Wall clock time and date at job start Mon Mar 30 2020 04:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99692 * 2 1 4 4 H 1.48505 * 109.47076 * 270.27401 * 3 2 1 5 5 H 1.48503 * 109.47462 * 30.27511 * 3 2 1 6 6 H 1.48495 * 109.47108 * 150.27708 * 3 2 1 7 7 C 1.37870 * 120.00170 * 180.27329 * 2 1 3 8 8 H 1.08005 * 119.99947 * 359.72421 * 7 2 1 9 9 C 1.50695 * 120.00100 * 179.72489 * 7 2 1 10 10 C 1.53007 * 109.47200 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47247 * 179.97438 * 10 9 7 12 12 C 1.44255 * 110.99804 * 63.99693 * 11 10 9 13 13 C 1.53933 * 112.55127 * 217.12844 * 12 11 10 14 14 N 1.48200 * 112.77756 * 318.37961 * 13 12 11 15 15 C 1.44251 * 114.27050 * 318.13400 * 14 13 12 16 16 C 1.54251 * 108.63285 * 93.39509 * 15 14 13 17 17 C 1.46135 * 111.90682 * 281.37709 * 16 15 14 18 18 H 1.08994 * 108.94256 * 300.17234 * 17 16 15 19 19 C 1.53004 * 108.93727 * 181.56582 * 17 16 15 20 20 F 1.39899 * 109.47520 * 290.77846 * 19 17 16 21 21 F 1.39903 * 109.46985 * 50.78664 * 19 17 16 22 22 F 1.39905 * 109.46677 * 170.77827 * 19 17 16 23 23 H 0.96993 * 120.00248 * 359.72336 * 1 2 3 24 24 H 1.09005 * 109.47192 * 299.99778 * 9 7 2 25 25 H 1.08997 * 109.47450 * 60.00346 * 9 7 2 26 26 H 1.08997 * 109.46829 * 300.00218 * 10 9 7 27 27 H 1.09000 * 109.47186 * 59.99985 * 10 9 7 28 28 H 1.08994 * 108.87344 * 337.92063 * 12 11 10 29 29 H 1.09001 * 108.86862 * 96.44270 * 12 11 10 30 30 H 1.09004 * 108.82300 * 79.22648 * 13 12 11 31 31 H 1.08996 * 108.82747 * 197.52569 * 13 12 11 32 32 H 1.00902 * 110.99932 * 84.59035 * 14 13 12 33 33 H 1.08997 * 109.60793 * 213.14051 * 15 14 13 34 34 H 1.08997 * 109.60870 * 333.48354 * 15 14 13 35 35 H 1.08998 * 108.99696 * 42.00724 * 16 15 14 36 36 H 1.09008 * 108.99290 * 160.75724 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4908 2.0498 -1.4001 5 1 1.4495 2.6511 0.7059 6 1 3.5496 1.4386 0.6941 7 6 2.0046 -1.1940 -0.0057 8 1 1.4646 -2.1293 -0.0057 9 6 3.5115 -1.1939 -0.0120 10 6 4.0216 -2.6365 -0.0181 11 7 5.4906 -2.6364 -0.0249 12 6 6.0130 -2.0492 1.1847 13 6 7.2816 -1.2137 0.9353 14 7 8.2155 -1.8591 -0.0174 15 6 8.3722 -3.2799 0.1764 16 6 7.3743 -4.0156 -0.7414 17 6 6.0207 -4.0094 -0.1909 18 1 6.0314 -4.5042 0.7802 19 6 5.0984 -4.7873 -1.1318 20 9 4.9324 -4.0694 -2.3210 21 9 5.6656 -6.0344 -1.4151 22 9 3.8538 -4.9694 -0.5194 23 1 -0.4850 0.8400 0.0041 24 1 3.8712 -0.6780 -0.9023 25 1 3.8786 -0.6823 0.8777 26 1 3.6619 -3.1528 0.8719 27 1 3.6546 -3.1478 -0.9080 28 1 5.2491 -1.4075 1.6236 29 1 6.2506 -2.8462 1.8894 30 1 6.9899 -0.2416 0.5377 31 1 7.7959 -1.0631 1.8844 32 1 7.9608 -1.6501 -0.9712 33 1 9.3901 -3.5739 -0.0798 34 1 8.1697 -3.5317 1.2173 35 1 7.3631 -3.5281 -1.7163 36 1 7.7018 -5.0478 -0.8663 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396341742.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:31 Heat of formation + Delta-G solvation = -132.423925 kcal Electronic energy + Delta-G solvation = -22204.812431 eV Core-core repulsion = 18502.395247 eV Total energy + Delta-G solvation = -3702.417185 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.13967 -47.63527 -47.38391 -39.55319 -35.50749 -33.61797 -32.70016 -30.32494 -27.47157 -27.19197 -24.19685 -23.67066 -21.42749 -20.94649 -19.81647 -18.49351 -18.21912 -17.70210 -16.72706 -15.86332 -15.70083 -14.98152 -14.77431 -14.50927 -14.20803 -14.04561 -13.87644 -13.79598 -13.59031 -13.54616 -13.36442 -13.12483 -12.60223 -12.45948 -12.02885 -11.67616 -11.43405 -11.25509 -11.11381 -10.82636 -10.68203 -10.25282 -9.85290 -9.74346 -9.23799 -8.57203 -8.46859 -8.14706 -6.07564 -4.06560 2.75603 3.29543 3.36715 3.39139 3.56008 3.76539 4.08519 4.31875 4.42124 4.52858 4.80369 4.89118 4.99246 5.08238 5.25743 5.28890 5.34076 5.42720 5.63032 5.77261 5.83010 5.94898 5.97646 6.09900 6.16197 6.61907 6.83789 7.03369 7.17365 7.30768 7.41472 7.47156 7.75237 8.48760 8.96483 9.53789 11.05684 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.020401 B = 0.007464 C = 0.005876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.138713 B = 3750.652871 C = 4763.663887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.003 4.003 10 C 0.044 3.956 11 N -0.521 5.521 12 C 0.016 3.984 13 C 0.070 3.930 14 N -0.693 5.693 15 C 0.080 3.920 16 C -0.162 4.162 17 C 0.047 3.953 18 H 0.079 0.921 19 C 0.450 3.550 20 F -0.168 7.168 21 F -0.187 7.187 22 F -0.175 7.175 23 H 0.264 0.736 24 H 0.021 0.979 25 H 0.017 0.983 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.350 0.650 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.625 -8.038 0.545 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.041 4.041 10 C -0.081 4.081 11 N -0.246 5.246 12 C -0.115 4.115 13 C -0.060 4.060 14 N -0.323 5.323 15 C -0.050 4.050 16 C -0.201 4.201 17 C -0.062 4.062 18 H 0.097 0.903 19 C 0.395 3.605 20 F -0.150 7.150 21 F -0.168 7.168 22 F -0.156 7.156 23 H 0.073 0.927 24 H 0.040 0.960 25 H 0.035 0.965 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.170 0.830 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 17.117 -7.514 0.514 18.701 hybrid contribution -1.129 -0.138 0.157 1.148 sum 15.988 -7.652 0.670 17.738 Atomic orbital electron populations 1.69912 1.06309 1.26963 1.50822 1.24988 0.94722 0.99133 0.94421 0.86750 0.80236 0.83495 0.78619 1.20190 1.21438 1.19012 1.21021 0.89145 0.94631 1.51298 0.91033 1.19598 0.96773 0.90943 0.96769 1.22914 0.82059 1.01792 1.01366 1.61914 1.10915 1.13476 1.38303 1.22633 0.99179 0.99295 0.90345 1.22418 0.89591 0.97473 0.96504 1.59451 1.51816 1.11554 1.09482 1.21594 0.97517 0.87374 0.98534 1.21512 0.93390 1.03316 1.01930 1.21871 0.94664 0.92013 0.97677 0.90343 1.20630 0.80519 0.77871 0.81477 1.93205 1.95600 1.77458 1.48705 1.93145 1.84787 1.44613 1.94293 1.93223 1.44502 1.95276 1.82630 0.92659 0.96031 0.96501 0.94442 0.89821 0.88930 0.94556 0.90747 0.91157 0.83013 0.90422 0.91624 0.89709 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.52 -14.88 9.66 -34.44 -0.33 -15.22 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C 0.00 -0.08 3.97 -27.88 -0.11 -0.19 16 10 C 0.04 0.88 3.28 -3.82 -0.01 0.87 16 11 N -0.52 -8.25 4.22 -231.16 -0.98 -9.23 16 12 C 0.02 0.22 4.87 -4.75 -0.02 0.20 16 13 C 0.07 0.87 6.78 -2.62 -0.02 0.85 16 14 N -0.69 -7.94 6.59 -113.46 -0.75 -8.69 16 15 C 0.08 0.80 6.26 -4.59 -0.03 0.77 16 16 C -0.16 -1.73 4.60 -29.34 -0.13 -1.87 16 17 C 0.05 0.63 1.77 -70.30 -0.12 0.50 16 18 H 0.08 0.96 7.38 -51.93 -0.38 0.58 16 19 C 0.45 6.72 2.35 37.16 0.09 6.81 16 20 F -0.17 -2.80 15.56 2.25 0.04 -2.77 16 21 F -0.19 -2.52 16.26 2.25 0.04 -2.48 16 22 F -0.18 -2.99 13.92 2.25 0.03 -2.96 16 23 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 25 H 0.02 0.39 5.27 -51.93 -0.27 0.12 16 26 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 27 H 0.08 1.76 4.53 -51.93 -0.24 1.53 16 28 H 0.09 1.50 5.60 -51.93 -0.29 1.21 16 29 H 0.04 0.47 6.54 -51.93 -0.34 0.13 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.35 4.17 8.08 -39.29 -0.32 3.85 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.65 6.97 -51.93 -0.36 0.28 16 35 H 0.08 0.97 7.38 -51.93 -0.38 0.59 16 36 H 0.08 0.76 7.33 -51.92 -0.38 0.38 16 LS Contribution 282.87 15.07 4.26 4.26 Total: -1.00 -30.02 282.87 -6.66 -36.68 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.62 Total: 0.63 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -0.80 Total: -5.37 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.95 Total: -44.95 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 0.10 Total: -8.22 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.02 -6.66 -36.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396341742.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.744 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds