Wall clock time and date at job start Mon Mar 30 2020 05:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47256 * 2 1 4 4 N 1.29938 * 125.37689 * 89.99994 * 3 2 1 5 5 C 1.36073 * 108.47878 * 179.97438 * 4 3 2 6 6 C 1.47415 * 126.44682 * 180.02562 * 5 4 3 7 7 O 1.21615 * 119.99773 * 185.92874 * 6 5 4 8 8 N 1.34777 * 120.00381 * 5.93032 * 6 5 4 9 9 C 1.46502 * 119.99862 * 184.85174 * 8 6 5 10 10 C 1.52999 * 109.47090 * 268.08092 * 9 8 6 11 11 C 1.46499 * 119.99928 * 5.12854 * 8 6 5 12 12 C 1.50703 * 109.47002 * 274.26936 * 11 8 6 13 13 H 1.08003 * 119.99813 * 359.97438 * 12 11 8 14 14 C 1.37872 * 119.99914 * 180.02562 * 12 11 8 15 15 N 1.31515 * 120.00314 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00109 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.46988 * 89.99801 * 16 14 12 18 18 H 1.48494 * 109.47380 * 209.99813 * 16 14 12 19 19 H 1.48500 * 109.47075 * 330.00502 * 16 14 12 20 20 C 1.36092 * 107.10050 * 0.25960 * 5 4 3 21 21 C 1.50692 * 126.52380 * 179.73907 * 20 5 4 22 22 O 1.34046 * 125.38259 * 269.96182 * 3 2 1 23 23 H 1.09003 * 109.47038 * 300.00268 * 1 2 3 24 24 H 1.09007 * 109.47173 * 59.99465 * 1 2 3 25 25 H 1.08998 * 109.47275 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47246 * 240.00231 * 2 1 3 27 27 H 1.08994 * 109.47169 * 120.00263 * 2 1 3 28 28 H 1.08997 * 109.46835 * 28.08597 * 9 8 6 29 29 H 1.08996 * 109.46480 * 148.08368 * 9 8 6 30 30 H 1.09003 * 109.47082 * 180.02562 * 10 9 8 31 31 H 1.08999 * 109.47623 * 300.00521 * 10 9 8 32 32 H 1.09002 * 109.47074 * 60.00357 * 10 9 8 33 33 H 1.09001 * 109.47059 * 34.26745 * 11 8 6 34 34 H 1.08992 * 109.47621 * 154.26840 * 11 8 6 35 35 H 0.96995 * 120.00393 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47539 * 90.00285 * 21 20 5 37 37 H 1.09008 * 109.47234 * 210.00169 * 21 20 5 38 38 H 1.09002 * 109.47321 * 330.00496 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2831 2.1300 1.0595 5 6 2.7177 3.3573 0.6639 6 6 3.1126 4.4721 1.5440 7 8 3.3816 5.5578 1.0666 8 7 3.1756 4.2881 2.8777 9 6 3.4640 5.4211 3.7606 10 6 4.9724 5.5089 4.0014 11 6 2.9617 2.9540 3.4440 12 6 1.4858 2.7236 3.6432 13 1 0.7780 3.4941 3.3751 14 6 1.0392 1.5297 4.1685 15 7 1.9012 0.5917 4.4954 16 14 -0.7902 1.2443 4.4161 17 1 -1.3664 0.6348 3.1906 18 1 -0.9972 0.3302 5.5679 19 1 -1.4613 2.5411 4.6864 20 6 2.7141 3.3637 -0.6970 21 6 3.1121 4.5108 -1.5895 22 8 2.2918 2.1523 -1.0929 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.1161 6.3428 3.2942 29 1 2.9518 5.2796 4.7122 30 1 5.1869 6.3517 4.6586 31 1 5.3203 4.5872 4.4676 32 1 5.4846 5.6504 3.0497 33 1 3.3581 2.2019 2.7618 34 1 3.4737 2.8802 4.4033 35 1 1.5870 -0.2484 4.8647 36 1 4.1779 4.4476 -1.8090 37 1 2.5460 4.4608 -2.5198 38 1 2.9003 5.4538 -1.0855 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000507438915.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:09 Heat of formation + Delta-G solvation = -34.169915 kcal Electronic energy + Delta-G solvation = -21327.493518 eV Core-core repulsion = 18171.193687 eV Total energy + Delta-G solvation = -3156.299831 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.28111 -40.58087 -37.01879 -35.82801 -34.99549 -34.51520 -32.47903 -31.94093 -28.94906 -27.94341 -25.69773 -24.87669 -24.32631 -23.09097 -21.81004 -20.15823 -18.63660 -18.21973 -17.72899 -17.20299 -16.81678 -16.26446 -15.82522 -15.56887 -15.35113 -14.83788 -14.40600 -14.32462 -14.21739 -13.98650 -13.69677 -13.44033 -13.41333 -13.09856 -13.02883 -12.75336 -12.67387 -12.53088 -12.13879 -12.01649 -11.98683 -11.82500 -11.63209 -11.14982 -10.76044 -10.36316 -9.76097 -9.35057 -8.01743 -6.07050 0.16782 1.23199 1.39743 1.41314 1.49599 1.61401 2.25327 2.40299 2.51601 3.11441 3.31053 3.70870 3.76634 4.15277 4.18528 4.28011 4.37332 4.38274 4.44321 4.52952 4.61328 4.65093 4.81370 4.90496 4.95952 5.00534 5.04379 5.09002 5.18153 5.20580 5.27855 5.32184 5.51156 5.83025 5.91706 6.27307 6.52437 6.78193 6.96690 7.27195 7.56492 9.06416 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.010888 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.446600 B = 2571.023907 C = 4230.475694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.016 4.016 3 C 0.164 3.836 4 N -0.422 5.422 5 C -0.104 4.104 6 C 0.590 3.410 7 O -0.578 6.578 8 N -0.589 5.589 9 C 0.108 3.892 10 C -0.151 4.151 11 C 0.258 3.742 12 C -0.496 4.496 13 H 0.029 0.971 14 C 0.037 3.963 15 N -0.916 5.916 16 Si 0.933 3.067 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.283 1.283 20 C 0.027 3.973 21 C -0.064 4.064 22 O -0.199 6.199 23 H 0.029 0.971 24 H 0.067 0.933 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.010 0.990 35 H 0.261 0.739 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.247 1.314 -10.061 10.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.054 4.054 3 C -0.045 4.045 4 N -0.150 5.150 5 C -0.223 4.223 6 C 0.379 3.621 7 O -0.461 6.461 8 N -0.317 5.317 9 C -0.014 4.014 10 C -0.209 4.209 11 C 0.138 3.862 12 C -0.535 4.535 13 H 0.047 0.953 14 C -0.162 4.162 15 N -0.557 5.557 16 Si 0.760 3.240 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.030 4.030 21 C -0.120 4.120 22 O -0.087 6.087 23 H 0.048 0.952 24 H 0.086 0.914 25 H 0.114 0.886 26 H 0.142 0.858 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.323 1.468 -9.540 9.743 hybrid contribution -0.965 -0.134 0.047 0.975 sum 0.358 1.333 -9.494 9.594 Atomic orbital electron populations 1.21747 0.93019 1.03855 1.01545 1.20156 0.96915 0.82512 1.05846 1.27198 1.01183 0.98172 0.77962 1.71600 1.12546 1.02178 1.28651 1.21679 1.12414 0.95353 0.92883 1.17013 0.77089 0.85662 0.82316 1.90613 1.53888 1.25996 1.75638 1.48209 1.66290 1.11996 1.05250 1.21504 0.97274 0.88676 0.93930 1.22003 0.94662 1.02512 1.01693 1.19247 0.96003 0.77995 0.92965 1.21127 0.92018 1.00014 1.40335 0.95266 1.25233 1.00138 0.95439 0.95433 1.70004 1.34743 1.06377 1.44552 0.85968 0.82436 0.77614 0.77989 1.19543 1.20679 1.20808 1.24207 0.98033 0.86508 0.94275 1.20607 1.03411 0.90356 0.97614 1.84258 1.64361 1.21890 1.38204 0.95183 0.91436 0.88576 0.85776 0.88748 0.90707 0.90479 0.88946 0.93325 0.93500 0.93809 0.97250 0.92985 0.87883 0.87641 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.89 71.98 0.71 -3.28 16 2 C -0.02 -0.49 6.56 29.85 0.20 -0.29 16 3 C 0.16 6.26 7.56 88.39 0.67 6.93 16 4 N -0.42 -19.65 6.93 -293.04 -2.03 -21.68 16 5 C -0.10 -4.62 6.56 40.40 0.27 -4.36 16 6 C 0.59 27.32 7.62 86.66 0.66 27.98 16 7 O -0.58 -26.01 14.38 -4.08 -0.06 -26.07 16 8 N -0.59 -27.44 2.47 -830.05 -2.05 -29.48 16 9 C 0.11 4.18 6.09 86.38 0.53 4.71 16 10 C -0.15 -4.86 10.24 71.98 0.74 -4.12 16 11 C 0.26 13.57 4.75 85.63 0.41 13.98 16 12 C -0.50 -27.62 7.81 25.60 0.20 -27.42 16 13 H 0.03 1.71 7.81 -2.91 -0.02 1.69 16 14 C 0.04 2.01 5.46 84.65 0.46 2.48 16 15 N -0.92 -51.84 13.29 21.45 0.28 -51.56 16 16 Si 0.93 43.67 29.54 68.60 2.03 45.70 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 20 C 0.03 0.97 7.44 25.18 0.19 1.16 16 21 C -0.06 -1.68 9.94 71.23 0.71 -0.97 16 22 O -0.20 -6.93 10.73 0.38 0.00 -6.93 16 23 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 25 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.12 2.60 8.14 -2.38 -0.02 2.58 16 27 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.07 2.81 7.43 -2.39 -0.02 2.79 16 29 H 0.08 2.94 8.09 -2.39 -0.02 2.92 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.04 2.48 5.80 -2.39 -0.01 2.47 16 34 H 0.01 0.52 8.04 -2.39 -0.02 0.50 16 35 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 36 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.10 2.07 8.14 -2.38 -0.02 2.06 16 38 H 0.10 2.88 6.38 -2.39 -0.02 2.87 16 Total: -1.00 -67.59 321.85 4.96 -62.63 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 1.05 Total: 10.59 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 5.73 Total: 16.80 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -3.79 Total: -102.71 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.05 Total: -33.00 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -67.59 4.96 -62.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507438915.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.460 kcal (2) G-P(sol) polarization free energy of solvation -67.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds