Wall clock time and date at job start Mon Mar 30 2020 05:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47025 * 2 1 4 4 C 1.41380 * 126.80347 * 124.99658 * 3 2 1 5 5 C 1.35451 * 103.98649 * 179.77327 * 4 3 2 6 6 C 1.50706 * 126.77668 * 180.22754 * 5 4 3 7 7 N 1.46493 * 109.47063 * 90.00325 * 6 5 4 8 8 C 1.34774 * 119.99843 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00439 * 0.02562 * 8 7 6 10 10 C 1.50702 * 120.00137 * 180.02562 * 8 7 6 11 11 C 1.53001 * 109.47613 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47591 * 179.97438 * 11 10 8 13 13 C 1.50696 * 109.47338 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00095 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99885 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00234 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 120.00062 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46850 * 89.99794 * 17 15 13 19 19 H 1.48498 * 109.47423 * 209.99841 * 17 15 13 20 20 H 1.48504 * 109.46953 * 330.00060 * 17 15 13 21 21 O 1.34041 * 106.44823 * 0.22995 * 5 4 3 22 22 N 1.20916 * 111.56681 * 359.97438 * 21 5 4 23 23 H 1.08999 * 109.47521 * 299.99480 * 1 2 3 24 24 H 1.08995 * 109.47888 * 60.00117 * 1 2 3 25 25 H 1.09007 * 109.47304 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46889 * 240.00604 * 2 1 3 27 27 H 1.08997 * 109.47170 * 120.00069 * 2 1 3 28 28 H 1.08002 * 128.00820 * 0.04548 * 4 3 2 29 29 H 1.09003 * 109.46799 * 210.00794 * 6 5 4 30 30 H 1.09005 * 109.46817 * 330.00360 * 6 5 4 31 31 H 0.96998 * 120.00406 * 359.97438 * 7 6 5 32 32 H 1.09008 * 109.47197 * 300.00453 * 10 8 7 33 33 H 1.08997 * 109.47214 * 59.99629 * 10 8 7 34 34 H 1.09003 * 109.46404 * 300.00289 * 11 10 8 35 35 H 1.08996 * 109.46980 * 59.99431 * 11 10 8 36 36 H 1.09003 * 109.46772 * 299.99848 * 12 11 10 37 37 H 1.09006 * 109.47015 * 59.99348 * 12 11 10 38 38 H 0.97002 * 119.99995 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9267 2.0029 0.9273 5 6 3.0628 3.2790 0.4941 6 6 3.9140 4.3567 1.1148 7 7 5.2533 4.3230 0.5223 8 6 6.1912 5.2026 0.9263 9 8 5.9265 6.0217 1.7806 10 6 7.5688 5.1684 0.3164 11 6 8.4331 6.2623 0.9467 12 6 9.8319 6.2272 0.3280 13 6 10.6829 7.3051 0.9483 14 1 10.2674 7.9510 1.7077 15 6 11.9915 7.4674 0.5458 16 7 12.4973 6.6812 -0.3793 17 14 13.0462 8.8041 1.3143 18 1 13.7417 8.2605 2.5084 19 1 14.0513 9.2711 0.3259 20 1 12.1839 9.9433 1.7194 21 8 2.2910 3.3942 -0.5958 22 7 1.7265 2.3561 -0.8523 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.3965 1.5367 1.7808 29 1 3.4594 5.3301 0.9304 30 1 3.9876 4.1877 2.1892 31 1 5.4652 3.6677 -0.1607 32 1 8.0238 4.1951 0.5008 33 1 7.4949 5.3371 -0.7579 34 1 7.9782 7.2357 0.7626 35 1 8.5069 6.0932 2.0209 36 1 10.2864 5.2538 0.5125 37 1 9.7583 6.3960 -0.7464 38 1 13.4179 6.7957 -0.6628 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593985244.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:30 Heat of formation + Delta-G solvation = -26.595891 kcal Electronic energy + Delta-G solvation = -18850.653702 eV Core-core repulsion = 15694.682305 eV Total energy + Delta-G solvation = -3155.971396 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.00732 -40.76016 -36.61276 -36.46034 -35.98559 -34.03798 -33.17617 -32.10212 -29.98446 -27.78811 -25.60482 -25.23690 -24.01225 -22.31865 -21.38344 -20.74479 -18.84371 -18.69823 -18.31575 -17.62296 -16.89374 -16.76525 -16.46708 -15.75371 -15.51229 -15.19023 -14.86651 -14.58284 -14.38885 -14.19067 -13.77762 -13.71852 -13.32670 -13.05489 -12.62633 -12.56423 -12.49336 -12.47947 -12.38163 -11.86378 -11.51913 -11.45934 -11.26437 -11.06693 -10.97766 -10.52547 -10.45141 -10.21514 -8.18627 -6.28270 0.25694 1.17773 1.41027 1.41961 1.53500 1.63681 1.90096 2.35689 2.44324 3.14433 3.18478 3.30694 3.86138 3.93973 4.09571 4.21048 4.26089 4.28626 4.31060 4.39933 4.52655 4.66999 4.74765 4.84630 4.97731 5.00944 5.06509 5.08661 5.14201 5.20988 5.29938 5.31561 5.57168 5.78724 5.89708 6.29301 6.45684 6.87715 7.20066 7.20670 7.40319 8.92766 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.056926 B = 0.002482 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.745147 B =11280.095464 C =11497.337157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.013 3.987 4 C -0.198 4.198 5 C -0.049 4.049 6 C 0.205 3.795 7 N -0.719 5.719 8 C 0.524 3.476 9 O -0.576 6.576 10 C -0.131 4.131 11 C -0.083 4.083 12 C 0.024 3.976 13 C -0.546 4.546 14 H 0.052 0.948 15 C 0.001 3.999 16 N -0.930 5.930 17 Si 0.962 3.038 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.268 1.268 21 O 0.087 5.913 22 N -0.386 5.386 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.201 0.799 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.416 0.584 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.002 0.998 37 H 0.000 1.000 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.463 -15.365 1.488 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.146 4.146 4 C -0.220 4.220 5 C -0.113 4.113 6 C 0.081 3.919 7 N -0.374 5.374 8 C 0.313 3.687 9 O -0.455 6.455 10 C -0.170 4.170 11 C -0.122 4.122 12 C -0.013 4.013 13 C -0.584 4.584 14 H 0.071 0.929 15 C -0.197 4.197 16 N -0.570 5.570 17 Si 0.786 3.214 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.192 1.192 21 O 0.022 5.978 22 N -0.092 5.092 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.107 0.893 27 H 0.129 0.871 28 H 0.218 0.782 29 H 0.105 0.895 30 H 0.131 0.869 31 H 0.253 0.747 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.018 0.982 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.316 -14.756 0.919 27.608 hybrid contribution 1.209 0.302 0.441 1.322 sum -22.107 -14.454 1.360 26.448 Atomic orbital electron populations 1.21719 0.94005 1.03183 1.01568 1.20151 0.96632 0.86494 1.05236 1.24206 0.98299 0.99211 0.92863 1.22914 1.02284 0.92902 1.03869 1.24407 0.98349 0.97912 0.90592 1.19594 0.79748 0.95116 0.97435 1.45921 1.10930 1.36817 1.43739 1.20973 0.87051 0.79366 0.81355 1.90691 1.81915 1.39123 1.33783 1.21687 0.90774 1.02365 1.02217 1.21172 0.94917 0.97057 0.99008 1.19036 0.91690 0.95530 0.95045 1.21705 0.97339 1.17274 1.22048 0.92938 1.25919 0.99444 0.98699 0.95613 1.70069 1.15405 1.40198 1.31328 0.85501 0.78312 0.79262 0.78306 1.19701 1.20477 1.19248 1.84842 1.45048 1.29851 1.38082 1.73861 1.17835 0.93860 1.23639 0.92833 0.93830 0.89817 0.89292 0.87055 0.78166 0.89473 0.86904 0.74726 0.87113 0.87484 0.94008 0.93739 0.97998 0.98182 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.88 71.98 0.71 -0.81 16 2 C -0.05 -0.48 6.53 29.85 0.19 -0.29 16 3 C 0.01 0.20 6.59 43.57 0.29 0.49 16 4 C -0.20 -2.66 11.05 22.40 0.25 -2.42 16 5 C -0.05 -0.80 6.86 25.04 0.17 -0.63 16 6 C 0.21 3.49 6.24 85.64 0.53 4.03 16 7 N -0.72 -14.03 5.55 -466.79 -2.59 -16.62 16 8 C 0.52 14.95 7.83 87.66 0.69 15.64 16 9 O -0.58 -21.30 15.98 -3.04 -0.05 -21.35 16 10 C -0.13 -3.96 5.70 29.85 0.17 -3.79 16 11 C -0.08 -3.54 4.44 30.59 0.14 -3.40 16 12 C 0.02 1.26 4.97 29.85 0.15 1.41 16 13 C -0.55 -31.80 9.11 25.60 0.23 -31.56 16 14 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 15 C 0.00 0.06 5.46 84.65 0.46 0.52 16 16 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 17 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 O 0.09 1.84 11.20 71.63 0.80 2.64 16 22 N -0.39 -8.34 12.06 -49.54 -0.60 -8.93 16 23 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 24 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.20 1.52 8.06 -2.91 -0.02 1.49 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.42 6.18 8.46 -92.71 -0.78 5.39 16 32 H 0.11 2.91 8.14 -2.38 -0.02 2.89 16 33 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 35 H 0.04 1.96 8.10 -2.39 -0.02 1.94 16 36 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 38 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -73.08 331.92 4.13 -68.95 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 0.27 Total: 5.08 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 3.98 Total: -20.81 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -2.90 Total: -81.52 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.75 Total: -18.70 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.08 4.13 -68.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593985244.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.358 kcal (2) G-P(sol) polarization free energy of solvation -73.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds