Wall clock time and date at job start Mon Mar 30 2020 04:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46725 * 289.58519 * 3 2 1 5 5 N 1.46503 * 109.46733 * 184.89800 * 4 3 2 6 6 C 1.46495 * 119.99925 * 265.11752 * 5 4 3 7 7 C 1.50705 * 109.47229 * 298.51728 * 6 5 4 8 8 H 1.07996 * 119.99891 * 1.96247 * 7 6 5 9 9 C 1.37878 * 119.99770 * 181.95883 * 7 6 5 10 10 N 1.31515 * 119.99441 * 179.97438 * 9 7 6 11 11 Si 1.86789 * 120.00324 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47673 * 89.99723 * 11 9 7 13 13 H 1.48503 * 109.47151 * 210.00160 * 11 9 7 14 14 H 1.48504 * 109.47343 * 329.99794 * 11 9 7 15 15 C 1.34775 * 119.99662 * 85.11644 * 5 4 3 16 16 O 1.21280 * 120.00117 * 7.30082 * 15 5 4 17 17 C 1.50707 * 119.99788 * 187.29215 * 15 5 4 18 18 H 1.09002 * 109.46779 * 20.03655 * 17 15 5 19 19 O 1.42904 * 109.46642 * 140.02916 * 17 15 5 20 20 C 1.52997 * 109.47487 * 260.03249 * 17 15 5 21 21 C 1.53775 * 113.61460 * 186.78905 * 20 17 15 22 22 C 1.53783 * 87.07817 * 219.93519 * 21 20 17 23 23 C 1.53770 * 87.17701 * 25.39028 * 22 21 20 24 24 H 1.09000 * 109.46623 * 169.59169 * 3 2 1 25 25 H 1.08994 * 109.47188 * 49.58449 * 3 2 1 26 26 H 1.08995 * 109.46967 * 64.90246 * 4 3 2 27 27 H 1.08999 * 109.47416 * 304.90130 * 4 3 2 28 28 H 1.08992 * 109.47429 * 58.52100 * 6 5 4 29 29 H 1.09011 * 109.46840 * 178.51901 * 6 5 4 30 30 H 0.96999 * 119.99783 * 179.97438 * 10 9 7 31 31 H 0.96698 * 113.99853 * 60.00531 * 19 17 15 32 32 H 1.09004 * 112.84994 * 317.98372 * 20 17 15 33 33 H 1.08997 * 113.61932 * 105.38499 * 21 20 17 34 34 H 1.09004 * 113.61533 * 334.47719 * 21 20 17 35 35 H 1.09004 * 113.61662 * 139.98102 * 22 21 20 36 36 H 1.09006 * 113.61438 * 270.79294 * 22 21 20 37 37 H 1.09001 * 113.61753 * 89.15683 * 23 22 21 38 38 H 1.08997 * 113.61661 * 220.06453 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1182 -0.4827 1.3591 5 7 4.5784 -0.3715 1.4002 6 6 5.4109 -1.5295 1.0654 7 6 5.1313 -2.6470 2.0370 8 1 4.3833 -2.5198 2.8055 9 6 5.8303 -3.8318 1.9447 10 7 5.5866 -4.8069 2.7929 11 14 7.1245 -4.0516 0.6158 12 1 8.4431 -3.6017 1.1296 13 1 7.2045 -5.4847 0.2349 14 1 6.7549 -3.2432 -0.5738 15 6 5.1558 0.7962 1.7461 16 8 4.4735 1.7138 2.1504 17 6 6.6493 0.9616 1.6307 18 1 7.0457 0.2135 0.9441 19 8 6.9468 2.2684 1.1347 20 6 7.2905 0.7805 3.0079 21 6 8.7961 1.0923 3.0323 22 6 8.9524 -0.1213 3.9637 23 6 7.6664 -0.6773 3.3299 24 1 2.9709 1.0116 -0.1857 25 1 2.9717 -0.6654 -0.7824 26 1 2.8288 -1.5231 1.5067 27 1 2.6847 0.1306 2.1490 28 1 5.1808 -1.8619 0.0532 29 1 6.4629 -1.2502 1.1257 30 1 6.0781 -5.6405 2.7278 31 1 6.6229 2.9855 1.6968 32 1 6.7301 1.2714 3.8036 33 1 9.0377 2.0424 3.5087 34 1 9.2838 0.9664 2.0656 35 1 9.8376 -0.7218 3.7538 36 1 8.8478 0.1233 5.0208 37 1 7.8446 -1.2879 2.4447 38 1 6.9972 -1.1537 4.0463 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449798545.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:37 Heat of formation + Delta-G solvation = -39.902571 kcal Electronic energy + Delta-G solvation = -20982.001718 eV Core-core repulsion = 17825.453301 eV Total energy + Delta-G solvation = -3156.548417 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.19878 -38.21284 -36.73536 -35.88467 -35.19917 -32.83045 -31.54852 -28.62268 -27.92936 -25.28322 -24.55701 -22.97220 -22.27848 -19.49075 -18.95362 -17.60221 -17.22711 -16.83265 -16.46820 -15.79570 -15.12012 -14.82488 -14.41821 -14.31127 -14.13227 -13.54568 -13.20118 -13.04781 -12.60048 -12.56458 -12.43757 -12.16437 -11.89893 -11.69745 -11.65881 -11.43033 -11.20163 -11.08162 -10.87923 -10.66319 -10.38808 -10.17957 -10.06644 -9.92339 -9.68032 -9.01882 -8.79685 -8.04085 -6.31321 -4.33647 2.77796 2.94351 2.99117 3.08718 3.16226 3.20018 3.49734 4.16581 4.29112 4.44903 4.80648 4.86517 4.93412 5.02291 5.11675 5.17920 5.29931 5.34621 5.49290 5.58608 5.62998 5.93490 5.97951 6.01419 6.08966 6.12047 6.25283 6.28860 6.45176 6.53931 6.63783 6.77109 7.01662 7.31918 7.67108 7.70386 7.84776 8.28799 8.54115 8.74033 9.26588 10.80889 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.012261 B = 0.009194 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.164809 B = 3044.738631 C = 4736.279363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.221 3.779 3 C -0.044 4.044 4 C 0.124 3.876 5 N -0.581 5.581 6 C 0.200 3.800 7 C -0.538 4.538 8 H 0.082 0.918 9 C 0.082 3.918 10 N -0.886 5.886 11 Si 0.860 3.140 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.262 1.262 15 C 0.492 3.508 16 O -0.562 6.562 17 C 0.098 3.902 18 H 0.122 0.878 19 O -0.544 6.544 20 C -0.137 4.137 21 C -0.122 4.122 22 C -0.147 4.147 23 C -0.122 4.122 24 H 0.106 0.894 25 H 0.111 0.889 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.029 0.971 29 H 0.040 0.960 30 H 0.268 0.732 31 H 0.379 0.621 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 8.521 -2.619 10.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.097 4.097 3 C -0.086 4.086 4 C -0.001 4.001 5 N -0.312 5.312 6 C 0.080 3.920 7 C -0.576 4.576 8 H 0.100 0.900 9 C -0.122 4.122 10 N -0.523 5.523 11 Si 0.687 3.313 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.187 1.187 15 C 0.279 3.721 16 O -0.442 6.442 17 C 0.036 3.964 18 H 0.140 0.860 19 O -0.349 6.349 20 C -0.157 4.157 21 C -0.159 4.159 22 C -0.184 4.184 23 C -0.160 4.160 24 H 0.124 0.876 25 H 0.129 0.871 26 H 0.121 0.879 27 H 0.098 0.902 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.228 0.772 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.497 8.440 -2.843 9.977 hybrid contribution 0.859 -0.204 -0.185 0.902 sum 5.357 8.236 -3.028 10.281 Atomic orbital electron populations 1.81180 1.13026 1.09482 1.08860 1.29039 0.95065 0.92631 0.92925 1.19741 0.81547 1.05199 1.02089 1.21173 0.81040 1.03768 0.94155 1.47905 1.06112 1.11516 1.65636 1.20073 0.90664 0.84111 0.97189 1.21155 1.23851 0.96885 1.15755 0.90029 1.24800 0.96497 0.95565 0.95386 1.69867 1.41225 1.05161 1.36007 0.87102 0.82800 0.78447 0.82992 1.19550 1.20797 1.18664 1.21447 0.91275 0.82442 0.76912 1.90627 1.65270 1.41167 1.47155 1.22084 0.90761 0.86431 0.97075 0.86026 1.86563 1.80762 1.14688 1.52896 1.23189 0.96434 0.99855 0.96184 1.22779 0.94839 0.98107 1.00178 1.22857 0.98869 0.97727 0.98978 1.22942 0.96757 0.94233 1.02021 0.87563 0.87078 0.87939 0.90190 0.95324 0.94202 0.92232 0.77240 0.88847 0.91789 0.89885 0.91616 0.90532 0.89350 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.61 18.54 42.16 0.78 -6.83 16 2 C 0.22 3.24 15.43 -20.76 -0.32 2.92 16 3 C -0.04 -0.57 5.99 -29.52 -0.18 -0.75 16 4 C 0.12 1.97 5.15 -4.04 -0.02 1.95 16 5 N -0.58 -10.13 2.61 -175.05 -0.46 -10.59 16 6 C 0.20 3.80 4.34 -5.19 -0.02 3.78 16 7 C -0.54 -12.50 9.11 -34.44 -0.31 -12.82 16 8 H 0.08 2.14 7.69 -52.49 -0.40 1.74 16 9 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 10 N -0.89 -23.93 13.96 55.43 0.77 -23.15 16 11 Si 0.86 18.04 27.43 -169.99 -4.66 13.37 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 14 H -0.26 -5.13 6.60 56.52 0.37 -4.76 16 15 C 0.49 8.52 6.72 -10.98 -0.07 8.45 16 16 O -0.56 -10.76 16.22 -10.16 -0.16 -10.92 16 17 C 0.10 1.50 2.74 -27.88 -0.08 1.42 16 18 H 0.12 1.86 5.58 -51.93 -0.29 1.57 16 19 O -0.54 -7.75 12.91 -50.95 -0.66 -8.40 16 20 C -0.14 -1.98 3.37 -89.72 -0.30 -2.28 16 21 C -0.12 -1.50 7.29 -25.92 -0.19 -1.69 16 22 C -0.15 -1.90 8.07 -25.92 -0.21 -2.11 16 23 C -0.12 -1.93 7.09 -25.83 -0.18 -2.11 16 24 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.10 1.73 7.17 -51.93 -0.37 1.35 16 27 H 0.08 1.33 7.48 -51.93 -0.39 0.94 16 28 H 0.03 0.54 7.34 -51.93 -0.38 0.15 16 29 H 0.04 0.73 2.61 -51.92 -0.14 0.60 16 30 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.38 4.59 8.68 45.56 0.40 4.99 16 32 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.50 6.50 -51.93 -0.34 1.16 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 319.68 15.07 4.82 4.82 Total: -1.00 -28.10 319.68 -6.01 -34.11 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -4.45 Total: 8.91 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.99 Total: -1.32 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 1.10 Total: -40.57 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.82 Total: -19.32 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -4.66 Total: 13.37 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.10 -6.01 -34.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449798545.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.789 kcal (2) G-P(sol) polarization free energy of solvation -28.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds