Wall clock time and date at job start Mon Mar 30 2020 05:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.31005 * 120.00114 * 2 1 4 4 C 1.50697 * 119.99831 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47174 * 125.00370 * 4 3 2 6 6 H 1.08998 * 110.53647 * 56.37360 * 5 4 3 7 7 N 1.47317 * 110.59824 * 293.54655 * 5 4 3 8 8 C 1.34527 * 106.61579 * 241.70024 * 7 5 4 9 9 O 1.21542 * 123.76861 * 179.76750 * 8 7 5 10 10 N 1.33785 * 112.46096 * 359.60545 * 8 7 5 11 11 C 1.46504 * 124.17976 * 180.13940 * 10 8 7 12 12 C 1.52998 * 109.47172 * 270.30611 * 11 10 8 13 13 C 1.53002 * 109.47168 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47184 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00005 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99901 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00202 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99898 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47480 * 59.99666 * 18 16 14 20 20 H 1.48507 * 109.47127 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47168 * 299.99446 * 18 16 14 22 22 C 1.34771 * 111.64603 * 0.41435 * 10 8 7 23 23 O 1.21225 * 127.16028 * 179.79499 * 22 10 8 24 24 H 1.09003 * 109.47307 * 299.99992 * 1 2 3 25 25 H 1.09001 * 109.47281 * 60.00023 * 1 2 3 26 26 H 1.08998 * 109.47258 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.00095 * 179.97438 * 2 1 3 28 28 H 1.07998 * 119.99789 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47224 * 5.00101 * 4 3 2 30 30 H 1.09008 * 109.47085 * 245.00354 * 4 3 2 31 31 H 0.97001 * 126.68790 * 61.42942 * 7 5 4 32 32 H 1.09000 * 109.46960 * 30.30810 * 11 10 8 33 33 H 1.08998 * 109.46918 * 150.30893 * 11 10 8 34 34 H 1.09000 * 109.47340 * 299.99965 * 12 11 10 35 35 H 1.09003 * 109.47405 * 60.00146 * 12 11 10 36 36 H 1.09000 * 109.47014 * 300.00229 * 13 12 11 37 37 H 1.08995 * 109.47315 * 60.00113 * 13 12 11 38 38 H 0.96995 * 120.00287 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 -0.0006 5 6 1.8696 3.2953 1.1810 6 1 2.9479 3.4496 1.1434 7 7 1.4796 2.6704 2.4568 8 6 0.6509 3.5342 3.0707 9 8 0.1381 3.3254 4.1527 10 7 0.4569 4.6502 2.3588 11 6 -0.3953 5.7621 2.7873 12 6 -1.8233 5.5317 2.2886 13 6 -2.7135 6.6926 2.7367 14 6 -4.1202 6.4653 2.2461 15 1 -4.3556 5.5815 1.6718 16 6 -5.1064 7.3863 2.5295 17 7 -4.8196 8.4627 3.2284 18 14 -6.8501 7.1042 1.9220 19 1 -7.3720 5.8342 2.4875 20 1 -7.7142 8.2311 2.3568 21 1 -6.8507 7.0230 0.4392 22 6 1.1377 4.6226 1.1960 23 8 1.1605 5.4811 0.3403 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 2.0469 -0.9353 0.0004 28 1 3.2419 1.1345 -0.0004 29 1 0.3402 2.2424 0.0886 30 1 1.6032 2.9712 -0.9321 31 1 1.7619 1.8034 2.7876 32 1 -0.3956 5.8211 3.8757 33 1 -0.0118 6.6944 2.3728 34 1 -1.8231 5.4726 1.2002 35 1 -2.2069 4.5993 2.7030 36 1 -2.7137 6.7512 3.8251 37 1 -2.3302 7.6251 2.3227 38 1 -5.5134 9.1104 3.4281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431406394.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:55 Heat of formation + Delta-G solvation = -45.796090 kcal Electronic energy + Delta-G solvation = -20128.238263 eV Core-core repulsion = 16971.434284 eV Total energy + Delta-G solvation = -3156.803980 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.34994 -38.48770 -37.20606 -35.77371 -35.17519 -33.36488 -31.36750 -30.41804 -27.55611 -26.90972 -24.63467 -23.66890 -22.28234 -20.79070 -20.01005 -18.84006 -17.99878 -16.87814 -16.58378 -16.30215 -15.82672 -15.28894 -15.16358 -14.42202 -14.40749 -14.02840 -13.93039 -13.91404 -13.40944 -13.14748 -12.50350 -12.16327 -12.06726 -11.94633 -11.48471 -11.25228 -10.99763 -10.84041 -10.81295 -10.53161 -10.15927 -9.79775 -9.74929 -9.70444 -9.29051 -9.24556 -8.99345 -8.33135 -5.98286 -4.00600 1.59896 1.87970 2.35619 3.09685 3.13821 3.35705 3.39605 3.42440 3.91116 4.44781 4.48064 4.53273 4.69825 4.81878 5.07600 5.19565 5.23063 5.37766 5.41290 5.47870 5.67178 5.69599 5.75989 5.76995 5.79273 6.02786 6.28888 6.45083 6.53348 6.73615 6.75799 7.02335 7.19169 7.45365 7.65611 7.79268 8.00004 8.20505 8.42653 9.04913 9.63101 11.13177 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.021885 B = 0.004281 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.090732 B = 6538.402652 C = 7003.346085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.148 4.148 3 C -0.168 4.168 4 C -0.098 4.098 5 C 0.099 3.901 6 H 0.125 0.875 7 N -0.727 5.727 8 C 0.700 3.300 9 O -0.538 6.538 10 N -0.571 5.571 11 C 0.115 3.885 12 C -0.123 4.123 13 C 0.025 3.975 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.522 3.478 23 O -0.465 6.465 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.436 0.564 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.957 -15.141 -5.829 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C -0.186 4.186 4 C -0.136 4.136 5 C -0.010 4.010 6 H 0.142 0.858 7 N -0.392 5.392 8 C 0.400 3.600 9 O -0.411 6.411 10 N -0.316 5.316 11 C -0.005 4.005 12 C -0.161 4.161 13 C -0.012 4.012 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C 0.308 3.692 23 O -0.334 6.334 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.280 0.720 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.538 -14.488 -5.601 22.688 hybrid contribution -0.776 -0.528 -0.190 0.958 sum 15.762 -15.016 -5.791 22.527 Atomic orbital electron populations 1.20948 0.93152 1.02468 1.02479 1.22898 0.96456 0.97806 0.99425 1.22654 0.99531 0.93470 1.02952 1.20984 1.01421 0.94248 0.96918 1.22015 1.01668 0.91106 0.86196 0.85751 1.45557 1.51147 1.21856 1.20610 1.15949 0.79681 0.80444 0.83897 1.91026 1.52996 1.77562 1.19547 1.46630 1.45153 1.19621 1.20215 1.22103 0.90896 0.85866 1.01605 1.22001 0.91830 1.02106 1.00182 1.19027 0.93372 0.91918 0.96897 1.21144 0.93863 1.06617 1.34222 0.92778 1.25005 0.98999 0.95155 0.95201 1.69944 1.33580 1.10770 1.39136 0.86640 0.84390 0.77685 0.79186 1.20239 1.21242 1.20242 1.20780 0.78952 0.88148 0.81356 1.90811 1.61246 1.42227 1.39146 0.91174 0.91364 0.92070 0.87118 0.86792 0.89583 0.88298 0.71964 0.88865 0.89051 0.92888 0.92616 0.96145 0.96224 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 8.65 36.00 0.31 -0.70 16 2 C -0.15 -0.97 10.26 -36.03 -0.37 -1.34 16 3 C -0.17 -1.06 9.32 -36.03 -0.34 -1.40 16 4 C -0.10 -0.79 5.23 -27.89 -0.15 -0.93 16 5 C 0.10 0.90 3.67 -68.20 -0.25 0.65 16 6 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 7 N -0.73 -7.23 6.03 -59.19 -0.36 -7.58 16 8 C 0.70 10.42 8.62 -88.02 -0.76 9.66 16 9 O -0.54 -10.08 17.49 5.33 0.09 -9.99 16 10 N -0.57 -8.84 2.60 -120.73 -0.31 -9.16 16 11 C 0.11 2.06 5.70 -4.04 -0.02 2.03 16 12 C -0.12 -2.63 5.48 -26.73 -0.15 -2.78 16 13 C 0.03 0.67 4.97 -27.88 -0.14 0.53 16 14 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 18 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.52 7.17 7.65 -10.55 -0.08 7.09 16 23 O -0.46 -7.66 17.76 5.60 0.10 -7.56 16 24 H 0.07 0.61 7.66 -51.93 -0.40 0.21 16 25 H 0.07 0.53 7.85 -51.93 -0.41 0.12 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.11 0.59 8.06 -52.48 -0.42 0.17 16 28 H 0.11 0.55 8.06 -52.49 -0.42 0.12 16 29 H 0.09 0.82 5.79 -51.93 -0.30 0.51 16 30 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 31 H 0.44 3.33 8.96 -40.82 -0.37 2.96 16 32 H 0.09 1.67 7.87 -51.93 -0.41 1.27 16 33 H 0.09 1.58 8.00 -51.93 -0.42 1.17 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 327.44 15.07 4.93 4.93 Total: -1.00 -33.84 327.44 -7.82 -41.66 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -5.64 Total: -1.87 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -2.35 Total: -0.95 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.06 Total: -43.21 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.19 Total: -17.55 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.84 -7.82 -41.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431406394.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.139 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds