Wall clock time and date at job start Mon Mar 30 2020 04:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30167 * 126.80132 * 2 1 4 4 O 1.20923 * 111.60489 * 180.02562 * 3 2 1 5 5 C 1.34044 * 111.56491 * 359.76525 * 4 3 2 6 6 C 1.50693 * 126.77475 * 180.28294 * 5 4 3 7 7 C 1.35454 * 106.44535 * 0.37890 * 5 4 3 8 8 C 1.50698 * 128.00315 * 179.90968 * 7 5 4 9 9 N 1.46493 * 109.47082 * 269.67559 * 8 7 5 10 10 C 1.34784 * 119.99864 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99649 * 359.72839 * 10 9 8 12 12 C 1.50694 * 119.99988 * 179.72721 * 10 9 8 13 13 C 1.53001 * 109.47168 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47355 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46978 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00135 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00095 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99892 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46884 * 60.00562 * 19 17 15 21 21 H 1.48505 * 109.46918 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47272 * 300.00241 * 19 17 15 23 23 H 1.09004 * 109.46754 * 269.97369 * 1 2 3 24 24 H 1.08997 * 109.47178 * 29.97379 * 1 2 3 25 25 H 1.08997 * 109.46971 * 149.97446 * 1 2 3 26 26 H 1.09002 * 109.47694 * 270.11071 * 6 5 4 27 27 H 1.08997 * 109.47505 * 30.11485 * 6 5 4 28 28 H 1.08999 * 109.47070 * 150.11494 * 6 5 4 29 29 H 1.09007 * 109.46606 * 149.67808 * 8 7 5 30 30 H 1.09006 * 109.47204 * 29.68266 * 8 7 5 31 31 H 0.97000 * 120.00740 * 359.72841 * 9 8 7 32 32 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 33 33 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 34 34 H 1.09000 * 109.47339 * 299.99895 * 13 12 10 35 35 H 1.09002 * 109.46926 * 60.00175 * 13 12 10 36 36 H 1.09000 * 109.46966 * 300.00313 * 14 13 12 37 37 H 1.09002 * 109.46807 * 60.00291 * 14 13 12 38 38 H 0.97004 * 120.00461 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 -0.0005 5 6 3.6025 -0.6069 0.0042 6 6 4.9021 -1.3695 0.0111 7 6 2.3539 -1.1321 -0.0007 8 6 1.9591 -2.5864 -0.0003 9 7 1.8299 -3.0577 -1.3813 10 6 1.4820 -4.3364 -1.6272 11 8 1.2807 -5.0981 -0.7051 12 6 1.3430 -4.8196 -3.0478 13 6 0.9435 -6.2965 -3.0474 14 6 0.8018 -6.7870 -4.4897 15 6 0.4088 -8.2418 -4.4893 16 1 0.2733 -8.7643 -3.5538 17 6 0.2213 -8.9056 -5.6831 18 7 0.3859 -8.2693 -6.8222 19 14 -0.2650 -10.7092 -5.6826 20 1 -1.5600 -10.8724 -4.9742 21 1 -0.4027 -11.1852 -7.0825 22 1 0.7813 -11.5039 -4.9907 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8897 -0.5142 26 1 5.2202 -1.5550 -1.0149 27 1 5.6637 -0.7852 0.5275 28 1 4.7628 -2.3203 0.5256 29 1 1.0054 -2.7038 0.5145 30 1 2.7233 -3.1703 0.5130 31 1 1.9905 -2.4485 -2.1188 32 1 0.5763 -4.2356 -3.5569 33 1 2.2944 -4.7012 -3.5666 34 1 1.7104 -6.8803 -2.5385 35 1 -0.0077 -6.4154 -2.5286 36 1 0.0346 -6.2031 -4.9983 37 1 1.7528 -6.6680 -5.0090 38 1 0.2537 -8.7362 -7.6622 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593967524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:47 Heat of formation + Delta-G solvation = -28.133602 kcal Electronic energy + Delta-G solvation = -19324.927306 eV Core-core repulsion = 16168.889229 eV Total energy + Delta-G solvation = -3156.038077 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.02074 -40.72692 -37.18801 -36.07187 -35.10668 -34.23557 -33.92613 -30.34154 -29.66847 -29.01872 -27.43420 -25.50148 -22.85900 -22.20299 -21.29263 -21.09373 -18.77646 -18.69446 -18.13546 -17.57089 -16.83953 -16.78086 -16.46483 -15.65973 -15.16777 -14.82429 -14.62214 -14.34403 -14.20597 -14.00555 -13.86004 -13.72364 -13.59355 -13.40240 -13.10839 -13.01570 -12.57496 -12.48770 -12.40430 -12.01644 -11.51972 -11.44888 -11.27578 -11.12131 -10.75089 -10.52324 -10.22190 -10.12539 -8.18576 -6.28461 0.36429 1.00711 1.41053 1.43754 1.51808 1.67793 2.07336 2.37839 2.45346 3.12635 3.14510 3.44174 3.68840 3.87004 3.96331 4.26076 4.30540 4.32529 4.50294 4.59677 4.60799 4.65361 4.72719 4.78474 4.86083 4.88462 5.00942 5.12186 5.14331 5.21254 5.22333 5.39060 5.56899 5.78566 5.89498 6.29424 6.53690 6.87389 7.22481 7.26521 7.40235 8.92709 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.038963 B = 0.002901 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.460238 B = 9649.168215 C = 9778.432986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.031 3.969 3 N -0.396 5.396 4 O 0.086 5.914 5 C 0.007 3.993 6 C -0.080 4.080 7 C -0.235 4.235 8 C 0.206 3.794 9 N -0.716 5.716 10 C 0.521 3.479 11 O -0.580 6.580 12 C -0.131 4.131 13 C -0.082 4.082 14 C 0.025 3.975 15 C -0.548 4.548 16 H 0.052 0.948 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.961 3.039 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.269 1.269 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.413 0.587 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.000 1.000 37 H 0.001 0.999 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.061 18.289 13.587 23.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 N -0.105 5.105 4 O 0.025 5.975 5 C -0.058 4.058 6 C -0.137 4.137 7 C -0.240 4.240 8 C 0.083 3.917 9 N -0.369 5.369 10 C 0.310 3.690 11 O -0.459 6.459 12 C -0.171 4.171 13 C -0.121 4.121 14 C -0.012 4.012 15 C -0.586 4.586 16 H 0.071 0.929 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.785 3.215 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.194 1.194 23 H 0.111 0.889 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.249 0.751 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.018 0.982 37 H 0.019 0.981 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.724 19.065 14.077 24.634 hybrid contribution -0.394 -1.282 -0.571 1.458 sum 6.330 17.782 13.505 23.209 Atomic orbital electron populations 1.20307 0.84545 1.04474 1.04409 1.23893 1.00015 0.88240 1.00726 1.73876 0.89734 1.24703 1.22183 1.84809 1.21434 1.23279 1.67958 1.24979 0.99293 0.83278 0.98238 1.20643 0.88633 0.98721 1.05716 1.20868 0.92259 0.96609 1.14256 1.19272 1.02205 0.86496 0.83746 1.45979 1.70919 1.11126 1.08879 1.20966 0.74829 0.81482 0.91757 1.90680 1.51487 1.56098 1.47650 1.21677 1.05123 0.97536 0.92725 1.21162 0.99909 0.93683 0.97310 1.19024 0.95430 0.94623 0.92115 1.21688 1.46806 0.97634 0.92472 0.92949 1.25903 0.95344 1.03043 0.95206 1.70058 1.50649 1.38474 0.97840 0.85570 0.79111 0.79545 0.77257 1.19435 1.20491 1.19364 0.88928 0.89988 0.89305 0.87653 0.87868 0.88040 0.90678 0.89816 0.75107 0.87600 0.87336 0.93869 0.94056 0.98193 0.98065 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.39 71.24 0.74 -0.43 16 2 C 0.03 0.59 7.33 43.58 0.32 0.91 16 3 N -0.40 -8.78 12.07 -49.56 -0.60 -9.38 16 4 O 0.09 1.67 11.20 71.59 0.80 2.47 16 5 C 0.01 0.10 7.49 25.04 0.19 0.29 16 6 C -0.08 -0.63 10.30 71.23 0.73 0.11 16 7 C -0.24 -4.00 5.69 -19.74 -0.11 -4.12 16 8 C 0.21 3.78 6.00 85.63 0.51 4.29 16 9 N -0.72 -14.29 5.55 -466.78 -2.59 -16.88 16 10 C 0.52 15.02 7.83 87.65 0.69 15.71 16 11 O -0.58 -21.71 15.98 -3.04 -0.05 -21.76 16 12 C -0.13 -3.99 5.70 29.85 0.17 -3.82 16 13 C -0.08 -3.51 4.44 30.59 0.14 -3.37 16 14 C 0.03 1.31 4.97 29.85 0.15 1.46 16 15 C -0.55 -31.91 9.11 25.60 0.23 -31.68 16 16 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 17 C 0.00 0.17 5.46 84.66 0.46 0.63 16 18 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 19 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 25 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.10 0.71 7.43 -2.39 -0.02 0.69 16 29 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.08 1.50 7.44 -2.38 -0.02 1.49 16 31 H 0.41 6.41 8.46 -92.71 -0.78 5.63 16 32 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.04 1.91 8.10 -2.39 -0.02 1.89 16 35 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 36 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -73.34 330.66 4.37 -68.97 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 0.27 Total: 5.68 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.22 Total: -20.01 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -2.90 Total: -82.17 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.75 Total: -19.29 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -73.34 4.37 -68.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593967524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.833 kcal (2) G-P(sol) polarization free energy of solvation -73.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds