Wall clock time and date at job start Mon Mar 30 2020 05:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47256 * 2 1 4 4 N 1.29938 * 125.37689 * 89.99994 * 3 2 1 5 5 C 1.36073 * 108.47878 * 179.97438 * 4 3 2 6 6 C 1.47415 * 126.44682 * 180.02562 * 5 4 3 7 7 O 1.21615 * 119.99773 * 185.92874 * 6 5 4 8 8 N 1.34777 * 120.00381 * 5.93032 * 6 5 4 9 9 C 1.46502 * 119.99862 * 184.85174 * 8 6 5 10 10 C 1.52999 * 109.47090 * 268.08092 * 9 8 6 11 11 C 1.46499 * 119.99928 * 5.12854 * 8 6 5 12 12 C 1.50703 * 109.47002 * 274.26936 * 11 8 6 13 13 H 1.08003 * 119.99813 * 359.97438 * 12 11 8 14 14 C 1.37872 * 119.99914 * 180.02562 * 12 11 8 15 15 N 1.31515 * 120.00314 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00109 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.46988 * 89.99801 * 16 14 12 18 18 H 1.48494 * 109.47380 * 209.99813 * 16 14 12 19 19 H 1.48500 * 109.47075 * 330.00502 * 16 14 12 20 20 C 1.36092 * 107.10050 * 0.25960 * 5 4 3 21 21 C 1.50692 * 126.52380 * 179.73907 * 20 5 4 22 22 O 1.34046 * 125.38259 * 269.96182 * 3 2 1 23 23 H 1.09003 * 109.47038 * 300.00268 * 1 2 3 24 24 H 1.09007 * 109.47173 * 59.99465 * 1 2 3 25 25 H 1.08998 * 109.47275 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47246 * 240.00231 * 2 1 3 27 27 H 1.08994 * 109.47169 * 120.00263 * 2 1 3 28 28 H 1.08997 * 109.46835 * 28.08597 * 9 8 6 29 29 H 1.08996 * 109.46480 * 148.08368 * 9 8 6 30 30 H 1.09003 * 109.47082 * 180.02562 * 10 9 8 31 31 H 1.08999 * 109.47623 * 300.00521 * 10 9 8 32 32 H 1.09002 * 109.47074 * 60.00357 * 10 9 8 33 33 H 1.09001 * 109.47059 * 34.26745 * 11 8 6 34 34 H 1.08992 * 109.47621 * 154.26840 * 11 8 6 35 35 H 0.96995 * 120.00393 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47539 * 90.00285 * 21 20 5 37 37 H 1.09008 * 109.47234 * 210.00169 * 21 20 5 38 38 H 1.09002 * 109.47321 * 330.00496 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2831 2.1300 1.0595 5 6 2.7177 3.3573 0.6639 6 6 3.1126 4.4721 1.5440 7 8 3.3816 5.5578 1.0666 8 7 3.1756 4.2881 2.8777 9 6 3.4640 5.4211 3.7606 10 6 4.9724 5.5089 4.0014 11 6 2.9617 2.9540 3.4440 12 6 1.4858 2.7236 3.6432 13 1 0.7780 3.4941 3.3751 14 6 1.0392 1.5297 4.1685 15 7 1.9012 0.5917 4.4954 16 14 -0.7902 1.2443 4.4161 17 1 -1.3664 0.6348 3.1906 18 1 -0.9972 0.3302 5.5679 19 1 -1.4613 2.5411 4.6864 20 6 2.7141 3.3637 -0.6970 21 6 3.1121 4.5108 -1.5895 22 8 2.2918 2.1523 -1.0929 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.1161 6.3428 3.2942 29 1 2.9518 5.2796 4.7122 30 1 5.1869 6.3517 4.6586 31 1 5.3203 4.5872 4.4676 32 1 5.4846 5.6504 3.0497 33 1 3.3581 2.2019 2.7618 34 1 3.4737 2.8802 4.4033 35 1 1.5870 -0.2484 4.8647 36 1 4.1779 4.4476 -1.8090 37 1 2.5460 4.4608 -2.5198 38 1 2.9003 5.4538 -1.0855 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000507438915.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:10 Heat of formation + Delta-G solvation = -14.984628 kcal Electronic energy + Delta-G solvation = -21326.661582 eV Core-core repulsion = 18171.193687 eV Total energy + Delta-G solvation = -3155.467894 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.77480 -38.85938 -35.26153 -34.33651 -33.60976 -32.50006 -31.18451 -30.32674 -27.04292 -26.47273 -24.23138 -23.02175 -22.78800 -21.60183 -20.31739 -18.51484 -16.76352 -16.51100 -16.00816 -15.53181 -15.27013 -14.33919 -14.26321 -14.14403 -13.91653 -13.40698 -13.02858 -12.83097 -12.68907 -12.32311 -12.22699 -12.10382 -11.86226 -11.54071 -11.43568 -11.32226 -10.96988 -10.83292 -10.64003 -10.43981 -10.35738 -10.04033 -9.60839 -9.40312 -9.07647 -8.28465 -8.20181 -7.58124 -5.92404 -3.91027 1.68260 2.82267 3.04543 3.31187 3.38067 3.42461 3.91312 4.09027 4.48468 4.56930 5.10818 5.32552 5.33981 5.43506 5.49502 5.62676 5.63512 5.67427 5.75330 5.84267 5.91781 5.96194 6.03301 6.23628 6.27797 6.39347 6.43357 6.46401 6.51255 6.67398 6.76935 6.92522 7.53982 7.76530 7.98274 8.28243 8.35856 8.43296 8.96945 9.09872 9.68953 11.16562 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.010888 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.446600 B = 2571.023907 C = 4230.475694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.017 4.017 3 C 0.163 3.837 4 N -0.375 5.375 5 C -0.055 4.055 6 C 0.596 3.404 7 O -0.574 6.574 8 N -0.579 5.579 9 C 0.115 3.885 10 C -0.163 4.163 11 C 0.237 3.763 12 C -0.492 4.492 13 H 0.049 0.951 14 C 0.071 3.929 15 N -0.893 5.893 16 Si 0.882 3.118 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.006 3.994 21 C -0.067 4.067 22 O -0.209 6.209 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.258 0.742 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.662 1.536 -8.517 8.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.055 4.055 3 C -0.046 4.046 4 N -0.102 5.102 5 C -0.176 4.176 6 C 0.384 3.616 7 O -0.457 6.457 8 N -0.307 5.307 9 C -0.008 4.008 10 C -0.221 4.221 11 C 0.118 3.882 12 C -0.531 4.531 13 H 0.067 0.933 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.710 3.290 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.050 4.050 21 C -0.123 4.123 22 O -0.098 6.098 23 H 0.088 0.912 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.128 0.872 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.732 1.669 -8.001 8.355 hybrid contribution -1.111 -0.225 -0.369 1.192 sum 0.622 1.444 -8.370 8.517 Atomic orbital electron populations 1.21783 0.93743 1.02319 1.02939 1.19937 0.96457 0.84561 1.04589 1.26503 1.02443 0.97226 0.78382 1.71721 1.10763 1.01191 1.26560 1.21566 1.09423 0.95188 0.91422 1.16796 0.77296 0.85235 0.82240 1.90641 1.53496 1.25884 1.75649 1.48184 1.65807 1.12143 1.04612 1.21292 0.95259 0.89730 0.94537 1.22107 0.97089 1.01476 1.01439 1.19717 0.97246 0.76826 0.94428 1.21156 0.91587 1.00255 1.40129 0.93284 1.24688 0.96683 0.95790 0.95814 1.69920 1.33198 1.06074 1.44169 0.86780 0.86664 0.77933 0.77591 1.20646 1.21445 1.20336 1.23500 1.00882 0.85892 0.94752 1.20432 1.01644 0.92973 0.97281 1.84223 1.64653 1.22092 1.38801 0.91154 0.92829 0.91564 0.89959 0.87198 0.91055 0.90389 0.92387 0.92510 0.92773 0.92017 0.95482 0.93221 0.90034 0.91062 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.89 37.16 0.37 -1.85 16 2 C -0.02 -0.27 6.56 -27.88 -0.18 -0.45 16 3 C 0.16 3.16 7.56 -13.08 -0.10 3.06 16 4 N -0.38 -8.57 6.93 -7.66 -0.05 -8.62 16 5 C -0.06 -1.21 6.56 -83.02 -0.54 -1.76 16 6 C 0.60 13.56 7.62 -12.52 -0.10 13.47 16 7 O -0.57 -12.90 14.38 5.26 0.08 -12.82 16 8 N -0.58 -13.13 2.47 -176.34 -0.43 -13.57 16 9 C 0.12 2.20 6.09 -4.04 -0.02 2.18 16 10 C -0.16 -2.67 10.24 37.16 0.38 -2.29 16 11 C 0.24 6.00 4.75 -5.19 -0.02 5.98 16 12 C -0.49 -13.33 7.81 -34.44 -0.27 -13.60 16 13 H 0.05 1.39 7.81 -52.48 -0.41 0.98 16 14 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 15 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 16 Si 0.88 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 C 0.01 0.11 7.44 -35.08 -0.26 -0.15 16 21 C -0.07 -0.96 9.94 36.00 0.36 -0.60 16 22 O -0.21 -3.82 10.73 6.51 0.07 -3.75 16 23 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 24 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 28 H 0.07 1.34 7.43 -51.93 -0.39 0.95 16 29 H 0.08 1.46 8.09 -51.93 -0.42 1.04 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.67 5.80 -51.93 -0.30 1.37 16 34 H 0.03 0.72 8.04 -51.93 -0.42 0.30 16 35 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 38 H 0.11 1.71 6.38 -51.93 -0.33 1.38 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -30.72 321.85 -5.90 -36.62 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.63 Total: -0.45 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -0.49 Total: 5.81 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.25 Total: -46.38 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.15 Total: -16.58 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.72 -5.90 -36.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507438915.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.633 kcal (2) G-P(sol) polarization free energy of solvation -30.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds