Wall clock time and date at job start Mon Mar 30 2020 04:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46653 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00049 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99541 * 180.02562 * 11 10 9 14 14 C 1.46462 * 118.95018 * 359.73683 * 13 11 10 15 15 C 1.51742 * 108.41190 * 227.99539 * 14 13 11 16 16 C 1.52313 * 108.99726 * 301.32347 * 15 14 13 17 17 C 1.51713 * 112.46926 * 60.66786 * 16 15 14 18 18 H 1.09002 * 110.44048 * 78.93044 * 17 16 15 19 19 C 1.51001 * 108.80758 * 198.94965 * 17 16 15 20 20 O 1.21278 * 125.43492 * 282.95459 * 19 17 16 21 21 N 1.34591 * 109.42302 * 102.35044 * 19 17 16 22 22 C 1.47026 * 111.19106 * 1.42939 * 21 19 17 23 23 C 1.44504 * 118.94238 * 179.97438 * 13 11 10 24 24 H 1.08999 * 109.57150 * 22.73726 * 23 13 11 25 25 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 27 27 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 28 28 H 1.08996 * 109.47332 * 299.99701 * 10 9 7 29 29 H 1.08996 * 109.46646 * 60.00565 * 10 9 7 30 30 H 1.09002 * 109.84450 * 348.61425 * 14 13 11 31 31 H 1.08994 * 109.85209 * 109.60064 * 14 13 11 32 32 H 1.09005 * 109.83222 * 181.21604 * 15 14 13 33 33 H 1.09009 * 109.15546 * 61.01975 * 15 14 13 34 34 H 1.09006 * 108.87977 * 299.90465 * 16 15 14 35 35 H 1.08995 * 108.80582 * 181.38970 * 16 15 14 36 36 H 0.96999 * 124.40393 * 181.43105 * 21 19 17 37 37 H 1.08993 * 110.37274 * 258.23020 * 22 21 19 38 38 H 1.08992 * 110.46490 * 135.94053 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5286 -2.6364 -0.0001 12 8 6.1350 -1.5861 0.0004 13 7 6.2025 -3.8036 -0.0008 14 6 5.4471 -5.0584 0.0045 15 6 6.0296 -5.9640 1.0736 16 6 7.5025 -6.2057 0.7702 17 6 8.3112 -4.9221 0.7631 18 1 8.5358 -4.6080 1.7824 19 6 9.6024 -5.1643 0.0185 20 8 10.5685 -5.7505 0.4586 21 7 9.5114 -4.6395 -1.2175 22 6 8.2127 -3.9811 -1.4212 23 6 7.6473 -3.7770 -0.0014 24 1 7.9951 -2.8233 0.3957 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6796 -0.8894 27 1 3.8746 -0.6807 0.8905 28 1 3.6580 -3.1505 0.8896 29 1 3.6587 -3.1500 -0.8904 30 1 4.3960 -4.8566 0.2108 31 1 5.5469 -5.5546 -0.9608 32 1 5.4971 -6.9151 1.0830 33 1 5.9308 -5.4798 2.0453 34 1 7.5879 -6.6817 -0.2067 35 1 7.9115 -6.8762 1.5259 36 1 10.2116 -4.6892 -1.8870 37 1 7.5505 -4.6205 -2.0049 38 1 8.3463 -3.0203 -1.9181 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408238997.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:19 Heat of formation + Delta-G solvation = -75.766918 kcal Electronic energy + Delta-G solvation = -20636.949716 eV Core-core repulsion = 17478.846104 eV Total energy + Delta-G solvation = -3158.103612 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.51760 -39.43818 -37.29358 -35.75083 -33.60997 -33.21182 -31.64230 -30.84644 -27.76903 -26.08980 -25.35261 -23.11504 -21.91538 -20.74047 -20.02079 -18.42911 -17.79529 -17.43946 -16.60331 -16.01294 -15.60633 -15.50664 -14.89458 -14.55457 -14.25534 -14.08171 -14.02770 -13.50929 -13.35723 -13.17251 -12.69623 -12.57123 -12.36632 -11.87829 -11.57557 -11.33907 -11.09370 -10.99894 -10.88784 -10.19474 -10.12448 -10.08253 -9.83322 -9.41667 -9.34810 -9.21534 -8.71588 -8.54559 -6.06989 -4.06169 2.29114 2.82765 2.88305 3.14177 3.34796 3.41870 3.51556 4.00101 4.15618 4.41329 4.47121 4.50273 4.70143 4.82411 4.96143 5.07411 5.16357 5.26115 5.28580 5.36513 5.44189 5.54697 5.61834 5.71096 5.79041 5.95353 5.97451 6.00070 6.44461 6.52871 6.60892 6.68651 7.29960 7.36754 7.39791 7.73974 7.94172 8.38622 8.49726 8.95559 9.55971 11.05758 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.037012 B = 0.004369 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.328418 B = 6407.678637 C = 6886.298188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.120 4.120 11 C 0.512 3.488 12 O -0.533 6.533 13 N -0.606 5.606 14 C 0.104 3.896 15 C -0.134 4.134 16 C -0.100 4.100 17 C -0.127 4.127 18 H 0.109 0.891 19 C 0.529 3.471 20 O -0.532 6.532 21 N -0.729 5.729 22 C 0.087 3.913 23 C 0.140 3.860 24 H 0.112 0.888 25 H 0.264 0.736 26 H 0.024 0.976 27 H 0.019 0.981 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.410 0.590 37 H 0.076 0.924 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.598 -13.142 -1.576 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.160 4.160 11 C 0.302 3.698 12 O -0.408 6.408 13 N -0.341 5.341 14 C -0.019 4.019 15 C -0.172 4.172 16 C -0.138 4.138 17 C -0.150 4.150 18 H 0.127 0.873 19 C 0.314 3.686 20 O -0.408 6.408 21 N -0.385 5.385 22 C -0.039 4.039 23 C 0.034 3.966 24 H 0.130 0.870 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.248 0.752 37 H 0.095 0.905 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.178 -12.750 -1.261 19.862 hybrid contribution 0.670 0.830 -0.390 1.136 sum 15.848 -11.919 -1.651 19.898 Atomic orbital electron populations 1.69906 1.06303 1.27019 1.50908 1.24963 0.94690 0.99216 0.94283 0.86809 0.80597 0.83445 0.78768 1.20231 1.21436 1.18559 1.21088 0.89194 0.94571 1.51535 0.90899 1.19391 0.96508 0.90104 0.97700 1.21723 0.87532 1.03395 1.03355 1.21735 0.91826 0.82236 0.73957 1.90659 1.70649 1.31092 1.48427 1.47379 1.04152 1.07233 1.75319 1.21520 0.97139 0.84041 0.99171 1.21509 0.95026 1.00590 1.00070 1.20874 0.95123 0.94853 1.02956 1.21571 0.94343 0.97418 1.01636 0.87317 1.20698 0.88349 0.77195 0.82343 1.90754 1.35773 1.42308 1.71941 1.46337 1.18705 1.57783 1.15670 1.22613 0.84001 0.98524 0.98742 1.20731 0.82133 0.99774 0.93976 0.87039 0.92677 0.95802 0.96267 0.89342 0.89351 0.87842 0.91591 0.89661 0.90737 0.91697 0.90572 0.75153 0.90538 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.53 -14.46 9.66 -34.44 -0.33 -14.80 16 8 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 9 C 0.00 0.02 3.33 -27.88 -0.09 -0.07 16 10 C -0.12 -2.13 3.94 -27.88 -0.11 -2.24 16 11 C 0.51 8.42 7.63 -10.98 -0.08 8.34 16 12 O -0.53 -10.77 15.33 5.56 0.09 -10.69 16 13 N -0.61 -7.28 2.71 -167.72 -0.45 -7.73 16 14 C 0.10 0.93 6.19 -4.70 -0.03 0.90 16 15 C -0.13 -1.02 6.06 -27.72 -0.17 -1.18 16 16 C -0.10 -0.83 5.15 -27.73 -0.14 -0.97 16 17 C -0.13 -1.27 3.04 -92.35 -0.28 -1.55 16 18 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 19 C 0.53 6.11 7.52 -10.92 -0.08 6.02 16 20 O -0.53 -8.06 18.03 5.56 0.10 -7.96 16 21 N -0.73 -6.69 6.26 -59.25 -0.37 -7.06 16 22 C 0.09 0.81 7.50 -3.14 -0.02 0.78 16 23 C 0.14 1.55 3.03 -68.45 -0.21 1.34 16 24 H 0.11 1.45 7.09 -51.93 -0.37 1.08 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.02 0.59 7.15 -51.93 -0.37 0.22 16 27 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 28 H 0.09 1.43 7.52 -51.93 -0.39 1.04 16 29 H 0.09 1.42 7.96 -51.93 -0.41 1.01 16 30 H 0.10 0.94 5.77 -51.93 -0.30 0.64 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.41 3.05 8.96 -40.82 -0.37 2.68 16 37 H 0.08 0.65 8.12 -51.93 -0.42 0.22 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 306.21 15.07 4.61 4.61 Total: -1.00 -34.24 306.21 -7.13 -41.36 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.56 Total: -1.79 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -1.65 Total: -1.51 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: -0.05 Total: -41.36 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.19 Total: -18.65 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.24 -7.13 -41.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408238997.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.404 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds