Wall clock time and date at job start Mon Mar 30 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47023 * 2 1 4 4 H 1.08998 * 109.46982 * 305.35641 * 3 2 1 5 5 C 1.50702 * 109.46873 * 185.35932 * 3 2 1 6 6 O 1.21287 * 119.99651 * 239.99549 * 5 3 2 7 7 N 1.34778 * 120.00367 * 60.00025 * 5 3 2 8 8 C 1.46494 * 120.00201 * 180.02562 * 7 5 3 9 9 C 1.50693 * 109.47395 * 180.02562 * 8 7 5 10 10 H 1.08005 * 120.00036 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00466 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00189 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00402 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46819 * 60.00128 * 13 11 9 15 15 H 1.48502 * 109.47118 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47232 * 300.00481 * 13 11 9 17 17 C 1.50693 * 109.47204 * 65.35910 * 3 2 1 18 18 C 1.41381 * 128.00929 * 63.84700 * 17 3 2 19 19 C 1.50703 * 126.79971 * 0.03895 * 18 17 3 20 20 N 1.30172 * 106.39862 * 180.02562 * 18 17 3 21 21 O 1.20929 * 111.60418 * 359.72578 * 20 18 17 22 22 C 1.34041 * 111.56221 * 0.45024 * 21 20 18 23 23 C 1.50697 * 126.77416 * 179.83051 * 22 21 20 24 24 H 1.08999 * 109.47071 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47334 * 299.99952 * 1 2 3 26 26 H 1.09000 * 109.47458 * 60.00285 * 1 2 3 27 27 H 1.09005 * 109.47334 * 240.00048 * 2 1 3 28 28 H 1.09001 * 109.46984 * 119.99956 * 2 1 3 29 29 H 0.97006 * 119.99555 * 359.97438 * 7 5 3 30 30 H 1.09007 * 109.47163 * 299.99850 * 8 7 5 31 31 H 1.08998 * 109.47325 * 59.99533 * 8 7 5 32 32 H 0.96992 * 120.00000 * 180.02562 * 12 11 9 33 33 H 1.09000 * 109.47243 * 95.33942 * 19 18 17 34 34 H 1.09005 * 109.46512 * 215.33816 * 19 18 17 35 35 H 1.08994 * 109.47100 * 335.33239 * 19 18 17 36 36 H 1.09007 * 109.47001 * 269.68856 * 23 22 21 37 37 H 1.09001 * 109.47145 * 29.68094 * 23 22 21 38 38 H 1.08998 * 109.47666 * 149.68319 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6004 1.9833 -0.8381 5 6 3.5411 1.4446 -0.1327 6 8 4.2260 1.9421 0.7359 7 7 4.1226 0.8937 -1.2166 8 6 5.5819 0.8951 -1.3453 9 6 5.9730 0.2248 -2.6370 10 1 5.2107 -0.1639 -3.2961 11 6 7.3038 0.1077 -2.9776 12 7 8.2321 0.5814 -2.1754 13 14 7.7886 -0.7240 -4.5785 14 1 7.1897 0.0130 -5.7203 15 1 9.2679 -0.7212 -4.7096 16 1 7.2937 -2.1240 -4.5787 17 6 1.6489 2.1136 1.2914 18 6 2.0612 1.7846 2.6031 19 6 2.9976 0.6737 3.0031 20 7 1.4721 2.6316 3.3968 21 8 0.7832 3.4127 2.7822 22 6 0.8205 3.1712 1.4642 23 6 0.0902 3.9307 0.3868 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.5748 0.4955 -1.9112 30 1 5.9456 1.9227 -1.3451 31 1 6.0211 0.3541 -0.5072 32 1 9.1683 0.4994 -2.4152 33 1 4.0089 1.0685 3.1014 34 1 2.6771 0.2541 3.9568 35 1 2.9841 -0.1051 2.2407 36 1 -0.8847 3.4735 0.2172 37 1 -0.0437 4.9663 0.6994 38 1 0.6705 3.9017 -0.5354 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427639151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:22 Heat of formation + Delta-G solvation = -22.890802 kcal Electronic energy + Delta-G solvation = -20655.898324 eV Core-core repulsion = 17500.087592 eV Total energy + Delta-G solvation = -3155.810732 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.90389 -40.79739 -37.17277 -36.11042 -34.93359 -34.32713 -33.58575 -30.14587 -29.65797 -28.96478 -27.74387 -24.81533 -23.69874 -22.53340 -21.14659 -20.96220 -19.08312 -18.62255 -17.83764 -17.39387 -17.02271 -16.37181 -16.13318 -15.61975 -15.12740 -14.78971 -14.43219 -14.19128 -14.13268 -14.00207 -13.85496 -13.72825 -13.68126 -13.21441 -13.07441 -12.87484 -12.83832 -12.65789 -12.21901 -12.17840 -11.93004 -11.55429 -11.47952 -10.82957 -10.77202 -10.63654 -10.01183 -9.78538 -8.27410 -6.43914 0.54125 1.22060 1.44746 1.48340 1.56509 1.77740 2.25251 2.34865 2.62946 3.07845 3.23041 3.57621 3.66271 3.82475 4.03315 4.17305 4.26706 4.41950 4.50373 4.55674 4.64698 4.74988 4.76239 4.80979 4.87350 4.98837 5.08389 5.14581 5.20470 5.26372 5.28377 5.30293 5.45725 5.50916 5.71953 5.86922 6.67361 6.93796 7.25696 7.36314 7.52385 8.84447 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028613 B = 0.004559 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.326078 B = 6139.723274 C = 6398.086745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C -0.015 4.015 4 H 0.137 0.863 5 C 0.499 3.501 6 O -0.590 6.590 7 N -0.703 5.703 8 C 0.269 3.731 9 C -0.554 4.554 10 H 0.086 0.914 11 C 0.004 3.996 12 N -0.933 5.933 13 Si 0.983 3.017 14 H -0.261 1.261 15 H -0.288 1.288 16 H -0.261 1.261 17 C -0.190 4.190 18 C 0.036 3.964 19 C -0.068 4.068 20 N -0.404 5.404 21 O 0.086 5.914 22 C -0.022 4.022 23 C -0.074 4.074 24 H 0.068 0.932 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.408 0.592 30 H -0.016 1.016 31 H -0.014 1.014 32 H 0.268 0.732 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.149 0.480 0.470 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.153 4.153 3 C -0.037 4.037 4 H 0.155 0.845 5 C 0.285 3.715 6 O -0.471 6.471 7 N -0.353 5.353 8 C 0.146 3.854 9 C -0.592 4.592 10 H 0.104 0.896 11 C -0.195 4.195 12 N -0.571 5.571 13 Si 0.806 3.194 14 H -0.186 1.186 15 H -0.214 1.214 16 H -0.186 1.186 17 C -0.194 4.194 18 C -0.122 4.122 19 C -0.126 4.126 20 N -0.113 5.113 21 O 0.024 5.976 22 C -0.085 4.085 23 C -0.130 4.130 24 H 0.087 0.913 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.245 0.755 30 H 0.002 0.998 31 H 0.004 0.996 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.135 0.865 37 H 0.115 0.885 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.470 1.044 2.417 19.647 hybrid contribution 1.186 -0.587 -1.118 1.732 sum -18.284 0.458 1.299 18.336 Atomic orbital electron populations 1.21701 0.92717 1.02776 1.02499 1.21631 0.98428 0.91958 1.03265 1.19682 0.89877 0.99376 0.94749 0.84517 1.21201 0.91318 0.77549 0.81383 1.90661 1.66683 1.47584 1.42132 1.46137 1.08605 1.58382 1.22181 1.18491 0.76482 0.94499 0.95895 1.21595 0.93301 1.39150 1.05108 0.89608 1.26047 0.96243 0.95864 1.01384 1.70137 1.01275 1.46487 1.39238 0.85239 0.76823 0.79189 0.78171 1.18563 1.21410 1.18575 1.20442 1.03103 1.00721 0.95119 1.23509 0.99168 0.98795 0.90771 1.20147 0.96168 0.93868 1.02384 1.73753 1.10691 1.05108 1.21764 1.84717 1.51494 1.43808 1.17558 1.24921 1.00421 0.97096 0.86086 1.20629 1.00512 1.00061 0.91846 0.91338 0.93684 0.90234 0.89472 0.92494 0.75543 0.99774 0.99578 0.92368 0.92068 0.89758 0.90156 0.86483 0.88467 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.73 71.98 0.70 -1.40 16 2 C -0.12 -2.41 5.30 30.59 0.16 -2.25 16 3 C -0.02 -0.39 2.46 -12.29 -0.03 -0.42 16 4 H 0.14 2.59 7.10 -2.39 -0.02 2.57 16 5 C 0.50 19.04 6.84 87.66 0.60 19.64 16 6 O -0.59 -28.48 13.99 -3.05 -0.04 -28.53 16 7 N -0.70 -28.08 5.41 -466.80 -2.52 -30.61 16 8 C 0.27 14.39 5.43 85.63 0.46 14.86 16 9 C -0.55 -29.24 9.28 25.60 0.24 -29.00 16 10 H 0.09 4.03 7.60 -2.91 -0.02 4.00 16 11 C 0.00 0.22 5.46 84.65 0.46 0.69 16 12 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 13 Si 0.98 41.40 29.54 68.60 2.03 43.42 16 14 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 15 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 17 C -0.19 -5.43 3.53 -19.74 -0.07 -5.50 16 18 C 0.04 1.20 6.66 43.58 0.29 1.49 16 19 C -0.07 -2.22 9.01 71.24 0.64 -1.57 16 20 N -0.40 -13.80 12.07 -49.55 -0.60 -14.40 16 21 O 0.09 2.54 11.20 71.61 0.80 3.34 16 22 C -0.02 -0.52 7.49 25.04 0.19 -0.33 16 23 C -0.07 -0.93 10.19 71.23 0.73 -0.20 16 24 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.04 0.77 7.39 -2.38 -0.02 0.75 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.09 1.66 7.42 -2.38 -0.02 1.64 16 28 H 0.06 1.37 5.76 -2.39 -0.01 1.36 16 29 H 0.41 13.11 7.68 -92.70 -0.71 12.40 16 30 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 31 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 32 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 33 H 0.06 2.30 7.72 -2.39 -0.02 2.29 16 34 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.08 2.47 5.74 -2.39 -0.01 2.46 16 36 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.10 1.12 7.34 -2.39 -0.02 1.10 16 Total: -1.00 -74.98 317.24 4.69 -70.30 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.36 Total: 16.04 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 4.37 Total: -4.01 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -2.84 Total: -100.56 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: 0.76 Total: -25.19 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -74.98 4.69 -70.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427639151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.407 kcal (2) G-P(sol) polarization free energy of solvation -74.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds