Wall clock time and date at job start Mon Mar 30 2020 05:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.31005 * 120.00114 * 2 1 4 4 C 1.50697 * 119.99831 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47174 * 125.00370 * 4 3 2 6 6 H 1.08998 * 110.53647 * 56.37360 * 5 4 3 7 7 N 1.47317 * 110.59824 * 293.54655 * 5 4 3 8 8 C 1.34527 * 106.61579 * 241.70024 * 7 5 4 9 9 O 1.21542 * 123.76861 * 179.76750 * 8 7 5 10 10 N 1.33785 * 112.46096 * 359.60545 * 8 7 5 11 11 C 1.46504 * 124.17976 * 180.13940 * 10 8 7 12 12 C 1.52998 * 109.47172 * 270.30611 * 11 10 8 13 13 C 1.53002 * 109.47168 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47184 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00005 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99901 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00202 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99898 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47480 * 59.99666 * 18 16 14 20 20 H 1.48507 * 109.47127 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47168 * 299.99446 * 18 16 14 22 22 C 1.34771 * 111.64603 * 0.41435 * 10 8 7 23 23 O 1.21225 * 127.16028 * 179.79499 * 22 10 8 24 24 H 1.09003 * 109.47307 * 299.99992 * 1 2 3 25 25 H 1.09001 * 109.47281 * 60.00023 * 1 2 3 26 26 H 1.08998 * 109.47258 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.00095 * 179.97438 * 2 1 3 28 28 H 1.07998 * 119.99789 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47224 * 5.00101 * 4 3 2 30 30 H 1.09008 * 109.47085 * 245.00354 * 4 3 2 31 31 H 0.97001 * 126.68790 * 61.42942 * 7 5 4 32 32 H 1.09000 * 109.46960 * 30.30810 * 11 10 8 33 33 H 1.08998 * 109.46918 * 150.30893 * 11 10 8 34 34 H 1.09000 * 109.47340 * 299.99965 * 12 11 10 35 35 H 1.09003 * 109.47405 * 60.00146 * 12 11 10 36 36 H 1.09000 * 109.47014 * 300.00229 * 13 12 11 37 37 H 1.08995 * 109.47315 * 60.00113 * 13 12 11 38 38 H 0.96995 * 120.00287 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 -0.0006 5 6 1.8696 3.2953 1.1810 6 1 2.9479 3.4496 1.1434 7 7 1.4796 2.6704 2.4568 8 6 0.6509 3.5342 3.0707 9 8 0.1381 3.3254 4.1527 10 7 0.4569 4.6502 2.3588 11 6 -0.3953 5.7621 2.7873 12 6 -1.8233 5.5317 2.2886 13 6 -2.7135 6.6926 2.7367 14 6 -4.1202 6.4653 2.2461 15 1 -4.3556 5.5815 1.6718 16 6 -5.1064 7.3863 2.5295 17 7 -4.8196 8.4627 3.2284 18 14 -6.8501 7.1042 1.9220 19 1 -7.3720 5.8342 2.4875 20 1 -7.7142 8.2311 2.3568 21 1 -6.8507 7.0230 0.4392 22 6 1.1377 4.6226 1.1960 23 8 1.1605 5.4811 0.3403 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 2.0469 -0.9353 0.0004 28 1 3.2419 1.1345 -0.0004 29 1 0.3402 2.2424 0.0886 30 1 1.6032 2.9712 -0.9321 31 1 1.7619 1.8034 2.7876 32 1 -0.3956 5.8211 3.8757 33 1 -0.0118 6.6944 2.3728 34 1 -1.8231 5.4726 1.2002 35 1 -2.2069 4.5993 2.7030 36 1 -2.7137 6.7512 3.8251 37 1 -2.3302 7.6251 2.3227 38 1 -5.5134 9.1104 3.4281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431406394.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:55 Heat of formation + Delta-G solvation = -68.407590 kcal Electronic energy + Delta-G solvation = -20129.218771 eV Core-core repulsion = 16971.434284 eV Total energy + Delta-G solvation = -3157.784488 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.47678 -39.70248 -38.07197 -37.13553 -36.32763 -35.13859 -33.18833 -31.20741 -29.14528 -27.82920 -25.86769 -25.19108 -23.36859 -22.53106 -21.36296 -19.42898 -19.11946 -18.48199 -17.86123 -17.65445 -16.72998 -16.65575 -16.35833 -16.15681 -15.74587 -15.37137 -15.08198 -14.73518 -14.42232 -14.14211 -14.07990 -13.74922 -13.33704 -12.96959 -12.72192 -12.69750 -12.59468 -12.52860 -12.10829 -11.80236 -11.70377 -11.58872 -11.40961 -11.19212 -10.80412 -10.57531 -10.49647 -9.83293 -8.22209 -6.33656 0.53753 1.13669 1.38453 1.39794 1.42075 1.50095 1.93661 2.18189 2.39897 2.92747 3.10952 3.67888 3.79741 3.98748 4.10718 4.11678 4.29286 4.33089 4.42184 4.43286 4.54019 4.59104 4.79597 4.80688 4.91773 4.99557 5.05861 5.12818 5.25919 5.43967 5.63240 5.77716 5.78748 5.82389 5.96119 6.07117 6.19474 6.35460 6.80602 7.09480 7.35152 8.89583 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.021885 B = 0.004281 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.090732 B = 6538.402652 C = 7003.346085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.152 4.152 3 C -0.161 4.161 4 C -0.096 4.096 5 C 0.115 3.885 6 H 0.170 0.830 7 N -0.698 5.698 8 C 0.697 3.303 9 O -0.583 6.583 10 N -0.579 5.579 11 C 0.124 3.876 12 C -0.104 4.104 13 C 0.029 3.971 14 C -0.548 4.548 15 H 0.056 0.944 16 C 0.002 3.998 17 N -0.930 5.930 18 Si 0.966 3.034 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.266 1.266 22 C 0.516 3.484 23 O -0.495 6.495 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.128 0.872 28 H 0.141 0.859 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.451 0.549 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.046 0.954 36 H -0.002 1.002 37 H 0.001 0.999 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.156 -16.916 -7.053 25.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.170 4.170 3 C -0.179 4.179 4 C -0.134 4.134 5 C 0.008 3.992 6 H 0.187 0.813 7 N -0.364 5.364 8 C 0.397 3.603 9 O -0.459 6.459 10 N -0.324 5.324 11 C 0.003 3.997 12 C -0.143 4.143 13 C -0.009 4.009 14 C -0.585 4.585 15 H 0.074 0.926 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.790 3.210 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.191 1.191 22 C 0.305 3.695 23 O -0.366 6.366 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.146 0.854 28 H 0.159 0.841 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.299 0.701 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.017 0.983 37 H 0.020 0.980 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.785 -16.316 -6.857 25.090 hybrid contribution -1.125 0.029 0.161 1.137 sum 16.660 -16.287 -6.696 24.241 Atomic orbital electron populations 1.20951 0.94440 1.02540 1.01431 1.23013 0.95661 0.98822 0.99520 1.22715 1.00601 0.91999 1.02591 1.20981 1.00742 0.95193 0.96461 1.22194 1.03203 0.88042 0.85807 0.81302 1.45426 1.49185 1.21531 1.20246 1.16060 0.80018 0.80726 0.83451 1.90999 1.54955 1.78409 1.21538 1.46593 1.45135 1.19375 1.21275 1.21707 0.89416 0.87217 1.01327 1.21688 0.93316 0.99541 0.99727 1.18898 0.93708 0.92954 0.95291 1.21578 0.95351 1.06963 1.34653 0.92572 1.25957 1.03778 0.94703 0.95147 1.70071 1.35214 1.11648 1.40077 0.85496 0.78545 0.77967 0.79022 1.19319 1.20458 1.19133 1.21558 0.78437 0.89465 0.80033 1.90798 1.62220 1.43775 1.39790 0.92738 0.92019 0.91486 0.85374 0.84135 0.91378 0.87632 0.70144 0.89222 0.88590 0.93150 0.93522 0.98325 0.98042 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.65 71.23 0.62 -1.27 16 2 C -0.15 -1.56 10.26 25.64 0.26 -1.30 16 3 C -0.16 -1.44 9.32 25.64 0.24 -1.20 16 4 C -0.10 -1.28 5.23 29.85 0.16 -1.13 16 5 C 0.12 1.74 3.67 44.37 0.16 1.91 16 6 H 0.17 1.28 8.14 -2.39 -0.02 1.26 16 7 N -0.70 -12.25 6.03 -459.60 -2.77 -15.03 16 8 C 0.70 20.28 8.62 179.44 1.55 21.83 16 9 O -0.58 -21.98 17.49 -3.85 -0.07 -22.05 16 10 N -0.58 -17.78 2.60 -773.13 -2.01 -19.79 16 11 C 0.12 4.58 5.70 86.38 0.49 5.07 16 12 C -0.10 -4.62 5.48 30.59 0.17 -4.45 16 13 C 0.03 1.59 4.97 29.85 0.15 1.74 16 14 C -0.55 -32.34 9.11 25.60 0.23 -32.10 16 15 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 16 C 0.00 0.14 5.46 84.66 0.46 0.60 16 17 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 18 Si 0.97 45.29 29.54 68.60 2.03 47.31 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 C 0.52 13.55 7.65 87.94 0.67 14.23 16 23 O -0.49 -15.94 17.76 -2.86 -0.05 -15.99 16 24 H 0.05 0.91 7.66 -2.39 -0.02 0.89 16 25 H 0.06 0.91 7.85 -2.39 -0.02 0.89 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.13 0.91 8.06 -2.91 -0.02 0.89 16 28 H 0.14 0.60 8.06 -2.91 -0.02 0.57 16 29 H 0.07 1.20 5.79 -2.39 -0.01 1.18 16 30 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.45 5.54 8.96 -92.71 -0.83 4.70 16 32 H 0.09 3.35 7.87 -2.39 -0.02 3.33 16 33 H 0.10 3.42 8.00 -2.39 -0.02 3.40 16 34 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.00 -0.10 8.14 -2.39 -0.02 -0.11 16 37 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -75.07 327.44 2.79 -72.28 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 0.23 Total: 6.62 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 5.16 Total: 3.93 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -4.50 Total: -92.09 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -0.12 Total: -38.04 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -75.07 2.79 -72.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431406394.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.870 kcal (2) G-P(sol) polarization free energy of solvation -75.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds