Wall clock time and date at job start Mon Mar 30 2020 04:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00097 * 2 1 4 4 H 1.48500 * 109.47322 * 270.00028 * 3 2 1 5 5 H 1.48501 * 109.47070 * 29.99982 * 3 2 1 6 6 H 1.48504 * 109.47145 * 149.99959 * 3 2 1 7 7 C 1.37880 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00055 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99981 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47131 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.46948 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46948 * 179.97438 * 11 10 9 13 13 N 1.46907 * 109.47277 * 180.02562 * 12 11 10 14 14 C 1.50366 * 110.99550 * 309.91889 * 13 12 11 15 15 C 1.47224 * 102.07940 * 215.24752 * 14 13 12 16 16 H 1.08996 * 101.72458 * 297.65429 * 15 14 13 17 17 C 1.44105 * 140.92810 * 170.80410 * 15 14 13 18 18 O 1.21225 * 127.61415 * 18.72266 * 17 15 14 19 19 N 1.37287 * 104.77135 * 198.76389 * 17 15 14 20 20 C 1.36585 * 112.74893 * 13.07971 * 19 17 15 21 21 O 1.21227 * 127.11325 * 196.27441 * 20 19 17 22 22 C 1.50674 * 105.77656 * 16.28874 * 20 19 17 23 23 H 1.08992 * 113.30320 * 85.10750 * 22 20 19 24 24 C 1.49308 * 111.00138 * 190.00174 * 13 12 11 25 25 H 0.96997 * 120.00117 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46673 * 60.00478 * 9 7 2 27 27 H 1.08998 * 109.47161 * 300.00297 * 9 7 2 28 28 H 1.08999 * 109.47073 * 60.00023 * 10 9 7 29 29 H 1.09005 * 109.46727 * 300.00089 * 10 9 7 30 30 H 1.08999 * 109.47382 * 60.00007 * 11 10 9 31 31 H 1.08993 * 109.47550 * 299.99877 * 11 10 9 32 32 H 1.08993 * 109.47468 * 59.99894 * 12 11 10 33 33 H 1.08998 * 109.47085 * 299.99826 * 12 11 10 34 34 H 1.08999 * 110.91568 * 97.05376 * 14 13 12 35 35 H 1.09001 * 110.91159 * 333.43833 * 14 13 12 36 36 H 0.97001 * 123.62580 * 193.04147 * 19 17 15 37 37 H 1.09000 * 110.24904 * 354.01750 * 24 13 12 38 38 H 1.09001 * 110.32275 * 232.05191 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5514 -2.6367 0.0001 12 6 6.0614 -4.0792 0.0009 13 7 7.5305 -4.0793 0.0016 14 6 8.0698 -3.1789 -1.0752 15 6 9.2780 -3.9021 -1.5050 16 1 9.8741 -3.8994 -0.5926 17 6 10.2893 -3.8800 -2.5314 18 8 10.5839 -2.9571 -3.2601 19 7 10.8449 -5.1350 -2.5023 20 6 10.1073 -6.0224 -1.7716 21 8 10.4693 -7.0978 -1.3449 22 6 8.7504 -5.3886 -1.6058 23 1 8.0810 -5.5771 -2.4450 24 6 8.0656 -5.4521 -0.2398 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6798 0.8895 27 1 3.8745 -0.6809 -0.8905 28 1 3.6578 -3.1507 -0.8897 29 1 3.6584 -3.1503 0.8904 30 1 5.9148 -2.1228 0.8901 31 1 5.9148 -2.1230 -0.8898 32 1 5.6981 -4.5935 -0.8887 33 1 5.6980 -4.5925 0.8911 34 1 8.3258 -2.1994 -0.6713 35 1 7.3593 -3.0859 -1.8966 36 1 11.6721 -5.3668 -2.9528 37 1 7.2513 -6.1764 -0.2594 38 1 8.7877 -5.7181 0.5322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395733965.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:13 Heat of formation + Delta-G solvation = -59.811352 kcal Electronic energy + Delta-G solvation = -19799.188247 eV Core-core repulsion = 16641.776520 eV Total energy + Delta-G solvation = -3157.411727 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.50137 -39.80117 -39.63008 -37.10821 -36.24813 -34.55172 -32.69626 -30.70008 -29.85662 -26.69251 -26.04127 -24.12610 -22.33896 -22.01491 -21.56821 -20.30774 -18.99232 -18.78666 -18.76800 -16.99999 -16.95152 -16.67931 -16.28599 -16.14857 -15.80296 -15.22836 -15.01982 -14.81137 -14.51918 -14.25099 -13.68507 -13.63391 -13.42116 -12.98888 -12.87085 -12.48291 -12.20549 -12.09629 -11.97636 -11.71795 -11.57946 -11.41247 -11.34529 -11.27593 -11.24279 -11.10032 -10.73383 -9.42292 -8.27067 -6.30764 0.30572 1.29423 1.38343 1.40323 1.52487 1.52583 2.22363 2.38940 2.68946 2.94082 3.08830 3.50596 3.63536 3.82677 4.06721 4.13372 4.20647 4.34093 4.46839 4.55656 4.70871 4.74028 4.78027 4.87205 4.91834 4.96390 5.08909 5.18401 5.24905 5.27233 5.33647 5.63557 5.67923 5.71969 5.76124 5.95130 6.04923 6.32713 6.69818 6.78435 7.34248 8.89969 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034306 B = 0.003387 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.990356 B = 8265.491385 C = 8849.771799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.533 4.533 8 H 0.030 0.970 9 C -0.014 4.014 10 C -0.095 4.095 11 C -0.113 4.113 12 C 0.055 3.945 13 N -0.525 5.525 14 C 0.078 3.922 15 C -0.176 4.176 16 H 0.120 0.880 17 C 0.590 3.410 18 O -0.497 6.497 19 N -0.697 5.697 20 C 0.562 3.438 21 O -0.492 6.492 22 C -0.145 4.145 23 H 0.157 0.843 24 C 0.057 3.943 25 H 0.265 0.735 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.425 0.575 37 H 0.091 0.909 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.705 -11.081 -3.582 26.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.168 1.168 7 C -0.571 4.571 8 H 0.049 0.951 9 C -0.051 4.051 10 C -0.133 4.133 11 C -0.151 4.151 12 C -0.073 4.073 13 N -0.249 5.249 14 C -0.049 4.049 15 C -0.198 4.198 16 H 0.137 0.863 17 C 0.379 3.621 18 O -0.369 6.369 19 N -0.367 5.367 20 C 0.350 3.650 21 O -0.363 6.363 22 C -0.167 4.167 23 H 0.174 0.826 24 C -0.070 4.070 25 H 0.074 0.926 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.267 0.733 37 H 0.110 0.890 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 23.946 -10.865 -3.106 26.478 hybrid contribution -0.155 0.328 -0.989 1.053 sum 23.791 -10.537 -4.095 26.340 Atomic orbital electron populations 1.70080 1.08405 1.28109 1.53025 1.26081 0.95628 1.03726 0.94236 0.85621 0.79552 0.78053 0.79202 1.19159 1.21211 1.16753 1.21608 0.92597 0.92958 1.49947 0.95140 1.19557 0.93422 0.95752 0.96381 1.21288 0.94805 0.96630 1.00606 1.21636 0.94339 0.96499 1.02585 1.22326 0.86077 0.97058 1.01842 1.65399 1.08749 1.06800 1.43980 1.21416 0.92391 0.97303 0.93763 1.20949 0.99655 0.98308 1.00913 0.86270 1.18586 0.81749 0.80759 0.80991 1.90833 1.65809 1.38018 1.42225 1.46143 1.28336 1.11594 1.50645 1.20827 0.87500 0.82312 0.74357 1.90815 1.77902 1.21156 1.46390 1.24015 0.95384 0.93164 1.04117 0.82556 1.22711 1.00477 0.90968 0.92877 0.92599 0.96366 0.96406 0.93343 0.93386 0.91639 0.91430 0.93421 0.89913 0.88053 0.91287 0.73340 0.89042 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.41 13.96 21.45 0.30 -60.11 16 2 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 3 Si 0.95 44.23 27.47 68.60 1.88 46.11 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.24 -10.44 6.54 99.48 0.65 -9.78 16 7 C -0.53 -30.74 9.66 25.60 0.25 -30.49 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 9 C -0.01 -0.62 4.04 29.85 0.12 -0.50 16 10 C -0.10 -3.40 5.15 30.59 0.16 -3.24 16 11 C -0.11 -2.93 4.91 30.59 0.15 -2.78 16 12 C 0.05 1.08 4.83 86.30 0.42 1.50 16 13 N -0.52 -8.67 5.39 -890.71 -4.80 -13.47 16 14 C 0.08 1.20 5.05 83.82 0.42 1.62 16 15 C -0.18 -2.29 3.13 -13.47 -0.04 -2.33 16 16 H 0.12 1.46 7.15 -2.39 -0.02 1.44 16 17 C 0.59 8.83 8.24 85.33 0.70 9.54 16 18 O -0.50 -11.11 18.02 -2.86 -0.05 -11.16 16 19 N -0.70 -7.81 5.84 -427.44 -2.50 -10.31 16 20 C 0.56 7.53 7.99 87.36 0.70 8.23 16 21 O -0.49 -9.73 18.02 -2.87 -0.05 -9.78 16 22 C -0.14 -1.60 3.95 -9.77 -0.04 -1.64 16 23 H 0.16 1.28 8.14 -2.39 -0.02 1.26 16 24 C 0.06 0.72 6.33 85.82 0.54 1.27 16 25 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 26 H 0.02 0.81 7.20 -2.38 -0.02 0.80 16 27 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 1.66 6.50 -2.39 -0.02 1.64 16 32 H 0.05 0.87 8.07 -2.39 -0.02 0.85 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.08 7.11 -2.39 -0.02 1.07 16 36 H 0.43 3.32 8.96 -92.71 -0.83 2.49 16 37 H 0.09 1.03 7.63 -2.39 -0.02 1.01 16 38 H 0.09 1.20 8.07 -2.39 -0.02 1.18 16 Total: -1.00 -71.60 311.62 -1.20 -72.79 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 0.18 Total: 4.33 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 3.84 Total: -18.41 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -7.00 Total: -83.89 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.10 Total: -20.94 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.11 kcal Total: -71.60 -1.20 -72.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395733965.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.982 kcal (2) G-P(sol) polarization free energy of solvation -71.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds