Wall clock time and date at job start Mon Mar 30 2020 04:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99440 * 2 1 4 4 C 1.52999 * 109.46911 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47142 * 65.00388 * 4 3 2 6 6 C 1.36982 * 120.00473 * 92.67915 * 5 4 3 7 7 H 1.08000 * 120.00402 * 232.72675 * 6 5 4 8 8 C 1.38977 * 119.99452 * 52.99944 * 6 5 4 9 9 N 1.31418 * 119.99423 * 195.92670 * 8 6 5 10 10 Si 1.86800 * 120.00123 * 15.92621 * 8 6 5 11 11 H 1.48498 * 109.46962 * 93.66651 * 10 8 6 12 12 H 1.48501 * 109.47076 * 213.66932 * 10 8 6 13 13 H 1.48504 * 109.46973 * 333.66420 * 10 8 6 14 14 C 1.34782 * 120.00051 * 272.68562 * 5 4 3 15 15 O 1.21659 * 119.99795 * 357.46618 * 14 5 4 16 16 C 1.47175 * 120.00286 * 177.46819 * 14 5 4 17 17 C 1.46716 * 127.01863 * 7.15103 * 16 14 5 18 18 C 1.34451 * 106.39105 * 179.97438 * 17 16 14 19 19 N 1.36424 * 109.08402 * 0.02562 * 18 17 16 20 20 C 1.46499 * 124.81699 * 180.02562 * 19 18 17 21 21 C 1.34699 * 110.36555 * 359.74356 * 19 18 17 22 22 C 1.50696 * 125.90581 * 180.25251 * 21 19 18 23 23 H 1.08997 * 109.47286 * 60.00169 * 1 2 3 24 24 H 1.09000 * 109.46335 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47055 * 299.99590 * 1 2 3 26 26 H 1.09000 * 109.47175 * 60.00372 * 3 2 1 27 27 H 1.08998 * 109.47289 * 300.00069 * 3 2 1 28 28 H 1.08996 * 109.47594 * 305.00361 * 4 3 2 29 29 H 1.09007 * 109.47301 * 184.99688 * 4 3 2 30 30 H 0.97002 * 119.99115 * 185.00654 * 9 8 6 31 31 H 1.08003 * 126.80857 * 0.02562 * 17 16 14 32 32 H 1.07998 * 125.46106 * 180.02562 * 18 17 16 33 33 H 1.09002 * 109.47101 * 89.97589 * 20 19 18 34 34 H 1.08999 * 109.47461 * 209.97325 * 20 19 18 35 35 H 1.08996 * 109.47480 * 329.97742 * 20 19 18 36 36 H 1.08993 * 109.47631 * 270.18902 * 22 21 19 37 37 H 1.09004 * 109.46992 * 30.18505 * 22 21 19 38 38 H 1.09002 * 109.47262 * 150.17801 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5642 -1.2509 6 6 4.3207 1.3482 -2.3202 7 1 3.8668 1.1754 -3.2848 8 6 5.2580 2.3625 -2.1650 9 7 5.3639 3.3042 -3.0756 10 14 6.3673 2.3872 -0.6623 11 1 7.6451 1.7001 -0.9790 12 1 6.6444 3.7937 -0.2746 13 1 5.6942 1.6875 0.4614 14 6 4.0441 -0.7782 -1.3503 15 8 3.7829 -1.4734 -0.3867 16 6 4.4337 -1.4032 -2.6246 17 6 4.9180 -0.7224 -3.8306 18 6 5.1504 -1.6837 -4.7415 19 7 4.8489 -2.8972 -4.1961 20 6 4.9764 -4.1811 -4.8900 21 6 4.4231 -2.7480 -2.9269 22 6 4.0042 -3.8589 -1.9988 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 3.8508 0.5687 0.8426 29 1 3.9784 2.1768 0.0902 30 1 6.0654 3.9704 -3.0048 31 1 5.0606 0.3402 -3.9607 32 1 5.5170 -1.5212 -5.7442 33 1 5.9743 -4.5868 -4.7230 34 1 4.2319 -4.8779 -4.5050 35 1 4.8182 -4.0340 -5.9583 36 1 2.9361 -4.0438 -2.1122 37 1 4.5578 -4.7653 -2.2440 38 1 4.2160 -3.5714 -0.9690 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590892342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:44 Heat of formation + Delta-G solvation = -7.973377 kcal Electronic energy + Delta-G solvation = -21259.204063 eV Core-core repulsion = 18104.040200 eV Total energy + Delta-G solvation = -3155.163864 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46666 -38.32862 -36.81535 -34.62923 -32.21175 -31.82731 -30.82979 -29.31624 -26.27543 -25.69671 -25.50607 -24.48727 -22.41006 -20.65989 -19.12634 -18.27580 -16.89657 -15.96349 -15.86532 -15.48356 -15.02995 -14.94484 -14.51145 -14.32381 -13.84434 -13.39652 -12.84803 -12.80195 -12.44316 -12.33076 -12.15219 -12.06526 -11.88753 -11.68469 -11.53503 -11.36147 -11.04277 -10.88393 -10.66131 -10.32113 -9.97493 -9.73428 -9.00423 -8.91597 -8.31658 -7.67516 -7.43376 -7.15479 -6.31902 -4.02547 2.65128 3.22679 3.31844 3.39925 3.45648 3.46124 4.29799 4.47271 4.72794 4.78659 5.00142 5.17256 5.30819 5.39991 5.50107 5.64297 5.66378 5.74778 5.81372 5.96347 6.02619 6.08303 6.10678 6.15704 6.41693 6.46196 6.57803 6.62964 6.78221 6.99250 7.24088 7.64933 7.76896 7.86768 7.95427 8.03463 8.35931 8.45843 9.19188 9.62581 10.03141 10.77779 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.014452 B = 0.009451 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.049571 B = 2961.884683 C = 4200.722692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.364 6.364 3 C 0.049 3.951 4 C 0.117 3.883 5 N -0.471 5.471 6 C -0.327 4.327 7 H 0.107 0.893 8 C 0.067 3.933 9 N -0.872 5.872 10 Si 0.859 3.141 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.251 1.251 14 C 0.571 3.429 15 O -0.586 6.586 16 C -0.195 4.195 17 C -0.133 4.133 18 C -0.063 4.063 19 N -0.453 5.453 20 C 0.075 3.925 21 C 0.064 3.936 22 C -0.082 4.082 23 H 0.033 0.967 24 H 0.076 0.924 25 H 0.030 0.970 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.271 0.729 31 H 0.181 0.819 32 H 0.154 0.846 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.094 -8.722 -1.058 9.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.283 6.283 3 C -0.029 4.029 4 C -0.007 4.007 5 N -0.193 5.193 6 C -0.454 4.454 7 H 0.124 0.876 8 C -0.139 4.139 9 N -0.509 5.509 10 Si 0.685 3.315 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.175 1.175 14 C 0.362 3.638 15 O -0.470 6.470 16 C -0.205 4.205 17 C -0.156 4.156 18 C -0.187 4.187 19 N -0.132 5.132 20 C -0.068 4.068 21 C -0.051 4.051 22 C -0.139 4.139 23 H 0.052 0.948 24 H 0.095 0.905 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.198 0.802 32 H 0.171 0.829 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.023 -9.277 -0.798 9.790 hybrid contribution 0.527 0.571 0.323 0.842 sum -2.495 -8.706 -0.476 9.069 Atomic orbital electron populations 1.22625 0.83231 1.01687 0.98891 1.88155 1.17570 1.27447 1.95088 1.23038 0.95794 0.84756 0.99273 1.21720 0.90892 0.98296 0.89768 1.43293 1.60075 1.04071 1.11855 1.19210 1.23124 1.12081 0.91013 0.87613 1.25502 0.96624 0.94634 0.97141 1.69770 1.31760 1.13099 1.36249 0.87209 0.82215 0.77348 0.84704 1.20352 1.21236 1.17458 1.17468 0.77829 0.82246 0.86221 1.90574 1.54172 1.62844 1.39446 1.20459 1.12782 0.91100 0.96187 1.23388 1.00612 1.00441 0.91169 1.21753 1.12959 0.83573 1.00387 1.43365 1.52485 1.06449 1.10876 1.21884 1.02387 0.84709 0.97778 1.20451 1.03773 0.95622 0.85252 1.20393 1.00295 0.93360 0.99862 0.94837 0.90539 0.95152 0.94283 0.92803 0.91053 0.90284 0.91835 0.80237 0.82861 0.91708 0.90496 0.90369 0.91729 0.93236 0.88162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.36 -7.76 9.29 -46.54 -0.43 -8.20 16 3 C 0.05 1.00 6.28 37.16 0.23 1.23 16 4 C 0.12 2.67 3.88 -4.04 -0.02 2.66 16 5 N -0.47 -11.85 1.86 -116.11 -0.22 -12.07 16 6 C -0.33 -8.53 6.78 -14.98 -0.10 -8.63 16 7 H 0.11 2.93 5.99 -52.49 -0.31 2.61 16 8 C 0.07 1.75 5.31 -17.45 -0.09 1.66 16 9 N -0.87 -23.81 13.95 55.50 0.77 -23.03 16 10 Si 0.86 20.49 26.53 -169.99 -4.51 15.98 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.25 -5.83 5.15 56.52 0.29 -5.54 16 14 C 0.57 14.55 7.18 -12.63 -0.09 14.46 16 15 O -0.59 -15.46 13.54 -6.09 -0.08 -15.54 16 16 C -0.20 -4.56 6.18 -102.99 -0.64 -5.20 16 17 C -0.13 -2.93 9.17 -37.50 -0.34 -3.28 16 18 C -0.06 -1.14 11.32 -16.85 -0.19 -1.33 16 19 N -0.45 -7.67 3.09 -119.59 -0.37 -8.04 16 20 C 0.07 0.84 10.61 59.85 0.63 1.47 16 21 C 0.06 1.27 6.93 -81.48 -0.56 0.71 16 22 C -0.08 -1.38 9.36 36.00 0.34 -1.04 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 1.67 7.38 -51.93 -0.38 1.29 16 29 H 0.08 1.76 5.05 -51.93 -0.26 1.49 16 30 H 0.27 7.01 8.32 -40.82 -0.34 6.67 16 31 H 0.18 4.34 5.09 -52.48 -0.27 4.07 16 32 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.75 7.51 -51.93 -0.39 0.36 16 35 H 0.08 0.72 8.13 -51.93 -0.42 0.29 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.66 7.60 -51.93 -0.39 0.27 16 38 H 0.10 1.93 6.40 -51.93 -0.33 1.59 16 LS Contribution 308.13 15.07 4.64 4.64 Total: -1.00 -31.80 308.13 -5.30 -37.10 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.39 Total: 4.80 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 0.28 Total: 4.35 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.19 Total: -43.14 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.51 Total: -23.74 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.51 Total: 15.98 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.80 -5.30 -37.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.131 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds