Wall clock time and date at job start Mon Mar 30 2020 04:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48501 * 109.47204 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46883 * 300.00530 * 3 2 1 6 6 H 1.48497 * 109.47119 * 60.00411 * 3 2 1 7 7 C 1.37887 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99693 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47227 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47037 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47037 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47463 * 179.97438 * 12 11 10 14 14 C 1.50237 * 111.00363 * 169.99609 * 13 12 11 15 15 C 1.50991 * 102.40421 * 147.28114 * 14 13 12 16 16 H 1.09002 * 110.53401 * 71.10311 * 15 14 13 17 17 C 1.47990 * 126.50329 * 209.11706 * 15 14 13 18 18 O 1.21229 * 127.35079 * 321.60620 * 17 15 14 19 19 N 1.37029 * 105.30360 * 141.58145 * 17 15 14 20 20 C 1.37248 * 112.56189 * 344.59071 * 19 17 15 21 21 O 1.21224 * 127.56662 * 165.19910 * 20 19 17 22 22 C 1.46230 * 104.78555 * 345.06853 * 20 19 17 23 23 H 1.08997 * 107.02708 * 287.50555 * 22 20 19 24 24 C 1.48527 * 133.50466 * 151.36839 * 22 20 19 25 25 H 0.96999 * 119.99800 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47378 * 60.00261 * 9 7 2 27 27 H 1.09002 * 109.47103 * 300.00591 * 9 7 2 28 28 H 1.08997 * 109.47029 * 59.99992 * 10 9 7 29 29 H 1.08997 * 109.46529 * 299.99761 * 10 9 7 30 30 H 1.08997 * 109.47391 * 60.00000 * 11 10 9 31 31 H 1.09007 * 109.47311 * 299.99731 * 11 10 9 32 32 H 1.08997 * 109.47029 * 59.99779 * 12 11 10 33 33 H 1.09007 * 109.46850 * 300.00013 * 12 11 10 34 34 H 1.09003 * 110.81638 * 29.05511 * 14 13 12 35 35 H 1.08994 * 110.82054 * 265.51208 * 14 13 12 36 36 H 0.97001 * 123.71575 * 164.31527 * 19 17 15 37 37 H 1.09004 * 110.41160 * 91.84136 * 24 22 20 38 38 H 1.08997 * 110.41161 * 329.39675 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1501 -0.0018 13 7 1.7400 -7.4223 -0.0018 14 6 2.6669 -8.5791 -0.2461 15 6 2.0289 -9.6824 0.5635 16 1 1.1020 -10.0135 0.0950 17 6 2.7250 -10.8227 1.2000 18 8 3.6574 -11.4567 0.7546 19 7 2.0913 -11.0089 2.4006 20 6 1.3126 -9.9363 2.7569 21 8 0.4556 -9.8973 3.6134 22 6 1.7469 -8.8514 1.8778 23 1 2.7311 -8.5353 2.2234 24 6 1.0680 -7.6548 1.3183 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5568 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8719 -3.6044 0.8894 29 1 2.8718 -3.6044 -0.8905 30 1 0.8539 -5.0446 -0.8914 31 1 0.8532 -5.0451 0.8886 32 1 3.1011 -6.0928 0.8881 33 1 3.1011 -6.0919 -0.8919 34 1 3.6684 -8.3576 0.1226 35 1 2.6911 -8.8394 -1.3042 36 1 2.1800 -11.8119 2.9375 37 1 1.2103 -6.7956 1.9740 38 1 0.0058 -7.8527 1.1748 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395733963.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:10 Heat of formation + Delta-G solvation = -68.822816 kcal Electronic energy + Delta-G solvation = -19666.261114 eV Core-core repulsion = 16508.458621 eV Total energy + Delta-G solvation = -3157.802493 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.48366 -39.79104 -39.58967 -37.08850 -36.25406 -34.56633 -32.49171 -30.58526 -29.61621 -26.68203 -25.98835 -24.36547 -22.51003 -22.09434 -21.36563 -20.34616 -19.06919 -18.78012 -18.39645 -16.99076 -16.95818 -16.64185 -16.45673 -16.16347 -15.78459 -15.24582 -15.05868 -14.66560 -14.30691 -14.20243 -13.59221 -13.52394 -13.26670 -13.02337 -12.81294 -12.66113 -12.20847 -12.14477 -12.08595 -11.95422 -11.57408 -11.42751 -11.33309 -11.27502 -11.23967 -10.93976 -10.53194 -9.44412 -8.17645 -6.28556 0.30359 1.26672 1.41278 1.41445 1.51732 1.54757 2.23155 2.42594 2.68012 2.99594 3.15409 3.55329 3.70569 3.75344 4.07811 4.13988 4.22249 4.28704 4.49329 4.61004 4.70722 4.72245 4.82988 4.89986 4.92849 5.00067 5.09825 5.22460 5.28640 5.32543 5.43132 5.60260 5.71470 5.84343 5.91059 5.96045 6.04376 6.29342 6.69505 6.90082 7.40806 8.94298 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.040231 B = 0.003005 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.811795 B = 9314.603130 C = 9680.195057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.098 4.098 11 C -0.104 4.104 12 C 0.056 3.944 13 N -0.523 5.523 14 C 0.066 3.934 15 C -0.142 4.142 16 H 0.152 0.848 17 C 0.572 3.428 18 O -0.492 6.492 19 N -0.697 5.697 20 C 0.581 3.419 21 O -0.494 6.494 22 C -0.173 4.173 23 H 0.121 0.879 24 C 0.068 3.932 25 H 0.263 0.737 26 H -0.011 1.011 27 H -0.011 1.011 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.425 0.575 37 H 0.077 0.923 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.674 -22.754 2.377 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.136 4.136 11 C -0.142 4.142 12 C -0.072 4.072 13 N -0.247 5.247 14 C -0.061 4.061 15 C -0.164 4.164 16 H 0.169 0.831 17 C 0.360 3.640 18 O -0.363 6.363 19 N -0.368 5.368 20 C 0.370 3.630 21 O -0.365 6.365 22 C -0.195 4.195 23 H 0.138 0.862 24 C -0.059 4.059 25 H 0.072 0.928 26 H 0.008 0.992 27 H 0.007 0.993 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.267 0.733 37 H 0.095 0.905 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.210 -22.785 2.088 23.466 hybrid contribution 0.623 0.622 1.064 1.381 sum 5.834 -22.163 3.152 23.134 Atomic orbital electron populations 1.70108 1.07821 1.27619 1.51953 1.26006 0.95769 1.03415 0.94890 0.85415 0.79149 0.78853 0.77724 1.18474 1.20435 1.20474 1.21797 0.93584 0.92577 1.50079 0.92166 1.19031 0.94572 0.93318 0.94604 1.21407 0.97941 0.93715 1.00526 1.21479 0.98015 0.92958 1.01703 1.22270 0.95131 0.87919 1.01842 1.65521 1.28556 1.01918 1.28698 1.22384 0.94751 0.87106 1.01904 1.22734 1.03431 0.93788 0.96398 0.83093 1.20003 0.80129 0.83663 0.80168 1.90821 1.25440 1.52235 1.67776 1.46253 1.45222 1.21469 1.23813 1.19326 0.78015 0.84137 0.81520 1.90826 1.28907 1.83454 1.33338 1.22031 1.04912 0.96845 0.95704 0.86150 1.21698 1.00149 0.94553 0.89546 0.92850 0.99240 0.99287 0.93119 0.92915 0.92492 0.92825 0.93644 0.89564 0.91339 0.86983 0.73317 0.90457 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 3 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.54 -30.90 9.11 25.60 0.23 -30.66 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 9 C 0.02 1.15 4.97 29.85 0.15 1.30 16 10 C -0.10 -3.80 5.15 30.59 0.16 -3.64 16 11 C -0.10 -3.17 5.26 30.59 0.16 -3.01 16 12 C 0.06 1.24 4.61 86.30 0.40 1.64 16 13 N -0.52 -9.60 5.30 -890.75 -4.72 -14.32 16 14 C 0.07 0.87 6.40 84.99 0.54 1.42 16 15 C -0.14 -1.68 3.24 -11.23 -0.04 -1.72 16 16 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 17 C 0.57 7.85 8.29 86.47 0.72 8.56 16 18 O -0.49 -9.88 18.02 -2.87 -0.05 -9.93 16 19 N -0.70 -8.04 5.87 -427.62 -2.51 -10.55 16 20 C 0.58 9.05 8.36 85.92 0.72 9.77 16 21 O -0.49 -11.35 18.02 -2.86 -0.05 -11.40 16 22 C -0.17 -2.38 2.92 -12.50 -0.04 -2.42 16 23 H 0.12 1.48 7.75 -2.39 -0.02 1.46 16 24 C 0.07 1.18 6.15 84.29 0.52 1.69 16 25 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 26 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 27 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.67 7.03 -2.38 -0.02 1.65 16 32 H 0.05 0.93 8.04 -2.39 -0.02 0.91 16 33 H 0.09 1.80 8.09 -2.38 -0.02 1.78 16 34 H 0.07 0.86 7.85 -2.39 -0.02 0.84 16 35 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.43 3.42 8.96 -92.71 -0.83 2.59 16 37 H 0.08 1.48 6.82 -2.38 -0.02 1.46 16 38 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -70.13 317.00 -0.81 -70.94 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 0.23 Total: 2.79 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 3.98 Total: -16.80 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -6.95 Total: -81.87 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.10 Total: -21.33 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -70.13 -0.81 -70.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395733963.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.116 kcal (2) G-P(sol) polarization free energy of solvation -70.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds