Wall clock time and date at job start Mon Mar 30 2020 04:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46725 * 289.58519 * 3 2 1 5 5 N 1.46503 * 109.46733 * 184.89800 * 4 3 2 6 6 C 1.46495 * 119.99925 * 265.11752 * 5 4 3 7 7 C 1.50705 * 109.47229 * 298.51728 * 6 5 4 8 8 H 1.07996 * 119.99891 * 1.96247 * 7 6 5 9 9 C 1.37878 * 119.99770 * 181.95883 * 7 6 5 10 10 N 1.31515 * 119.99441 * 179.97438 * 9 7 6 11 11 Si 1.86789 * 120.00324 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47673 * 89.99723 * 11 9 7 13 13 H 1.48503 * 109.47151 * 210.00160 * 11 9 7 14 14 H 1.48504 * 109.47343 * 329.99794 * 11 9 7 15 15 C 1.34775 * 119.99662 * 85.11644 * 5 4 3 16 16 O 1.21280 * 120.00117 * 7.30082 * 15 5 4 17 17 C 1.50707 * 119.99788 * 187.29215 * 15 5 4 18 18 H 1.09002 * 109.46779 * 20.03655 * 17 15 5 19 19 O 1.42904 * 109.46642 * 140.02916 * 17 15 5 20 20 C 1.52997 * 109.47487 * 260.03249 * 17 15 5 21 21 C 1.53775 * 113.61460 * 186.78905 * 20 17 15 22 22 C 1.53783 * 87.07817 * 219.93519 * 21 20 17 23 23 C 1.53770 * 87.17701 * 25.39028 * 22 21 20 24 24 H 1.09000 * 109.46623 * 169.59169 * 3 2 1 25 25 H 1.08994 * 109.47188 * 49.58449 * 3 2 1 26 26 H 1.08995 * 109.46967 * 64.90246 * 4 3 2 27 27 H 1.08999 * 109.47416 * 304.90130 * 4 3 2 28 28 H 1.08992 * 109.47429 * 58.52100 * 6 5 4 29 29 H 1.09011 * 109.46840 * 178.51901 * 6 5 4 30 30 H 0.96999 * 119.99783 * 179.97438 * 10 9 7 31 31 H 0.96698 * 113.99853 * 60.00531 * 19 17 15 32 32 H 1.09004 * 112.84994 * 317.98372 * 20 17 15 33 33 H 1.08997 * 113.61932 * 105.38499 * 21 20 17 34 34 H 1.09004 * 113.61533 * 334.47719 * 21 20 17 35 35 H 1.09004 * 113.61662 * 139.98102 * 22 21 20 36 36 H 1.09006 * 113.61438 * 270.79294 * 22 21 20 37 37 H 1.09001 * 113.61753 * 89.15683 * 23 22 21 38 38 H 1.08997 * 113.61661 * 220.06453 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1182 -0.4827 1.3591 5 7 4.5784 -0.3715 1.4002 6 6 5.4109 -1.5295 1.0654 7 6 5.1313 -2.6470 2.0370 8 1 4.3833 -2.5198 2.8055 9 6 5.8303 -3.8318 1.9447 10 7 5.5866 -4.8069 2.7929 11 14 7.1245 -4.0516 0.6158 12 1 8.4431 -3.6017 1.1296 13 1 7.2045 -5.4847 0.2349 14 1 6.7549 -3.2432 -0.5738 15 6 5.1558 0.7962 1.7461 16 8 4.4735 1.7138 2.1504 17 6 6.6493 0.9616 1.6307 18 1 7.0457 0.2135 0.9441 19 8 6.9468 2.2684 1.1347 20 6 7.2905 0.7805 3.0079 21 6 8.7961 1.0923 3.0323 22 6 8.9524 -0.1213 3.9637 23 6 7.6664 -0.6773 3.3299 24 1 2.9709 1.0116 -0.1857 25 1 2.9717 -0.6654 -0.7824 26 1 2.8288 -1.5231 1.5067 27 1 2.6847 0.1306 2.1490 28 1 5.1808 -1.8619 0.0532 29 1 6.4629 -1.2502 1.1257 30 1 6.0781 -5.6405 2.7278 31 1 6.6229 2.9855 1.6968 32 1 6.7301 1.2714 3.8036 33 1 9.0377 2.0424 3.5087 34 1 9.2838 0.9664 2.0656 35 1 9.8376 -0.7218 3.7538 36 1 8.8478 0.1233 5.0208 37 1 7.8446 -1.2879 2.4447 38 1 6.9972 -1.1537 4.0463 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449798545.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:37 Heat of formation + Delta-G solvation = -57.695436 kcal Electronic energy + Delta-G solvation = -20982.773275 eV Core-core repulsion = 17825.453301 eV Total energy + Delta-G solvation = -3157.319974 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50890 -39.42847 -38.00743 -37.15378 -36.53904 -34.59901 -32.90239 -29.98255 -29.43518 -26.41382 -25.78928 -24.54098 -23.61942 -20.65191 -20.27496 -19.09173 -18.64500 -18.26312 -17.75477 -17.12563 -16.33230 -16.08692 -16.00381 -15.62570 -15.38737 -14.83093 -14.62094 -14.29962 -14.15665 -13.97595 -13.70369 -13.46189 -13.22518 -13.00347 -12.81870 -12.70159 -12.63601 -12.46852 -12.27653 -11.99821 -11.83793 -11.62459 -11.32228 -11.21404 -11.08444 -10.68413 -10.29384 -9.51781 -8.21247 -6.27085 1.44830 1.47952 1.49132 1.55137 1.68368 1.75423 2.17091 2.41023 3.10371 3.15093 3.30905 3.55273 3.73274 3.78650 3.96781 4.06015 4.10584 4.15978 4.33661 4.45525 4.51552 4.66234 4.83720 4.90886 4.95616 4.96491 4.98777 5.05572 5.15425 5.27153 5.38625 5.45754 5.63708 5.65362 6.16509 6.51668 6.59934 6.67169 6.77909 7.14988 7.38087 8.94623 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.012261 B = 0.009194 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.164809 B = 3044.738631 C = 4736.279363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.243 3.757 3 C -0.029 4.029 4 C 0.122 3.878 5 N -0.584 5.584 6 C 0.206 3.794 7 C -0.526 4.526 8 H 0.036 0.964 9 C 0.027 3.973 10 N -0.942 5.942 11 Si 0.918 3.082 12 H -0.258 1.258 13 H -0.294 1.294 14 H -0.229 1.229 15 C 0.489 3.511 16 O -0.581 6.581 17 C 0.106 3.894 18 H 0.127 0.873 19 O -0.541 6.541 20 C -0.136 4.136 21 C -0.106 4.106 22 C -0.140 4.140 23 C -0.133 4.133 24 H 0.121 0.879 25 H 0.138 0.862 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.265 0.735 31 H 0.390 0.610 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.315 10.124 -4.541 13.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.074 4.074 3 C -0.070 4.070 4 C -0.003 4.003 5 N -0.314 5.314 6 C 0.085 3.915 7 C -0.564 4.564 8 H 0.055 0.945 9 C -0.172 4.172 10 N -0.582 5.582 11 Si 0.741 3.259 12 H -0.183 1.183 13 H -0.221 1.221 14 H -0.151 1.151 15 C 0.277 3.723 16 O -0.463 6.463 17 C 0.044 3.956 18 H 0.144 0.856 19 O -0.347 6.347 20 C -0.155 4.155 21 C -0.143 4.143 22 C -0.177 4.177 23 C -0.171 4.171 24 H 0.139 0.861 25 H 0.156 0.844 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.239 0.761 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.595 10.088 -4.775 12.964 hybrid contribution 0.126 -0.675 0.532 0.869 sum 6.722 9.413 -4.243 12.320 Atomic orbital electron populations 1.81205 1.14359 1.11032 1.10179 1.29263 0.95188 0.91281 0.91652 1.19703 0.80083 1.06516 1.00667 1.21135 0.80599 1.02756 0.95825 1.47899 1.06459 1.11290 1.65776 1.19949 0.91808 0.83156 0.96593 1.21282 1.21901 0.98196 1.15066 0.94530 1.25606 0.98826 0.95153 0.97631 1.70040 1.43339 1.06007 1.38818 0.86165 0.80425 0.78123 0.81215 1.18256 1.22085 1.15143 1.21930 0.92301 0.81925 0.76113 1.90618 1.66024 1.41746 1.47905 1.22018 0.88887 0.87234 0.97503 0.85571 1.86550 1.80583 1.14464 1.53150 1.23176 0.98098 0.98683 0.95577 1.22725 0.92488 0.98616 1.00477 1.22853 0.97450 0.97867 0.99562 1.22918 0.98157 0.94813 1.01194 0.86100 0.84384 0.89502 0.91461 0.93362 0.92520 0.92578 0.76067 0.89546 0.89831 0.89060 0.90668 0.89767 0.90339 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.41 18.54 20.01 0.37 -16.04 16 2 C 0.24 6.84 15.43 89.44 1.38 8.22 16 3 C -0.03 -0.68 5.99 28.79 0.17 -0.51 16 4 C 0.12 3.82 5.15 86.38 0.45 4.27 16 5 N -0.58 -19.67 2.61 -826.14 -2.15 -21.82 16 6 C 0.21 7.47 4.34 85.64 0.37 7.84 16 7 C -0.53 -24.77 9.11 25.60 0.23 -24.54 16 8 H 0.04 2.02 7.69 -2.91 -0.02 1.99 16 9 C 0.03 1.33 5.47 84.65 0.46 1.79 16 10 N -0.94 -52.74 13.96 21.45 0.30 -52.44 16 11 Si 0.92 35.94 27.43 68.60 1.88 37.82 16 12 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 13 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 14 H -0.23 -7.69 6.60 99.48 0.66 -7.04 16 15 C 0.49 16.17 6.72 87.66 0.59 16.76 16 16 O -0.58 -21.53 16.22 12.00 0.19 -21.34 16 17 C 0.11 2.95 2.74 29.85 0.08 3.03 16 18 H 0.13 3.43 5.58 -2.39 -0.01 3.42 16 19 O -0.54 -13.61 12.91 -133.95 -1.73 -15.34 16 20 C -0.14 -3.66 3.37 -10.21 -0.03 -3.69 16 21 C -0.11 -2.25 7.29 31.12 0.23 -2.02 16 22 C -0.14 -3.31 8.07 31.12 0.25 -3.06 16 23 C -0.13 -4.10 7.09 31.18 0.22 -3.87 16 24 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 25 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.09 2.98 7.17 -2.39 -0.02 2.97 16 27 H 0.07 2.27 7.48 -2.39 -0.02 2.25 16 28 H 0.05 1.62 7.34 -2.39 -0.02 1.60 16 29 H 0.06 1.92 2.61 -2.38 -0.01 1.91 16 30 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 31 H 0.39 8.26 8.68 -74.06 -0.64 7.61 16 32 H 0.09 2.45 8.11 -2.38 -0.02 2.43 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.85 8.10 -2.38 -0.02 1.83 16 35 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.08 2.55 6.50 -2.39 -0.02 2.53 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -62.17 319.68 3.66 -58.51 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.39 Total: 26.42 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 4.40 Total: 4.22 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -1.48 Total: -90.30 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -1.53 Total: -36.68 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 1.88 Total: 37.82 kcal Total: -62.17 3.66 -58.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449798545.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.818 kcal (2) G-P(sol) polarization free energy of solvation -62.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds