Wall clock time and date at job start Mon Mar 30 2020 04:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.53048 * 109.45852 * 300.07181 * 9 7 2 11 11 C 1.53188 * 109.31023 * 178.61623 * 10 9 7 12 12 N 1.46928 * 108.78054 * 54.63386 * 11 10 9 13 13 C 1.34770 * 120.63497 * 126.36612 * 12 11 10 14 14 O 1.21285 * 120.00237 * 180.02562 * 13 12 11 15 15 C 1.50699 * 119.99893 * 0.02721 * 13 12 11 16 16 H 1.09005 * 110.85621 * 300.69934 * 15 13 12 17 17 C 1.54479 * 110.97126 * 64.48909 * 15 13 12 18 18 N 1.46822 * 105.44658 * 143.50979 * 17 15 13 19 19 C 1.34424 * 111.31308 * 343.03428 * 18 17 15 20 20 O 1.21281 * 124.93883 * 180.33965 * 19 18 17 21 21 C 1.51277 * 110.11766 * 0.37528 * 19 18 17 22 22 C 1.46929 * 118.73175 * 306.38825 * 12 11 10 23 23 C 1.53039 * 109.46082 * 180.02562 * 9 7 2 24 24 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 25 25 H 1.08995 * 109.46072 * 60.02360 * 9 7 2 26 26 H 1.08999 * 109.49306 * 298.56434 * 10 9 7 27 27 H 1.08994 * 109.49796 * 58.66006 * 10 9 7 28 28 H 1.08999 * 109.59009 * 294.84241 * 11 10 9 29 29 H 1.09006 * 109.58461 * 174.41690 * 11 10 9 30 30 H 1.09009 * 110.24533 * 262.53087 * 17 15 13 31 31 H 1.08990 * 110.24651 * 24.53130 * 17 15 13 32 32 H 0.97000 * 124.33944 * 162.99457 * 18 17 15 33 33 H 1.09000 * 110.49039 * 257.57630 * 21 19 18 34 34 H 1.09006 * 110.48400 * 134.92740 * 21 19 18 35 35 H 1.08997 * 109.59110 * 293.81953 * 22 12 11 36 36 H 1.09001 * 109.70134 * 173.46299 * 22 12 11 37 37 H 1.08997 * 109.49531 * 301.33258 * 23 9 7 38 38 H 1.08997 * 109.49675 * 61.40210 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 0.3751 -2.5822 1.2465 11 6 -0.4152 -3.8943 1.2258 12 7 0.5267 -5.0116 1.0731 13 6 0.5200 -6.0394 1.9447 14 8 1.3030 -6.9556 1.8080 15 6 -0.4603 -6.0505 3.0892 16 1 -0.3241 -5.1759 3.7253 17 6 -1.9133 -6.1369 2.5717 18 7 -2.6231 -6.9836 3.5387 19 6 -1.7633 -7.6829 4.2994 20 8 -2.0831 -8.4622 5.1718 21 6 -0.3387 -7.3558 3.9094 22 6 1.4764 -4.9866 -0.0478 23 6 2.2457 -3.6623 -0.0122 24 1 -0.4849 0.8401 0.0041 25 1 0.6211 -2.5548 -0.8935 26 1 1.0064 -2.5517 2.1345 27 1 -0.3172 -1.7406 1.2626 28 1 -1.1129 -3.8875 0.3884 29 1 -0.9645 -4.0048 2.1608 30 1 -2.3616 -5.1438 2.5385 31 1 -1.9349 -6.5945 1.5827 32 1 -3.5886 -7.0316 3.6187 33 1 0.0820 -8.1533 3.2970 34 1 0.2720 -7.1927 4.7974 35 1 0.9330 -5.0688 -0.9891 36 1 2.1755 -5.8177 0.0444 37 1 2.8848 -3.5895 -0.8921 38 1 2.8593 -3.6211 0.8877 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541984222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:57 Heat of formation + Delta-G solvation = -99.472884 kcal Electronic energy + Delta-G solvation = -20723.199449 eV Core-core repulsion = 17564.067868 eV Total energy + Delta-G solvation = -3159.131580 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.93341 -40.48349 -38.43899 -37.32059 -35.31552 -33.31236 -32.37714 -31.55095 -28.89034 -27.89787 -25.32588 -23.95422 -23.44038 -21.62824 -21.21840 -19.83628 -18.71705 -18.38071 -18.07816 -17.17178 -16.52740 -16.45396 -16.05540 -15.83522 -14.96620 -14.84504 -14.78150 -14.45745 -14.35587 -14.22763 -14.12189 -13.62305 -13.20746 -13.01567 -12.79821 -12.54268 -12.44426 -12.31243 -12.10379 -11.87595 -11.42877 -11.12298 -10.97206 -10.94408 -10.66663 -10.35954 -10.17449 -9.52455 -8.05981 -6.17546 1.41290 1.46063 1.47124 1.54529 1.56122 2.02684 2.36380 2.46265 3.17540 3.21573 3.31175 3.62000 3.88384 4.02996 4.26131 4.32094 4.41818 4.53754 4.54006 4.56450 4.64394 4.78510 4.84467 4.90161 4.94238 5.04349 5.23816 5.30480 5.48255 5.59047 5.69162 5.74374 5.94955 6.04609 6.19904 6.43884 6.52118 6.92015 7.13285 7.18847 7.50142 8.97325 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.033677 B = 0.004478 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.233706 B = 6250.818388 C = 6706.994183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.534 4.534 8 H 0.043 0.957 9 C 0.044 3.956 10 C -0.119 4.119 11 C 0.109 3.891 12 N -0.597 5.597 13 C 0.524 3.476 14 O -0.581 6.581 15 C -0.119 4.119 16 H 0.139 0.861 17 C 0.113 3.887 18 N -0.715 5.715 19 C 0.521 3.479 20 O -0.581 6.581 21 C -0.137 4.137 22 C 0.117 3.883 23 C -0.115 4.115 24 H 0.261 0.739 25 H 0.006 0.994 26 H 0.029 0.971 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.423 0.577 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.673 -8.248 3.464 10.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.177 4.177 3 Si 0.769 3.231 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.062 0.938 9 C 0.025 3.975 10 C -0.157 4.157 11 C -0.012 4.012 12 N -0.328 5.328 13 C 0.312 3.688 14 O -0.461 6.461 15 C -0.140 4.140 16 H 0.157 0.843 17 C -0.012 4.012 18 N -0.370 5.370 19 C 0.309 3.691 20 O -0.461 6.461 21 C -0.177 4.177 22 C -0.005 4.005 23 C -0.153 4.153 24 H 0.071 0.929 25 H 0.024 0.976 26 H 0.048 0.952 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.141 0.859 31 H 0.102 0.898 32 H 0.263 0.737 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.464 -8.967 3.789 11.164 hybrid contribution 0.334 1.254 -0.205 1.313 sum -5.131 -7.714 3.583 9.933 Atomic orbital electron populations 1.69924 1.06557 1.26975 1.51365 1.25531 0.95651 1.01547 0.94967 0.85751 0.79037 0.80730 0.77563 1.19981 1.20846 1.20641 1.21589 0.92826 0.92472 1.50346 0.93842 1.18631 0.93116 0.91602 0.94133 1.21812 0.99463 0.96584 0.97882 1.22120 0.91020 0.84801 1.03285 1.48233 1.35990 1.21078 1.27478 1.20468 0.84286 0.81192 0.82830 1.90660 1.42785 1.37489 1.75213 1.22247 0.94714 1.01209 0.95836 0.84349 1.22308 0.89044 0.97454 0.92354 1.46177 1.10039 1.44390 1.36428 1.21040 0.89564 0.78703 0.79842 1.90730 1.83345 1.38014 1.34038 1.22236 0.94635 0.98330 1.02515 1.21588 0.92119 0.98006 0.88826 1.21857 0.98368 0.94568 1.00500 0.92945 0.97554 0.95210 0.90097 0.90533 0.87406 0.85901 0.89836 0.73651 0.87210 0.86755 0.90802 0.90187 0.92193 0.94053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.24 11.32 21.45 0.24 -46.99 16 2 C 0.02 1.14 5.30 84.66 0.45 1.58 16 3 Si 0.94 41.15 29.54 68.60 2.03 43.17 16 4 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.53 -27.34 8.56 25.60 0.22 -27.12 16 8 H 0.04 2.26 7.74 -2.91 -0.02 2.24 16 9 C 0.04 1.93 2.06 -11.51 -0.02 1.90 16 10 C -0.12 -4.59 5.15 30.67 0.16 -4.43 16 11 C 0.11 2.94 5.72 86.36 0.49 3.44 16 12 N -0.60 -16.93 2.97 -818.90 -2.43 -19.37 16 13 C 0.52 14.20 6.99 87.66 0.61 14.81 16 14 O -0.58 -19.70 14.95 -3.04 -0.05 -19.75 16 15 C -0.12 -2.27 2.54 -10.48 -0.03 -2.30 16 16 H 0.14 2.21 7.69 -2.38 -0.02 2.19 16 17 C 0.11 1.61 6.29 86.82 0.55 2.15 16 18 N -0.71 -11.63 6.24 -459.68 -2.87 -14.50 16 19 C 0.52 12.27 8.43 87.90 0.74 13.01 16 20 O -0.58 -18.64 18.03 -3.03 -0.05 -18.69 16 21 C -0.14 -2.93 6.19 30.59 0.19 -2.74 16 22 C 0.12 3.68 6.43 86.36 0.56 4.23 16 23 C -0.11 -4.31 5.30 30.67 0.16 -4.15 16 24 H 0.26 12.99 8.31 -92.71 -0.77 12.22 16 25 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.08 3.57 6.04 -2.39 -0.01 3.55 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.11 2.07 4.48 -2.38 -0.01 2.06 16 30 H 0.12 1.16 6.78 -2.38 -0.02 1.15 16 31 H 0.08 1.21 7.88 -2.39 -0.02 1.19 16 32 H 0.42 5.26 8.96 -92.71 -0.83 4.43 16 33 H 0.11 2.68 7.02 -2.39 -0.02 2.66 16 34 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.08 2.54 7.01 -2.39 -0.02 2.53 16 37 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -65.16 302.24 1.19 -63.97 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.25 Total: 11.75 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 4.08 Total: 0.40 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -5.06 Total: -80.86 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.10 Total: -38.44 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Total: -65.16 1.19 -63.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541984222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.502 kcal (2) G-P(sol) polarization free energy of solvation -65.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds