Wall clock time and date at job start Mon Mar 30 2020 05:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47025 * 2 1 4 4 C 1.41380 * 126.80347 * 124.99658 * 3 2 1 5 5 C 1.35451 * 103.98649 * 179.77327 * 4 3 2 6 6 C 1.50706 * 126.77668 * 180.22754 * 5 4 3 7 7 N 1.46493 * 109.47063 * 90.00325 * 6 5 4 8 8 C 1.34774 * 119.99843 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00439 * 0.02562 * 8 7 6 10 10 C 1.50702 * 120.00137 * 180.02562 * 8 7 6 11 11 C 1.53001 * 109.47613 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47591 * 179.97438 * 11 10 8 13 13 C 1.50696 * 109.47338 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00095 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99885 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00234 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 120.00062 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46850 * 89.99794 * 17 15 13 19 19 H 1.48498 * 109.47423 * 209.99841 * 17 15 13 20 20 H 1.48504 * 109.46953 * 330.00060 * 17 15 13 21 21 O 1.34041 * 106.44823 * 0.22995 * 5 4 3 22 22 N 1.20916 * 111.56681 * 359.97438 * 21 5 4 23 23 H 1.08999 * 109.47521 * 299.99480 * 1 2 3 24 24 H 1.08995 * 109.47888 * 60.00117 * 1 2 3 25 25 H 1.09007 * 109.47304 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46889 * 240.00604 * 2 1 3 27 27 H 1.08997 * 109.47170 * 120.00069 * 2 1 3 28 28 H 1.08002 * 128.00820 * 0.04548 * 4 3 2 29 29 H 1.09003 * 109.46799 * 210.00794 * 6 5 4 30 30 H 1.09005 * 109.46817 * 330.00360 * 6 5 4 31 31 H 0.96998 * 120.00406 * 359.97438 * 7 6 5 32 32 H 1.09008 * 109.47197 * 300.00453 * 10 8 7 33 33 H 1.08997 * 109.47214 * 59.99629 * 10 8 7 34 34 H 1.09003 * 109.46404 * 300.00289 * 11 10 8 35 35 H 1.08996 * 109.46980 * 59.99431 * 11 10 8 36 36 H 1.09003 * 109.46772 * 299.99848 * 12 11 10 37 37 H 1.09006 * 109.47015 * 59.99348 * 12 11 10 38 38 H 0.97002 * 119.99995 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9267 2.0029 0.9273 5 6 3.0628 3.2790 0.4941 6 6 3.9140 4.3567 1.1148 7 7 5.2533 4.3230 0.5223 8 6 6.1912 5.2026 0.9263 9 8 5.9265 6.0217 1.7806 10 6 7.5688 5.1684 0.3164 11 6 8.4331 6.2623 0.9467 12 6 9.8319 6.2272 0.3280 13 6 10.6829 7.3051 0.9483 14 1 10.2674 7.9510 1.7077 15 6 11.9915 7.4674 0.5458 16 7 12.4973 6.6812 -0.3793 17 14 13.0462 8.8041 1.3143 18 1 13.7417 8.2605 2.5084 19 1 14.0513 9.2711 0.3259 20 1 12.1839 9.9433 1.7194 21 8 2.2910 3.3942 -0.5958 22 7 1.7265 2.3561 -0.8523 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.3965 1.5367 1.7808 29 1 3.4594 5.3301 0.9304 30 1 3.9876 4.1877 2.1892 31 1 5.4652 3.6677 -0.1607 32 1 8.0238 4.1951 0.5008 33 1 7.4949 5.3371 -0.7579 34 1 7.9782 7.2357 0.7626 35 1 8.5069 6.0932 2.0209 36 1 10.2864 5.2538 0.5125 37 1 9.7583 6.3960 -0.7464 38 1 13.4179 6.7957 -0.6628 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593985244.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:30 Heat of formation + Delta-G solvation = -4.703565 kcal Electronic energy + Delta-G solvation = -18849.704379 eV Core-core repulsion = 15694.682305 eV Total energy + Delta-G solvation = -3155.022074 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.29511 -39.57097 -35.90183 -35.51857 -34.17845 -32.51942 -31.97812 -31.42266 -28.41196 -26.59028 -24.82695 -23.70876 -23.26973 -20.76386 -20.31750 -19.72573 -17.96662 -17.84120 -16.75291 -16.12984 -15.81031 -15.64436 -15.08610 -14.80660 -14.42699 -14.21984 -14.03398 -13.53160 -13.31889 -12.88307 -12.64686 -12.27175 -12.01190 -11.99509 -11.81366 -11.37774 -11.27234 -10.80603 -10.62546 -10.53578 -10.40404 -10.11087 -9.68877 -9.65321 -9.27080 -9.22222 -9.01904 -8.31735 -5.97389 -3.98813 0.97466 1.82778 2.62858 2.82249 3.31094 3.35157 3.41056 3.45930 3.76165 3.96110 4.49548 4.53797 4.69998 4.75681 4.75939 4.93175 5.03201 5.22447 5.30791 5.38691 5.38932 5.39274 5.55638 5.61988 5.68887 5.69690 5.78609 6.18674 6.26324 6.71547 6.91777 7.15460 7.43225 7.71016 7.83542 7.89706 8.03190 8.31877 8.47028 9.08328 9.65172 11.14058 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.056926 B = 0.002482 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.745147 B =11280.095464 C =11497.337157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.046 4.046 3 C 0.015 3.985 4 C -0.209 4.209 5 C -0.045 4.045 6 C 0.202 3.798 7 N -0.739 5.739 8 C 0.517 3.483 9 O -0.533 6.533 10 C -0.137 4.137 11 C -0.095 4.095 12 C 0.020 3.980 13 C -0.518 4.518 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 O 0.108 5.892 22 N -0.357 5.357 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.175 0.825 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.403 0.597 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.115 -14.283 0.794 26.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.231 4.231 5 C -0.109 4.109 6 C 0.077 3.923 7 N -0.395 5.395 8 C 0.305 3.695 9 O -0.409 6.409 10 C -0.177 4.177 11 C -0.134 4.134 12 C -0.017 4.017 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.198 1.198 21 O 0.039 5.961 22 N -0.060 5.060 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.192 0.808 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.238 0.762 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.949 -13.649 0.246 26.702 hybrid contribution 1.148 0.039 0.683 1.336 sum -21.801 -13.610 0.929 25.717 Atomic orbital electron populations 1.21737 0.94008 1.02290 1.02640 1.19973 0.96652 0.87901 1.03828 1.23656 0.98795 0.98422 0.93446 1.22562 1.03205 0.93584 1.03744 1.24461 0.98216 0.97601 0.90633 1.19561 0.80810 0.94983 0.96919 1.46183 1.11038 1.37990 1.44276 1.21328 0.86910 0.79288 0.81930 1.90698 1.81254 1.37156 1.31763 1.21862 0.90698 1.03447 1.01720 1.21461 0.96573 0.95615 0.99703 1.19137 0.89423 0.97171 0.96002 1.21267 0.96284 1.16330 1.21715 0.92552 1.25028 0.98064 0.96311 0.95175 1.69963 1.14835 1.38678 1.30254 0.86588 0.80183 0.82256 0.78957 1.20691 1.21279 1.19831 1.84873 1.44370 1.29572 1.37240 1.73849 1.16652 0.93227 1.22263 0.92477 0.92059 0.91686 0.89777 0.89452 0.80787 0.89086 0.88088 0.76245 0.89190 0.89139 0.92603 0.92636 0.96596 0.96568 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.88 37.16 0.37 -0.52 16 2 C -0.05 -0.28 6.53 -27.89 -0.18 -0.46 16 3 C 0.02 0.14 6.59 -82.10 -0.54 -0.40 16 4 C -0.21 -1.67 11.05 -39.38 -0.44 -2.10 16 5 C -0.05 -0.40 6.86 -35.30 -0.24 -0.65 16 6 C 0.20 1.88 6.24 -5.19 -0.03 1.85 16 7 N -0.74 -7.92 5.55 -61.47 -0.34 -8.26 16 8 C 0.52 7.70 7.83 -10.99 -0.09 7.61 16 9 O -0.53 -9.98 15.98 5.56 0.09 -9.89 16 10 C -0.14 -2.16 5.70 -27.88 -0.16 -2.32 16 11 C -0.10 -2.01 4.44 -26.73 -0.12 -2.13 16 12 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 13 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 17 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 O 0.11 1.17 11.20 17.17 0.19 1.36 16 22 N -0.36 -3.97 12.06 33.43 0.40 -3.57 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.40 3.49 8.46 -40.82 -0.35 3.14 16 32 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 33 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 35 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 331.92 15.07 5.00 5.00 Total: -1.00 -33.63 331.92 -6.72 -40.35 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -5.80 Total: -3.19 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -1.98 Total: -12.46 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.80 Total: -38.10 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.28 Total: -8.53 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.63 -6.72 -40.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593985244.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.649 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds