Wall clock time and date at job start Mon Mar 30 2020 04:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.53048 * 109.45852 * 300.07181 * 9 7 2 11 11 C 1.53188 * 109.31023 * 178.61623 * 10 9 7 12 12 N 1.46928 * 108.78054 * 54.63386 * 11 10 9 13 13 C 1.34770 * 120.63497 * 126.36612 * 12 11 10 14 14 O 1.21285 * 120.00237 * 180.02562 * 13 12 11 15 15 C 1.50699 * 119.99893 * 0.02721 * 13 12 11 16 16 H 1.09005 * 110.85621 * 300.69934 * 15 13 12 17 17 C 1.54479 * 110.97126 * 64.48909 * 15 13 12 18 18 N 1.46822 * 105.44658 * 143.50979 * 17 15 13 19 19 C 1.34424 * 111.31308 * 343.03428 * 18 17 15 20 20 O 1.21281 * 124.93883 * 180.33965 * 19 18 17 21 21 C 1.51277 * 110.11766 * 0.37528 * 19 18 17 22 22 C 1.46929 * 118.73175 * 306.38825 * 12 11 10 23 23 C 1.53039 * 109.46082 * 180.02562 * 9 7 2 24 24 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 25 25 H 1.08995 * 109.46072 * 60.02360 * 9 7 2 26 26 H 1.08999 * 109.49306 * 298.56434 * 10 9 7 27 27 H 1.08994 * 109.49796 * 58.66006 * 10 9 7 28 28 H 1.08999 * 109.59009 * 294.84241 * 11 10 9 29 29 H 1.09006 * 109.58461 * 174.41690 * 11 10 9 30 30 H 1.09009 * 110.24533 * 262.53087 * 17 15 13 31 31 H 1.08990 * 110.24651 * 24.53130 * 17 15 13 32 32 H 0.97000 * 124.33944 * 162.99457 * 18 17 15 33 33 H 1.09000 * 110.49039 * 257.57630 * 21 19 18 34 34 H 1.09006 * 110.48400 * 134.92740 * 21 19 18 35 35 H 1.08997 * 109.59110 * 293.81953 * 22 12 11 36 36 H 1.09001 * 109.70134 * 173.46299 * 22 12 11 37 37 H 1.08997 * 109.49531 * 301.33258 * 23 9 7 38 38 H 1.08997 * 109.49675 * 61.40210 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 0.3751 -2.5822 1.2465 11 6 -0.4152 -3.8943 1.2258 12 7 0.5267 -5.0116 1.0731 13 6 0.5200 -6.0394 1.9447 14 8 1.3030 -6.9556 1.8080 15 6 -0.4603 -6.0505 3.0892 16 1 -0.3241 -5.1759 3.7253 17 6 -1.9133 -6.1369 2.5717 18 7 -2.6231 -6.9836 3.5387 19 6 -1.7633 -7.6829 4.2994 20 8 -2.0831 -8.4622 5.1718 21 6 -0.3387 -7.3558 3.9094 22 6 1.4764 -4.9866 -0.0478 23 6 2.2457 -3.6623 -0.0122 24 1 -0.4849 0.8401 0.0041 25 1 0.6211 -2.5548 -0.8935 26 1 1.0064 -2.5517 2.1345 27 1 -0.3172 -1.7406 1.2626 28 1 -1.1129 -3.8875 0.3884 29 1 -0.9645 -4.0048 2.1608 30 1 -2.3616 -5.1438 2.5385 31 1 -1.9349 -6.5945 1.5827 32 1 -3.5886 -7.0316 3.6187 33 1 0.0820 -8.1533 3.2970 34 1 0.2720 -7.1927 4.7974 35 1 0.9330 -5.0688 -0.9891 36 1 2.1755 -5.8177 0.0444 37 1 2.8848 -3.5895 -0.8921 38 1 2.8593 -3.6211 0.8877 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541984222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:58 Heat of formation + Delta-G solvation = -78.842287 kcal Electronic energy + Delta-G solvation = -20722.304839 eV Core-core repulsion = 17564.067868 eV Total energy + Delta-G solvation = -3158.236970 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.89083 -39.32166 -37.03537 -36.27211 -33.64647 -31.99199 -31.05472 -30.17406 -27.86820 -26.32842 -23.96300 -22.56427 -22.13898 -20.69356 -19.82850 -18.56811 -17.61004 -17.23239 -16.39826 -15.92569 -15.43587 -14.91580 -14.79570 -14.61076 -13.86138 -13.65304 -13.43322 -13.18281 -13.14708 -12.83405 -12.73052 -12.31531 -11.74414 -11.66263 -11.40077 -11.32364 -11.02427 -10.69098 -10.48615 -10.21800 -10.06164 -9.80116 -9.57473 -9.33901 -9.27054 -9.03147 -8.47184 -8.16135 -6.12040 -4.17742 2.45525 2.69423 3.14751 3.21791 3.25470 3.30974 3.34896 4.15591 4.20579 4.34389 4.57389 4.76788 5.00123 5.17430 5.21939 5.34446 5.48558 5.65407 5.69120 5.79304 5.83349 5.93725 6.04687 6.14772 6.32863 6.53981 6.56986 6.76779 6.79003 6.92165 7.01213 7.15176 7.56775 7.74353 7.81488 7.93751 8.07164 8.31078 8.33719 8.85987 9.48085 10.93671 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.033677 B = 0.004478 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.233706 B = 6250.818388 C = 6706.994183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.126 4.126 11 C 0.098 3.902 12 N -0.595 5.595 13 C 0.522 3.478 14 O -0.550 6.550 15 C -0.124 4.124 16 H 0.119 0.881 17 C 0.111 3.889 18 N -0.732 5.732 19 C 0.523 3.477 20 O -0.537 6.537 21 C -0.140 4.140 22 C 0.111 3.889 23 C -0.124 4.124 24 H 0.260 0.740 25 H 0.028 0.972 26 H 0.040 0.960 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.411 0.589 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.686 -8.326 3.172 10.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.029 3.971 10 C -0.164 4.164 11 C -0.024 4.024 12 N -0.326 5.326 13 C 0.308 3.692 14 O -0.429 6.429 15 C -0.146 4.146 16 H 0.137 0.863 17 C -0.014 4.014 18 N -0.388 5.388 19 C 0.309 3.691 20 O -0.414 6.414 21 C -0.180 4.180 22 C -0.011 4.011 23 C -0.162 4.162 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.250 0.750 33 H 0.140 0.860 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.454 -9.067 3.518 10.697 hybrid contribution -0.021 1.255 -0.061 1.257 sum -4.476 -7.812 3.457 9.644 Atomic orbital electron populations 1.69833 1.05853 1.26434 1.51019 1.24949 0.94873 0.99085 0.94994 0.86564 0.80228 0.83788 0.77604 1.19814 1.21024 1.21040 1.21245 0.93035 0.90527 1.50208 0.92621 1.18645 0.92680 0.91805 0.93935 1.22042 1.00119 0.94497 0.99751 1.22209 0.91795 0.87668 1.00740 1.48230 1.36113 1.20699 1.27578 1.19968 0.84333 0.82137 0.82741 1.90663 1.41374 1.36393 1.74503 1.22252 0.94417 1.00748 0.97173 0.86318 1.22182 0.90494 0.96104 0.92636 1.46258 1.09541 1.45528 1.37453 1.20938 0.88897 0.79068 0.80167 1.90749 1.82729 1.35980 1.31967 1.22294 0.95013 0.98428 1.02316 1.21739 0.91830 0.99874 0.87636 1.22014 0.98941 0.94108 1.01138 0.92997 0.95380 0.94122 0.87660 0.91550 0.91272 0.88741 0.90365 0.74998 0.86023 0.87476 0.91995 0.90215 0.92045 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.24 11.32 55.43 0.63 -22.62 16 2 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 3 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -12.96 8.56 -34.44 -0.29 -13.26 16 8 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.05 2.06 -91.73 -0.19 0.86 16 10 C -0.13 -2.49 5.15 -26.61 -0.14 -2.62 16 11 C 0.10 1.46 5.72 -3.71 -0.02 1.44 16 12 N -0.59 -9.14 2.97 -172.77 -0.51 -9.65 16 13 C 0.52 7.71 6.99 -10.99 -0.08 7.63 16 14 O -0.55 -9.75 14.95 5.55 0.08 -9.66 16 15 C -0.12 -1.39 2.54 -90.14 -0.23 -1.62 16 16 H 0.12 1.20 7.69 -51.93 -0.40 0.80 16 17 C 0.11 1.01 6.29 -3.09 -0.02 1.00 16 18 N -0.73 -7.09 6.24 -59.16 -0.37 -7.46 16 19 C 0.52 6.64 8.43 -10.86 -0.09 6.55 16 20 O -0.54 -8.84 18.03 5.56 0.10 -8.74 16 21 C -0.14 -1.64 6.19 -26.74 -0.17 -1.80 16 22 C 0.11 1.82 6.43 -3.71 -0.02 1.80 16 23 C -0.12 -2.34 5.30 -26.61 -0.14 -2.48 16 24 H 0.26 6.51 8.31 -40.82 -0.34 6.18 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.11 2.36 6.04 -51.93 -0.31 2.04 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.82 4.48 -51.93 -0.23 0.59 16 30 H 0.09 0.71 6.78 -51.92 -0.35 0.36 16 31 H 0.08 0.73 7.88 -51.93 -0.41 0.32 16 32 H 0.41 3.21 8.96 -40.82 -0.37 2.85 16 33 H 0.12 1.55 7.02 -51.93 -0.36 1.19 16 34 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.31 7.01 -51.93 -0.36 0.95 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 302.24 15.07 4.55 4.55 Total: -1.00 -29.92 302.24 -7.32 -37.25 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.30 Total: 2.29 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -1.48 Total: -1.02 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: -0.26 Total: -39.73 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.18 Total: -18.41 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.92 -7.32 -37.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541984222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.594 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds