 0.91303 0.97209 1.21606 0.99126 0.93972 1.00092 1.21666 0.97747 0.93300 1.02385 1.22507 0.96241 0.88459 1.00987 1.65598 1.28072 1.01945 1.28244 1.22349 0.94938 0.87991 1.01089 1.22774 1.03206 0.94452 0.97023 0.84425 1.20030 0.80862 0.84072 0.80282 1.90817 1.24165 1.51179 1.67173 1.46426 1.46157 1.21451 1.24079 1.19322 0.78756 0.83778 0.82280 1.90830 1.27289 1.82924 1.31768 1.22152 1.04826 0.97286 0.95471 0.87189 1.21750 1.00051 0.94218 0.89833 0.93089 0.96561 0.96706 0.93689 0.93404 0.91425 0.92422 0.94553 0.90343 0.92010 0.88035 0.74498 0.89646 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.15 5.15 -26.73 -0.14 -2.28 16 11 C -0.11 -1.76 5.26 -26.73 -0.14 -1.90 16 12 C 0.05 0.55 4.61 -3.82 -0.02 0.53 16 13 N -0.51 -5.24 5.30 -232.90 -1.24 -6.48 16 14 C 0.06 0.51 6.40 -2.96 -0.02 0.49 16 15 C -0.15 -1.09 3.24 -91.30 -0.30 -1.39 16 16 H 0.14 0.86 8.14 -51.93 -0.42 0.43 16 17 C 0.56 4.46 8.29 -11.23 -0.09 4.37 16 18 O -0.46 -5.11 18.02 5.60 0.10 -5.01 16 19 N -0.71 -4.77 5.87 -12.53 -0.07 -4.85 16 20 C 0.57 4.88 8.36 -11.92 -0.10 4.78 16 21 O -0.46 -5.46 18.02 5.61 0.10 -5.36 16 22 C -0.17 -1.38 2.92 -93.26 -0.27 -1.65 16 23 H 0.11 0.81 7.75 -51.93 -0.40 0.41 16 24 C 0.07 0.64 6.15 -4.30 -0.03 0.62 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.90 7.03 -51.93 -0.36 0.53 16 32 H 0.04 0.42 8.04 -51.93 -0.42 0.00 16 33 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 34 H 0.06 0.48 7.85 -51.93 -0.41 0.08 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.42 2.04 8.96 -40.82 -0.37 1.68 16 37 H 0.09 0.86 6.82 -51.93 -0.35 0.50 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 317.00 15.07 4.78 4.78 Total: -1.00 -32.49 317.00 -7.92 -40.41 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -5.66 Total: -4.32 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.65 Total: -9.55 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: -0.57 Total: -37.55 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.20 Total: -10.37 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.49 -7.92 -40.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395733963.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.011 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds