Wall clock time and date at job start Mon Mar 30 2020 04:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99440 * 2 1 4 4 C 1.52999 * 109.46911 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47142 * 65.00388 * 4 3 2 6 6 C 1.36982 * 120.00473 * 92.67915 * 5 4 3 7 7 H 1.08000 * 120.00402 * 232.72675 * 6 5 4 8 8 C 1.38977 * 119.99452 * 52.99944 * 6 5 4 9 9 N 1.31418 * 119.99423 * 195.92670 * 8 6 5 10 10 Si 1.86800 * 120.00123 * 15.92621 * 8 6 5 11 11 H 1.48498 * 109.46962 * 93.66651 * 10 8 6 12 12 H 1.48501 * 109.47076 * 213.66932 * 10 8 6 13 13 H 1.48504 * 109.46973 * 333.66420 * 10 8 6 14 14 C 1.34782 * 120.00051 * 272.68562 * 5 4 3 15 15 O 1.21659 * 119.99795 * 357.46618 * 14 5 4 16 16 C 1.47175 * 120.00286 * 177.46819 * 14 5 4 17 17 C 1.46716 * 127.01863 * 7.15103 * 16 14 5 18 18 C 1.34451 * 106.39105 * 179.97438 * 17 16 14 19 19 N 1.36424 * 109.08402 * 0.02562 * 18 17 16 20 20 C 1.46499 * 124.81699 * 180.02562 * 19 18 17 21 21 C 1.34699 * 110.36555 * 359.74356 * 19 18 17 22 22 C 1.50696 * 125.90581 * 180.25251 * 21 19 18 23 23 H 1.08997 * 109.47286 * 60.00169 * 1 2 3 24 24 H 1.09000 * 109.46335 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47055 * 299.99590 * 1 2 3 26 26 H 1.09000 * 109.47175 * 60.00372 * 3 2 1 27 27 H 1.08998 * 109.47289 * 300.00069 * 3 2 1 28 28 H 1.08996 * 109.47594 * 305.00361 * 4 3 2 29 29 H 1.09007 * 109.47301 * 184.99688 * 4 3 2 30 30 H 0.97002 * 119.99115 * 185.00654 * 9 8 6 31 31 H 1.08003 * 126.80857 * 0.02562 * 17 16 14 32 32 H 1.07998 * 125.46106 * 180.02562 * 18 17 16 33 33 H 1.09002 * 109.47101 * 89.97589 * 20 19 18 34 34 H 1.08999 * 109.47461 * 209.97325 * 20 19 18 35 35 H 1.08996 * 109.47480 * 329.97742 * 20 19 18 36 36 H 1.08993 * 109.47631 * 270.18902 * 22 21 19 37 37 H 1.09004 * 109.46992 * 30.18505 * 22 21 19 38 38 H 1.09002 * 109.47262 * 150.17801 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5642 -1.2509 6 6 4.3207 1.3482 -2.3202 7 1 3.8668 1.1754 -3.2848 8 6 5.2580 2.3625 -2.1650 9 7 5.3639 3.3042 -3.0756 10 14 6.3673 2.3872 -0.6623 11 1 7.6451 1.7001 -0.9790 12 1 6.6444 3.7937 -0.2746 13 1 5.6942 1.6875 0.4614 14 6 4.0441 -0.7782 -1.3503 15 8 3.7829 -1.4734 -0.3867 16 6 4.4337 -1.4032 -2.6246 17 6 4.9180 -0.7224 -3.8306 18 6 5.1504 -1.6837 -4.7415 19 7 4.8489 -2.8972 -4.1961 20 6 4.9764 -4.1811 -4.8900 21 6 4.4231 -2.7480 -2.9269 22 6 4.0042 -3.8589 -1.9988 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 3.8508 0.5687 0.8426 29 1 3.9784 2.1768 0.0902 30 1 6.0654 3.9704 -3.0048 31 1 5.0606 0.3402 -3.9607 32 1 5.5170 -1.5212 -5.7442 33 1 5.9743 -4.5868 -4.7230 34 1 4.2319 -4.8779 -4.5050 35 1 4.8182 -4.0340 -5.9583 36 1 2.9361 -4.0438 -2.1122 37 1 4.5578 -4.7653 -2.2440 38 1 4.2160 -3.5714 -0.9690 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590892342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:44 Heat of formation + Delta-G solvation = -28.244803 kcal Electronic energy + Delta-G solvation = -21260.083098 eV Core-core repulsion = 18104.040200 eV Total energy + Delta-G solvation = -3156.042899 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.96454 -40.13330 -38.42259 -36.56132 -33.90401 -33.49743 -32.27175 -30.97385 -27.64415 -27.20964 -26.88800 -26.33473 -24.04497 -22.33948 -20.78435 -20.05662 -18.53143 -17.72402 -17.42250 -17.12421 -16.58299 -16.34951 -16.14090 -15.94788 -15.54056 -15.11495 -14.37812 -14.31766 -14.01040 -13.81581 -13.73583 -13.49331 -13.34310 -13.27929 -13.02085 -12.79937 -12.66725 -12.60329 -12.18764 -11.93898 -11.84098 -11.63325 -10.93572 -10.52221 -10.23750 -9.34368 -9.17651 -8.78044 -8.36470 -6.08005 1.04855 1.29189 1.38484 1.47622 1.81079 2.16711 2.31424 2.80367 2.93035 3.02781 3.25177 4.06208 4.13698 4.25401 4.27955 4.33245 4.43989 4.50411 4.52059 4.55157 4.57660 4.67625 4.74306 4.78853 4.81203 4.82731 5.02286 5.05667 5.20098 5.44917 5.57886 5.69989 6.16536 6.27527 6.37898 6.40271 6.49286 6.65496 7.15330 7.65601 8.08616 8.76293 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.014452 B = 0.009451 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.049571 B = 2961.884683 C = 4200.722692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.399 6.399 3 C 0.057 3.943 4 C 0.110 3.890 5 N -0.481 5.481 6 C -0.312 4.312 7 H 0.081 0.919 8 C 0.035 3.965 9 N -0.904 5.904 10 Si 0.905 3.095 11 H -0.288 1.288 12 H -0.275 1.275 13 H -0.245 1.245 14 C 0.560 3.440 15 O -0.605 6.605 16 C -0.253 4.253 17 C -0.172 4.172 18 C -0.039 4.039 19 N -0.442 5.442 20 C 0.063 3.937 21 C 0.072 3.928 22 C -0.076 4.076 23 H 0.037 0.963 24 H 0.089 0.911 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.275 0.725 31 H 0.149 0.851 32 H 0.192 0.808 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.240 -10.763 -1.480 11.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.021 4.021 4 C -0.013 4.013 5 N -0.203 5.203 6 C -0.440 4.440 7 H 0.098 0.902 8 C -0.168 4.168 9 N -0.543 5.543 10 Si 0.730 3.270 11 H -0.215 1.215 12 H -0.200 1.200 13 H -0.169 1.169 14 C 0.353 3.647 15 O -0.491 6.491 16 C -0.262 4.262 17 C -0.196 4.196 18 C -0.164 4.164 19 N -0.118 5.118 20 C -0.076 4.076 21 C -0.046 4.046 22 C -0.133 4.133 23 H 0.056 0.944 24 H 0.107 0.893 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.166 0.834 32 H 0.209 0.791 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.181 -11.332 -1.230 11.834 hybrid contribution 0.522 1.062 0.358 1.236 sum -2.659 -10.270 -0.872 10.644 Atomic orbital electron populations 1.22845 0.80632 1.03060 1.00317 1.88096 1.20511 1.27869 1.95375 1.22904 0.93932 0.84903 1.00364 1.21809 0.93105 0.97919 0.88473 1.43414 1.60525 1.04214 1.12158 1.18943 1.22769 1.11660 0.90619 0.90166 1.25882 0.97396 0.94424 0.99066 1.69818 1.32657 1.13963 1.37836 0.86496 0.80195 0.77703 0.82601 1.21485 1.20009 1.16887 1.17929 0.77398 0.82291 0.87055 1.90530 1.55220 1.63065 1.40284 1.20602 1.16305 0.93242 0.96088 1.23056 1.03885 1.00020 0.92643 1.22095 1.10294 0.83261 1.00794 1.43695 1.50033 1.08151 1.09958 1.22364 1.04357 0.82025 0.98891 1.20782 1.02156 0.94986 0.86637 1.20379 1.01477 0.93866 0.97574 0.94450 0.89291 0.92563 0.90724 0.93940 0.91951 0.90034 0.91520 0.83409 0.79148 0.89624 0.88526 0.87701 0.90708 0.89114 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 11.01 113.37 1.25 2.10 16 2 O -0.40 -16.97 9.29 -138.16 -1.28 -18.25 16 3 C 0.06 2.29 6.28 71.98 0.45 2.74 16 4 C 0.11 5.12 3.88 86.38 0.34 5.45 16 5 N -0.48 -25.00 1.86 -639.48 -1.19 -26.19 16 6 C -0.31 -17.00 6.78 84.07 0.57 -16.43 16 7 H 0.08 4.75 5.99 -2.91 -0.02 4.73 16 8 C 0.03 1.89 5.31 84.93 0.45 2.34 16 9 N -0.90 -50.79 13.95 21.67 0.30 -50.49 16 10 Si 0.91 43.04 26.53 68.60 1.82 44.86 16 11 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 13 H -0.25 -11.34 5.15 99.48 0.51 -10.83 16 14 C 0.56 29.46 7.18 86.59 0.62 30.08 16 15 O -0.60 -32.71 13.54 6.60 0.09 -32.62 16 16 C -0.25 -12.05 6.18 -18.81 -0.12 -12.16 16 17 C -0.17 -7.83 9.17 23.62 0.22 -7.61 16 18 C -0.04 -1.34 11.32 83.11 0.94 -0.40 16 19 N -0.44 -13.66 3.09 -532.26 -1.64 -15.30 16 20 C 0.06 1.10 10.61 127.77 1.36 2.46 16 21 C 0.07 2.77 6.93 42.02 0.29 3.06 16 22 C -0.08 -2.39 9.36 71.23 0.67 -1.72 16 23 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 2.97 7.38 -2.39 -0.02 2.96 16 29 H 0.08 3.65 5.05 -2.38 -0.01 3.64 16 30 H 0.27 14.52 8.32 -92.71 -0.77 13.75 16 31 H 0.15 7.60 5.09 -2.91 -0.01 7.59 16 32 H 0.19 5.06 8.06 -2.91 -0.02 5.04 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.37 7.51 -2.39 -0.02 1.35 16 35 H 0.10 1.34 8.13 -2.39 -0.02 1.32 16 36 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.09 2.08 7.60 -2.38 -0.02 2.06 16 38 H 0.07 2.76 6.40 -2.39 -0.02 2.74 16 Total: -1.00 -72.35 308.13 5.99 -66.36 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.86 Total: 21.73 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 7.03 Total: 9.91 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -2.53 Total: -91.98 kcal Atomic # 8 Polarization: -49.68 SS G_CDS: -1.19 Total: -50.87 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.82 Total: 44.86 kcal Total: -72.35 5.99 -66.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.116 kcal (2) G-P(sol) polarization free energy of solvation -72.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds