Wall clock time and date at job start Mon Mar 30 2020 04:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00097 * 2 1 4 4 H 1.48500 * 109.47322 * 270.00028 * 3 2 1 5 5 H 1.48501 * 109.47070 * 29.99982 * 3 2 1 6 6 H 1.48504 * 109.47145 * 149.99959 * 3 2 1 7 7 C 1.37880 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00055 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99981 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47131 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.46948 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46948 * 179.97438 * 11 10 9 13 13 N 1.46907 * 109.47277 * 180.02562 * 12 11 10 14 14 C 1.50366 * 110.99550 * 309.91889 * 13 12 11 15 15 C 1.47224 * 102.07940 * 215.24752 * 14 13 12 16 16 H 1.08996 * 101.72458 * 297.65429 * 15 14 13 17 17 C 1.44105 * 140.92810 * 170.80410 * 15 14 13 18 18 O 1.21225 * 127.61415 * 18.72266 * 17 15 14 19 19 N 1.37287 * 104.77135 * 198.76389 * 17 15 14 20 20 C 1.36585 * 112.74893 * 13.07971 * 19 17 15 21 21 O 1.21227 * 127.11325 * 196.27441 * 20 19 17 22 22 C 1.50674 * 105.77656 * 16.28874 * 20 19 17 23 23 H 1.08992 * 113.30320 * 85.10750 * 22 20 19 24 24 C 1.49308 * 111.00138 * 190.00174 * 13 12 11 25 25 H 0.96997 * 120.00117 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46673 * 60.00478 * 9 7 2 27 27 H 1.08998 * 109.47161 * 300.00297 * 9 7 2 28 28 H 1.08999 * 109.47073 * 60.00023 * 10 9 7 29 29 H 1.09005 * 109.46727 * 300.00089 * 10 9 7 30 30 H 1.08999 * 109.47382 * 60.00007 * 11 10 9 31 31 H 1.08993 * 109.47550 * 299.99877 * 11 10 9 32 32 H 1.08993 * 109.47468 * 59.99894 * 12 11 10 33 33 H 1.08998 * 109.47085 * 299.99826 * 12 11 10 34 34 H 1.08999 * 110.91568 * 97.05376 * 14 13 12 35 35 H 1.09001 * 110.91159 * 333.43833 * 14 13 12 36 36 H 0.97001 * 123.62580 * 193.04147 * 19 17 15 37 37 H 1.09000 * 110.24904 * 354.01750 * 24 13 12 38 38 H 1.09001 * 110.32275 * 232.05191 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5514 -2.6367 0.0001 12 6 6.0614 -4.0792 0.0009 13 7 7.5305 -4.0793 0.0016 14 6 8.0698 -3.1789 -1.0752 15 6 9.2780 -3.9021 -1.5050 16 1 9.8741 -3.8994 -0.5926 17 6 10.2893 -3.8800 -2.5314 18 8 10.5839 -2.9571 -3.2601 19 7 10.8449 -5.1350 -2.5023 20 6 10.1073 -6.0224 -1.7716 21 8 10.4693 -7.0978 -1.3449 22 6 8.7504 -5.3886 -1.6058 23 1 8.0810 -5.5771 -2.4450 24 6 8.0656 -5.4521 -0.2398 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6798 0.8895 27 1 3.8745 -0.6809 -0.8905 28 1 3.6578 -3.1507 -0.8897 29 1 3.6584 -3.1503 0.8904 30 1 5.9148 -2.1228 0.8901 31 1 5.9148 -2.1230 -0.8898 32 1 5.6981 -4.5935 -0.8887 33 1 5.6980 -4.5925 0.8911 34 1 8.3258 -2.1994 -0.6713 35 1 7.3593 -3.0859 -1.8966 36 1 11.6721 -5.3668 -2.9528 37 1 7.2513 -6.1764 -0.2594 38 1 8.7877 -5.7181 0.5322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395733965.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:13 Heat of formation + Delta-G solvation = -34.168716 kcal Electronic energy + Delta-G solvation = -19798.076299 eV Core-core repulsion = 16641.776520 eV Total energy + Delta-G solvation = -3156.299779 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.84423 -39.05159 -38.88652 -36.22901 -34.92734 -32.81292 -31.38505 -29.99114 -28.52203 -25.57577 -25.11504 -22.94189 -21.58908 -20.96795 -20.10799 -19.59785 -18.27836 -18.13074 -16.67890 -16.26453 -16.19291 -15.89535 -15.23855 -15.00928 -14.53145 -14.19207 -13.96716 -13.73081 -13.45929 -12.80287 -12.62368 -12.58118 -11.98041 -11.79055 -11.60557 -11.40811 -11.17037 -10.88046 -10.86659 -10.67051 -10.62984 -10.56865 -9.89110 -9.70502 -9.52543 -9.16212 -8.69553 -8.52818 -6.03498 -4.01375 0.97885 1.92772 2.14696 2.84582 3.31688 3.39124 3.39919 3.43104 3.56031 4.16428 4.25642 4.42065 4.46347 4.64563 4.95730 5.06307 5.15416 5.26444 5.31018 5.34539 5.45462 5.52849 5.64685 5.69117 5.88101 5.91130 6.03342 6.22578 6.49768 6.58707 6.68286 6.70357 6.73750 6.95603 7.30917 7.32182 7.45367 7.81269 8.55135 9.01668 9.59428 11.10118 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034306 B = 0.003387 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.990356 B = 8265.491385 C = 8849.771799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.124 4.124 12 C 0.047 3.953 13 N -0.519 5.519 14 C 0.081 3.919 15 C -0.179 4.179 16 H 0.113 0.887 17 C 0.579 3.421 18 O -0.462 6.462 19 N -0.710 5.710 20 C 0.552 3.448 21 O -0.464 6.464 22 C -0.156 4.156 23 H 0.140 0.860 24 C 0.057 3.943 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.010 0.990 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.416 0.584 37 H 0.082 0.918 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.584 -11.240 -3.402 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.139 4.139 11 C -0.162 4.162 12 C -0.080 4.080 13 N -0.244 5.244 14 C -0.047 4.047 15 C -0.201 4.201 16 H 0.131 0.869 17 C 0.368 3.632 18 O -0.331 6.331 19 N -0.380 5.380 20 C 0.339 3.661 21 O -0.333 6.333 22 C -0.178 4.178 23 H 0.158 0.842 24 C -0.072 4.072 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.028 0.972 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.255 0.745 37 H 0.100 0.900 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 21.795 -10.996 -2.925 24.586 hybrid contribution 0.560 0.463 -1.050 1.277 sum 22.355 -10.533 -3.975 25.030 Atomic orbital electron populations 1.69918 1.06341 1.26867 1.51336 1.25054 0.94734 0.99242 0.94606 0.86763 0.80386 0.83565 0.78480 1.20341 1.21446 1.18942 1.21183 0.89689 0.94390 1.50618 0.91136 1.19568 0.96977 0.92413 0.96173 1.21419 0.91568 0.99915 1.01036 1.21815 0.97882 0.94187 1.02287 1.22505 0.84974 0.99235 1.01324 1.65448 1.09920 1.05589 1.43426 1.21423 0.92006 0.97297 0.93929 1.21082 0.99945 0.98026 1.01035 0.86910 1.18569 0.82037 0.80979 0.81644 1.90838 1.64723 1.36823 1.40765 1.46295 1.28138 1.12340 1.51202 1.20783 0.87279 0.82887 0.75114 1.90813 1.77378 1.19891 1.45168 1.23998 0.95702 0.94306 1.03795 0.84224 1.22704 1.00097 0.91868 0.92485 0.92778 0.96621 0.97201 0.93005 0.92700 0.91422 0.92231 0.94262 0.89958 0.87958 0.91237 0.74451 0.89993 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.99 13.96 55.43 0.77 -27.22 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -1.86 5.15 -26.73 -0.14 -2.00 16 11 C -0.12 -1.75 4.91 -26.73 -0.13 -1.88 16 12 C 0.05 0.53 4.83 -3.82 -0.02 0.51 16 13 N -0.52 -4.99 5.39 -232.88 -1.26 -6.24 16 14 C 0.08 0.72 5.05 -4.65 -0.02 0.69 16 15 C -0.18 -1.38 3.13 -94.74 -0.30 -1.67 16 16 H 0.11 0.83 7.15 -51.93 -0.37 0.46 16 17 C 0.58 4.89 8.24 -12.81 -0.11 4.79 16 18 O -0.46 -5.46 18.02 5.60 0.10 -5.36 16 19 N -0.71 -4.69 5.84 -12.39 -0.07 -4.76 16 20 C 0.55 4.31 7.99 -10.17 -0.08 4.23 16 21 O -0.46 -5.00 18.02 5.60 0.10 -4.90 16 22 C -0.16 -1.07 3.95 -89.04 -0.35 -1.43 16 23 H 0.14 0.81 8.14 -51.93 -0.42 0.38 16 24 C 0.06 0.44 6.33 -2.51 -0.02 0.42 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 27 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.81 6.50 -51.93 -0.34 0.47 16 32 H 0.04 0.42 8.07 -51.93 -0.42 0.00 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.64 7.11 -51.93 -0.37 0.27 16 36 H 0.42 2.00 8.96 -40.82 -0.37 1.64 16 37 H 0.08 0.58 7.63 -51.93 -0.40 0.19 16 38 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 LS Contribution 311.62 15.07 4.70 4.70 Total: -1.00 -32.93 311.62 -7.60 -40.53 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -5.57 Total: -3.66 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -1.70 Total: -10.10 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: -0.55 Total: -38.23 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.20 Total: -10.26 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.93 -7.60 -40.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395733965.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.362 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds