Wall clock time and date at job start Mon Mar 30 2020 04:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46653 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00049 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99541 * 180.02562 * 11 10 9 14 14 C 1.46462 * 118.95018 * 359.73683 * 13 11 10 15 15 C 1.51742 * 108.41190 * 227.99539 * 14 13 11 16 16 C 1.52313 * 108.99726 * 301.32347 * 15 14 13 17 17 C 1.51713 * 112.46926 * 60.66786 * 16 15 14 18 18 H 1.09002 * 110.44048 * 78.93044 * 17 16 15 19 19 C 1.51001 * 108.80758 * 198.94965 * 17 16 15 20 20 O 1.21278 * 125.43492 * 282.95459 * 19 17 16 21 21 N 1.34591 * 109.42302 * 102.35044 * 19 17 16 22 22 C 1.47026 * 111.19106 * 1.42939 * 21 19 17 23 23 C 1.44504 * 118.94238 * 179.97438 * 13 11 10 24 24 H 1.08999 * 109.57150 * 22.73726 * 23 13 11 25 25 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 27 27 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 28 28 H 1.08996 * 109.47332 * 299.99701 * 10 9 7 29 29 H 1.08996 * 109.46646 * 60.00565 * 10 9 7 30 30 H 1.09002 * 109.84450 * 348.61425 * 14 13 11 31 31 H 1.08994 * 109.85209 * 109.60064 * 14 13 11 32 32 H 1.09005 * 109.83222 * 181.21604 * 15 14 13 33 33 H 1.09009 * 109.15546 * 61.01975 * 15 14 13 34 34 H 1.09006 * 108.87977 * 299.90465 * 16 15 14 35 35 H 1.08995 * 108.80582 * 181.38970 * 16 15 14 36 36 H 0.96999 * 124.40393 * 181.43105 * 21 19 17 37 37 H 1.08993 * 110.37274 * 258.23020 * 22 21 19 38 38 H 1.08992 * 110.46490 * 135.94053 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5286 -2.6364 -0.0001 12 8 6.1350 -1.5861 0.0004 13 7 6.2025 -3.8036 -0.0008 14 6 5.4471 -5.0584 0.0045 15 6 6.0296 -5.9640 1.0736 16 6 7.5025 -6.2057 0.7702 17 6 8.3112 -4.9221 0.7631 18 1 8.5358 -4.6080 1.7824 19 6 9.6024 -5.1643 0.0185 20 8 10.5685 -5.7505 0.4586 21 7 9.5114 -4.6395 -1.2175 22 6 8.2127 -3.9811 -1.4212 23 6 7.6473 -3.7770 -0.0014 24 1 7.9951 -2.8233 0.3957 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6796 -0.8894 27 1 3.8746 -0.6807 0.8905 28 1 3.6580 -3.1505 0.8896 29 1 3.6587 -3.1500 -0.8904 30 1 4.3960 -4.8566 0.2108 31 1 5.5469 -5.5546 -0.9608 32 1 5.4971 -6.9151 1.0830 33 1 5.9308 -5.4798 2.0453 34 1 7.5879 -6.6817 -0.2067 35 1 7.9115 -6.8762 1.5259 36 1 10.2116 -4.6892 -1.8870 37 1 7.5505 -4.6205 -2.0049 38 1 8.3463 -3.0203 -1.9181 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408238997.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:19 Heat of formation + Delta-G solvation = -100.945352 kcal Electronic energy + Delta-G solvation = -20638.041535 eV Core-core repulsion = 17478.846104 eV Total energy + Delta-G solvation = -3159.195431 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.43435 -40.59244 -38.36472 -36.63485 -35.53915 -34.17295 -33.31479 -31.89348 -28.90808 -27.60144 -26.17597 -24.18467 -23.17929 -21.89513 -21.10164 -19.55604 -19.06844 -18.60027 -18.06026 -17.05351 -16.70794 -16.56175 -16.17088 -15.94627 -15.36427 -15.23878 -14.85484 -14.72583 -14.59726 -14.36146 -14.23736 -13.68342 -13.44670 -13.31788 -12.88893 -12.61403 -12.30383 -11.99743 -11.93806 -11.82067 -11.69991 -11.62154 -11.34015 -11.07740 -10.74793 -10.66313 -10.25057 -9.70295 -8.28256 -6.30484 1.35343 1.38084 1.38483 1.51813 1.61559 1.85323 2.30600 2.37446 3.08164 3.16092 3.30870 3.59957 3.71273 3.88779 3.99327 4.12295 4.23007 4.39256 4.42082 4.51880 4.58888 4.64426 4.66565 4.85144 4.89192 4.99251 5.07571 5.16109 5.35425 5.38246 5.48797 5.60367 5.64432 5.66744 5.87047 6.25453 6.31830 6.76601 7.09768 7.19394 7.35099 8.87269 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.037012 B = 0.004369 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.328418 B = 6407.678637 C = 6886.298188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.015 3.985 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.003 3.997 10 C -0.113 4.113 11 C 0.516 3.484 12 O -0.579 6.579 13 N -0.591 5.591 14 C 0.094 3.906 15 C -0.126 4.126 16 C -0.097 4.097 17 C -0.121 4.121 18 H 0.105 0.895 19 C 0.527 3.473 20 O -0.572 6.572 21 N -0.716 5.716 22 C 0.094 3.906 23 C 0.137 3.863 24 H 0.089 0.911 25 H 0.266 0.734 26 H 0.011 0.989 27 H 0.006 0.994 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.420 0.580 37 H 0.095 0.905 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.343 -14.441 -2.103 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.183 4.183 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.035 4.035 10 C -0.153 4.153 11 C 0.306 3.694 12 O -0.458 6.458 13 N -0.323 5.323 14 C -0.027 4.027 15 C -0.164 4.164 16 C -0.136 4.136 17 C -0.143 4.143 18 H 0.123 0.877 19 C 0.313 3.687 20 O -0.451 6.451 21 N -0.371 5.371 22 C -0.032 4.032 23 C 0.031 3.969 24 H 0.107 0.893 25 H 0.075 0.925 26 H 0.029 0.971 27 H 0.025 0.975 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.130 0.870 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.260 0.740 37 H 0.113 0.887 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.929 -14.092 -1.813 21.345 hybrid contribution 0.423 1.148 -0.236 1.246 sum 16.352 -12.944 -2.048 20.955 Atomic orbital electron populations 1.70018 1.07768 1.27980 1.52714 1.25762 0.95402 1.02693 0.94441 0.85888 0.79352 0.79812 0.79003 1.19640 1.20658 1.18393 1.21438 0.91243 0.93708 1.49938 0.92815 1.19249 0.93917 0.93940 0.96348 1.21537 0.88791 0.99749 1.05192 1.21369 0.91229 0.82827 0.73951 1.90647 1.71171 1.32973 1.50981 1.47254 1.04616 1.07048 1.73416 1.21864 0.96931 0.82780 1.01158 1.21492 0.94547 1.01391 0.98987 1.20897 0.95254 0.93720 1.03681 1.21543 0.93776 0.97919 1.01055 0.87653 1.20885 0.88194 0.76694 0.82883 1.90737 1.37169 1.44352 1.72839 1.46279 1.18975 1.56598 1.15249 1.22573 0.84004 0.99070 0.97517 1.20714 0.81467 0.99268 0.95450 0.89267 0.92488 0.97096 0.97514 0.87676 0.87419 0.87594 0.89099 0.86984 0.91536 0.90830 0.90125 0.74000 0.88655 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.71 13.96 21.45 0.30 -57.41 16 2 C 0.01 0.84 5.47 84.65 0.46 1.31 16 3 Si 0.93 45.49 27.47 68.60 1.88 47.37 16 4 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.26 -12.47 6.54 99.48 0.65 -11.82 16 7 C -0.53 -28.92 9.66 25.60 0.25 -28.67 16 8 H 0.05 3.09 7.99 -2.92 -0.02 3.07 16 9 C 0.00 0.16 3.33 29.85 0.10 0.26 16 10 C -0.11 -3.82 3.94 29.85 0.12 -3.70 16 11 C 0.52 16.25 7.63 87.66 0.67 16.91 16 12 O -0.58 -23.19 15.33 -3.02 -0.05 -23.24 16 13 N -0.59 -12.86 2.71 -802.93 -2.18 -15.03 16 14 C 0.09 1.35 6.19 85.97 0.53 1.88 16 15 C -0.13 -1.47 6.06 29.95 0.18 -1.29 16 16 C -0.10 -1.33 5.15 29.94 0.15 -1.17 16 17 C -0.12 -2.20 3.04 -11.92 -0.04 -2.24 16 18 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 19 C 0.53 11.42 7.52 87.78 0.66 12.08 16 20 O -0.57 -16.90 18.03 -3.02 -0.05 -16.96 16 21 N -0.72 -11.71 6.26 -459.86 -2.88 -14.59 16 22 C 0.09 1.52 7.50 86.68 0.65 2.17 16 23 C 0.14 2.81 3.03 45.72 0.14 2.94 16 24 H 0.09 2.28 7.09 -2.39 -0.02 2.27 16 25 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 26 H 0.01 0.53 7.15 -2.39 -0.02 0.51 16 27 H 0.01 0.32 7.53 -2.39 -0.02 0.30 16 28 H 0.11 3.19 7.52 -2.39 -0.02 3.17 16 29 H 0.11 3.20 7.96 -2.39 -0.02 3.19 16 30 H 0.11 1.54 5.77 -2.39 -0.01 1.53 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.07 0.91 7.92 -2.38 -0.02 0.89 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.42 5.40 8.96 -92.71 -0.83 4.57 16 37 H 0.10 1.25 8.12 -2.39 -0.02 1.23 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -74.61 306.21 1.08 -73.52 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 0.18 Total: 5.86 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 3.88 Total: 0.48 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -4.76 Total: -87.03 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -0.10 Total: -40.20 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.37 kcal Total: -74.61 1.08 -73.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408238997.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.422 kcal (2) G-P(sol) polarization free energy of solvation -74.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds