Wall clock time and date at job start Mon Mar 30 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47023 * 2 1 4 4 H 1.08998 * 109.46982 * 305.35641 * 3 2 1 5 5 C 1.50702 * 109.46873 * 185.35932 * 3 2 1 6 6 O 1.21287 * 119.99651 * 239.99549 * 5 3 2 7 7 N 1.34778 * 120.00367 * 60.00025 * 5 3 2 8 8 C 1.46494 * 120.00201 * 180.02562 * 7 5 3 9 9 C 1.50693 * 109.47395 * 180.02562 * 8 7 5 10 10 H 1.08005 * 120.00036 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00466 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00189 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00402 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46819 * 60.00128 * 13 11 9 15 15 H 1.48502 * 109.47118 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47232 * 300.00481 * 13 11 9 17 17 C 1.50693 * 109.47204 * 65.35910 * 3 2 1 18 18 C 1.41381 * 128.00929 * 63.84700 * 17 3 2 19 19 C 1.50703 * 126.79971 * 0.03895 * 18 17 3 20 20 N 1.30172 * 106.39862 * 180.02562 * 18 17 3 21 21 O 1.20929 * 111.60418 * 359.72578 * 20 18 17 22 22 C 1.34041 * 111.56221 * 0.45024 * 21 20 18 23 23 C 1.50697 * 126.77416 * 179.83051 * 22 21 20 24 24 H 1.08999 * 109.47071 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47334 * 299.99952 * 1 2 3 26 26 H 1.09000 * 109.47458 * 60.00285 * 1 2 3 27 27 H 1.09005 * 109.47334 * 240.00048 * 2 1 3 28 28 H 1.09001 * 109.46984 * 119.99956 * 2 1 3 29 29 H 0.97006 * 119.99555 * 359.97438 * 7 5 3 30 30 H 1.09007 * 109.47163 * 299.99850 * 8 7 5 31 31 H 1.08998 * 109.47325 * 59.99533 * 8 7 5 32 32 H 0.96992 * 120.00000 * 180.02562 * 12 11 9 33 33 H 1.09000 * 109.47243 * 95.33942 * 19 18 17 34 34 H 1.09005 * 109.46512 * 215.33816 * 19 18 17 35 35 H 1.08994 * 109.47100 * 335.33239 * 19 18 17 36 36 H 1.09007 * 109.47001 * 269.68856 * 23 22 21 37 37 H 1.09001 * 109.47145 * 29.68094 * 23 22 21 38 38 H 1.08998 * 109.47666 * 149.68319 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6004 1.9833 -0.8381 5 6 3.5411 1.4446 -0.1327 6 8 4.2260 1.9421 0.7359 7 7 4.1226 0.8937 -1.2166 8 6 5.5819 0.8951 -1.3453 9 6 5.9730 0.2248 -2.6370 10 1 5.2107 -0.1639 -3.2961 11 6 7.3038 0.1077 -2.9776 12 7 8.2321 0.5814 -2.1754 13 14 7.7886 -0.7240 -4.5785 14 1 7.1897 0.0130 -5.7203 15 1 9.2679 -0.7212 -4.7096 16 1 7.2937 -2.1240 -4.5787 17 6 1.6489 2.1136 1.2914 18 6 2.0612 1.7846 2.6031 19 6 2.9976 0.6737 3.0031 20 7 1.4721 2.6316 3.3968 21 8 0.7832 3.4127 2.7822 22 6 0.8205 3.1712 1.4642 23 6 0.0902 3.9307 0.3868 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.5748 0.4955 -1.9112 30 1 5.9456 1.9227 -1.3451 31 1 6.0211 0.3541 -0.5072 32 1 9.1683 0.4994 -2.4152 33 1 4.0089 1.0685 3.1014 34 1 2.6771 0.2541 3.9568 35 1 2.9841 -0.1051 2.2407 36 1 -0.8847 3.4735 0.2172 37 1 -0.0437 4.9663 0.6994 38 1 0.6705 3.9017 -0.5354 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427639151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:22 Heat of formation + Delta-G solvation = -0.605267 kcal Electronic energy + Delta-G solvation = -20654.931950 eV Core-core repulsion = 17500.087592 eV Total energy + Delta-G solvation = -3154.844358 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.72233 -39.27083 -35.92456 -34.29644 -33.70618 -32.87252 -32.17496 -28.91187 -28.38979 -27.58906 -26.43626 -23.00046 -22.59846 -21.17014 -19.99424 -19.49200 -17.61735 -17.21899 -16.50592 -15.76336 -15.43359 -14.97802 -14.54238 -14.19478 -13.94448 -13.47089 -13.37081 -13.23260 -12.91330 -12.80544 -12.54851 -12.31960 -12.16218 -12.07136 -11.89178 -11.66424 -11.21420 -11.03977 -10.98735 -10.87760 -10.50752 -10.33543 -9.57343 -9.44046 -9.19522 -8.81701 -8.75712 -7.91406 -6.19263 -4.26609 1.61932 2.44387 3.22914 3.25506 3.28147 3.29296 3.29945 4.03162 4.32390 4.42453 4.59798 4.83534 4.84646 5.01670 5.15132 5.16893 5.26656 5.29926 5.38112 5.44753 5.56571 5.71465 5.73029 5.81585 5.84828 5.91191 6.01733 6.06020 6.16825 6.18869 6.49093 7.27248 7.39504 7.48415 7.62911 7.94113 8.50322 8.58279 8.74681 9.05869 9.40249 10.90825 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028613 B = 0.004559 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.326078 B = 6139.723274 C = 6398.086745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.033 4.033 4 H 0.102 0.898 5 C 0.502 3.498 6 O -0.544 6.544 7 N -0.710 5.710 8 C 0.251 3.749 9 C -0.544 4.544 10 H 0.062 0.938 11 C 0.065 3.935 12 N -0.885 5.885 13 Si 0.903 3.097 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.165 4.165 18 C 0.057 3.943 19 C -0.072 4.072 20 N -0.378 5.378 21 O 0.090 5.910 22 C -0.040 4.040 23 C -0.071 4.071 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.390 0.610 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.267 0.733 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.426 0.977 2.972 17.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.055 4.055 4 H 0.120 0.880 5 C 0.285 3.715 6 O -0.422 6.422 7 N -0.359 5.359 8 C 0.131 3.869 9 C -0.583 4.583 10 H 0.080 0.920 11 C -0.139 4.139 12 N -0.523 5.523 13 Si 0.730 3.270 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.200 1.200 17 C -0.169 4.169 18 C -0.102 4.102 19 C -0.130 4.130 20 N -0.086 5.086 21 O 0.027 5.973 22 C -0.103 4.103 23 C -0.129 4.129 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.223 0.777 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.686 1.551 4.930 17.468 hybrid contribution 0.369 -0.814 -1.969 2.162 sum -16.317 0.737 2.961 16.600 Atomic orbital electron populations 1.21756 0.95142 1.01757 1.01845 1.21589 0.96431 0.93865 1.03493 1.19715 0.94593 0.97260 0.93910 0.88001 1.20211 0.88930 0.79419 0.82910 1.90672 1.64875 1.45948 1.40712 1.46446 1.10832 1.57698 1.20901 1.19089 0.73193 0.97614 0.97040 1.21177 0.92489 1.39605 1.04988 0.91961 1.24945 0.96229 0.95349 0.97414 1.69962 1.00821 1.44751 1.36731 0.86485 0.77523 0.79878 0.83081 1.20067 1.21066 1.20046 1.20286 1.01706 0.99374 0.95507 1.23252 0.98835 0.98525 0.89562 1.20218 0.97703 0.93798 1.01256 1.73775 1.09634 1.04366 1.20806 1.84757 1.51873 1.44235 1.16416 1.24077 1.01759 0.98255 0.86231 1.20301 0.99531 0.99583 0.93462 0.92445 0.92848 0.92484 0.90424 0.90984 0.77742 0.95624 0.95544 0.92371 0.89237 0.91474 0.90457 0.89662 0.89973 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.73 37.16 0.36 -1.01 16 2 C -0.12 -1.35 5.30 -26.73 -0.14 -1.49 16 3 C -0.03 -0.45 2.46 -92.92 -0.23 -0.68 16 4 H 0.10 1.17 7.10 -51.93 -0.37 0.80 16 5 C 0.50 9.52 6.84 -10.98 -0.08 9.45 16 6 O -0.54 -12.56 13.99 5.55 0.08 -12.49 16 7 N -0.71 -14.18 5.41 -61.48 -0.33 -14.51 16 8 C 0.25 6.46 5.43 -5.20 -0.03 6.44 16 9 C -0.54 -14.38 9.28 -34.45 -0.32 -14.70 16 10 H 0.06 1.53 7.60 -52.48 -0.40 1.13 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 13 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 14 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 C -0.16 -2.45 3.53 -104.43 -0.37 -2.82 16 18 C 0.06 0.95 6.66 -82.10 -0.55 0.40 16 19 C -0.07 -1.12 9.01 36.01 0.32 -0.79 16 20 N -0.38 -6.40 12.07 33.42 0.40 -6.00 16 21 O 0.09 1.36 11.20 17.17 0.19 1.56 16 22 C -0.04 -0.52 7.49 -35.30 -0.26 -0.79 16 23 C -0.07 -0.60 10.19 36.00 0.37 -0.23 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.54 7.39 -51.93 -0.38 0.15 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.85 7.42 -51.93 -0.39 0.47 16 28 H 0.07 0.90 5.76 -51.93 -0.30 0.60 16 29 H 0.39 6.59 7.68 -40.82 -0.31 6.28 16 30 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.09 1.55 7.72 -51.93 -0.40 1.15 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.14 5.74 -51.93 -0.30 0.84 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.70 7.34 -51.93 -0.38 0.32 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -32.58 317.24 -5.50 -38.08 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.32 Total: 2.73 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -1.02 Total: -4.57 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.81 Total: -45.53 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.27 Total: -10.93 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.58 -5.50 -38.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427639151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.476 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds