Wall clock time and date at job start Mon Mar 30 2020 04:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30167 * 126.80132 * 2 1 4 4 O 1.20923 * 111.60489 * 180.02562 * 3 2 1 5 5 C 1.34044 * 111.56491 * 359.76525 * 4 3 2 6 6 C 1.50693 * 126.77475 * 180.28294 * 5 4 3 7 7 C 1.35454 * 106.44535 * 0.37890 * 5 4 3 8 8 C 1.50698 * 128.00315 * 179.90968 * 7 5 4 9 9 N 1.46493 * 109.47082 * 269.67559 * 8 7 5 10 10 C 1.34784 * 119.99864 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99649 * 359.72839 * 10 9 8 12 12 C 1.50694 * 119.99988 * 179.72721 * 10 9 8 13 13 C 1.53001 * 109.47168 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47355 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46978 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00135 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00095 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99892 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46884 * 60.00562 * 19 17 15 21 21 H 1.48505 * 109.46918 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47272 * 300.00241 * 19 17 15 23 23 H 1.09004 * 109.46754 * 269.97369 * 1 2 3 24 24 H 1.08997 * 109.47178 * 29.97379 * 1 2 3 25 25 H 1.08997 * 109.46971 * 149.97446 * 1 2 3 26 26 H 1.09002 * 109.47694 * 270.11071 * 6 5 4 27 27 H 1.08997 * 109.47505 * 30.11485 * 6 5 4 28 28 H 1.08999 * 109.47070 * 150.11494 * 6 5 4 29 29 H 1.09007 * 109.46606 * 149.67808 * 8 7 5 30 30 H 1.09006 * 109.47204 * 29.68266 * 8 7 5 31 31 H 0.97000 * 120.00740 * 359.72841 * 9 8 7 32 32 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 33 33 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 34 34 H 1.09000 * 109.47339 * 299.99895 * 13 12 10 35 35 H 1.09002 * 109.46926 * 60.00175 * 13 12 10 36 36 H 1.09000 * 109.46966 * 300.00313 * 14 13 12 37 37 H 1.09002 * 109.46807 * 60.00291 * 14 13 12 38 38 H 0.97004 * 120.00461 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 -0.0005 5 6 3.6025 -0.6069 0.0042 6 6 4.9021 -1.3695 0.0111 7 6 2.3539 -1.1321 -0.0007 8 6 1.9591 -2.5864 -0.0003 9 7 1.8299 -3.0577 -1.3813 10 6 1.4820 -4.3364 -1.6272 11 8 1.2807 -5.0981 -0.7051 12 6 1.3430 -4.8196 -3.0478 13 6 0.9435 -6.2965 -3.0474 14 6 0.8018 -6.7870 -4.4897 15 6 0.4088 -8.2418 -4.4893 16 1 0.2733 -8.7643 -3.5538 17 6 0.2213 -8.9056 -5.6831 18 7 0.3859 -8.2693 -6.8222 19 14 -0.2650 -10.7092 -5.6826 20 1 -1.5600 -10.8724 -4.9742 21 1 -0.4027 -11.1852 -7.0825 22 1 0.7813 -11.5039 -4.9907 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8897 -0.5142 26 1 5.2202 -1.5550 -1.0149 27 1 5.6637 -0.7852 0.5275 28 1 4.7628 -2.3203 0.5256 29 1 1.0054 -2.7038 0.5145 30 1 2.7233 -3.1703 0.5130 31 1 1.9905 -2.4485 -2.1188 32 1 0.5763 -4.2356 -3.5569 33 1 2.2944 -4.7012 -3.5666 34 1 1.7104 -6.8803 -2.5385 35 1 -0.0077 -6.4154 -2.5286 36 1 0.0346 -6.2031 -4.9983 37 1 1.7528 -6.6680 -5.0090 38 1 0.2537 -8.7362 -7.6622 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593967524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:48 Heat of formation + Delta-G solvation = -5.833708 kcal Electronic energy + Delta-G solvation = -19323.960310 eV Core-core repulsion = 16168.889229 eV Total energy + Delta-G solvation = -3155.071081 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.27174 -39.52239 -36.28619 -34.34868 -34.14926 -33.39010 -32.01908 -29.22143 -28.89226 -27.87359 -26.39394 -23.71132 -21.95642 -20.68269 -20.51367 -19.77926 -18.00240 -17.50159 -16.69729 -16.10895 -15.72774 -15.62408 -14.76026 -14.45060 -14.23719 -13.80165 -13.58506 -13.50973 -13.40125 -13.19210 -12.82417 -12.59967 -12.44192 -12.25293 -11.81689 -11.37817 -11.27489 -10.78435 -10.63209 -10.55338 -10.33107 -9.84208 -9.68072 -9.53314 -9.24328 -9.10435 -9.01383 -8.31697 -5.97521 -3.99064 1.05859 1.76684 2.72788 2.87780 3.36614 3.39840 3.40385 3.44484 3.82952 4.08542 4.41754 4.49356 4.56081 4.91359 4.98869 5.03432 5.14696 5.18189 5.30350 5.38472 5.41492 5.44142 5.52670 5.63070 5.70999 5.71230 5.82683 6.23981 6.36838 6.72120 6.92554 7.15858 7.53872 7.70791 7.83639 7.94154 8.03043 8.39530 8.47024 9.07897 9.64873 11.13941 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.038963 B = 0.002901 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.460238 B = 9649.168215 C = 9778.432986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.036 3.964 3 N -0.367 5.367 4 O 0.096 5.904 5 C -0.007 4.007 6 C -0.079 4.079 7 C -0.224 4.224 8 C 0.201 3.799 9 N -0.737 5.737 10 C 0.514 3.486 11 O -0.537 6.537 12 C -0.138 4.138 13 C -0.095 4.095 14 C 0.020 3.980 15 C -0.519 4.519 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.400 0.600 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 18.196 13.200 23.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 N -0.074 5.074 4 O 0.033 5.967 5 C -0.071 4.071 6 C -0.136 4.136 7 C -0.229 4.229 8 C 0.077 3.923 9 N -0.392 5.392 10 C 0.302 3.698 11 O -0.412 6.412 12 C -0.178 4.178 13 C -0.133 4.133 14 C -0.017 4.017 15 C -0.557 4.557 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.100 0.900 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.234 0.766 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.175 18.921 13.692 24.158 hybrid contribution -0.268 -1.309 -0.452 1.411 sum 5.906 17.612 13.241 22.812 Atomic orbital electron populations 1.20227 0.85708 1.04153 1.03620 1.23507 0.99068 0.88222 1.01591 1.73874 0.89197 1.23804 1.20526 1.84835 1.21746 1.22394 1.67719 1.24415 0.98301 0.83869 1.00542 1.20436 0.89816 0.98708 1.04625 1.20987 0.91910 0.97286 1.12673 1.19296 1.02137 0.86072 0.84786 1.46222 1.72852 1.12427 1.07662 1.21297 0.74998 0.80632 0.92858 1.90686 1.49125 1.54648 1.46769 1.21850 1.03586 1.01000 0.91357 1.21450 1.00857 0.90139 1.00853 1.19128 0.97018 0.95880 0.89635 1.21238 1.46318 0.95864 0.92308 0.92618 1.25019 0.95588 0.98224 0.95656 1.69950 1.50035 1.36552 0.97228 0.86652 0.79169 0.85324 0.76836 1.20221 1.21338 1.20224 0.89963 0.90338 0.89654 0.88883 0.89594 0.88709 0.90301 0.90330 0.76601 0.89342 0.89331 0.92676 0.92692 0.96621 0.96619 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.39 36.01 0.37 -0.25 16 2 C 0.04 0.36 7.33 -82.10 -0.60 -0.24 16 3 N -0.37 -4.23 12.07 33.42 0.40 -3.82 16 4 O 0.10 0.99 11.20 17.17 0.19 1.19 16 5 C -0.01 -0.06 7.49 -35.31 -0.26 -0.32 16 6 C -0.08 -0.41 10.30 36.00 0.37 -0.04 16 7 C -0.22 -2.09 5.69 -104.42 -0.59 -2.69 16 8 C 0.20 2.02 6.00 -5.20 -0.03 1.98 16 9 N -0.74 -8.12 5.55 -61.47 -0.34 -8.46 16 10 C 0.51 7.77 7.83 -10.98 -0.09 7.68 16 11 O -0.54 -10.21 15.98 5.56 0.09 -10.12 16 12 C -0.14 -2.20 5.70 -27.89 -0.16 -2.35 16 13 C -0.09 -2.01 4.44 -26.73 -0.12 -2.13 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.46 7.43 -51.93 -0.39 0.07 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.78 7.44 -51.93 -0.39 0.39 16 31 H 0.40 3.63 8.46 -40.82 -0.35 3.28 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 330.66 15.07 4.98 4.98 Total: -1.00 -34.03 330.66 -6.35 -40.37 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -5.73 Total: -3.05 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -1.66 Total: -11.71 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.80 Total: -38.56 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.28 Total: -8.94 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.03 -6.35 -40.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593967524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.539 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds