Wall clock time and date at job start Mon Mar 30 2020 05:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46959 * 2 1 4 4 C 1.34332 * 126.44280 * 90.00343 * 3 2 1 5 5 N 1.34471 * 107.66856 * 180.02562 * 4 3 2 6 6 C 1.30253 * 108.70602 * 0.02562 * 5 4 3 7 7 C 1.50696 * 125.62276 * 180.26292 * 6 5 4 8 8 N 1.46502 * 109.47064 * 89.69084 * 7 6 5 9 9 C 1.34780 * 120.00027 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99525 * 0.02562 * 9 8 7 11 11 C 1.50693 * 120.00167 * 180.02562 * 9 8 7 12 12 C 1.53002 * 109.47449 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47363 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.47119 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99997 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00106 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00125 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00375 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47322 * 89.99481 * 18 16 14 20 20 H 1.48496 * 109.47300 * 210.00158 * 18 16 14 21 21 H 1.48504 * 109.46681 * 329.99752 * 18 16 14 22 22 O 1.33974 * 108.75653 * 359.97438 * 6 5 4 23 23 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46637 * 299.99324 * 1 2 3 25 25 H 1.09000 * 109.47334 * 59.99698 * 1 2 3 26 26 H 1.08999 * 109.46637 * 240.00676 * 2 1 3 27 27 H 1.08991 * 109.47564 * 120.00414 * 2 1 3 28 28 H 1.08005 * 126.16232 * 0.02562 * 4 3 2 29 29 H 1.09003 * 109.46949 * 209.69285 * 7 6 5 30 30 H 1.09000 * 109.47067 * 329.69047 * 7 6 5 31 31 H 0.96998 * 120.00435 * 0.02562 * 8 7 6 32 32 H 1.09003 * 109.47268 * 300.00224 * 11 9 8 33 33 H 1.09000 * 109.47202 * 60.00265 * 11 9 8 34 34 H 1.09003 * 109.46709 * 300.00126 * 12 11 9 35 35 H 1.09000 * 109.47062 * 59.99739 * 12 11 9 36 36 H 1.08993 * 109.46860 * 300.00084 * 13 12 11 37 37 H 1.08995 * 109.46804 * 60.00017 * 13 12 11 38 38 H 0.96998 * 119.99944 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1731 1.0806 5 7 2.7221 3.3737 0.6479 6 6 2.7207 3.3726 -0.6547 7 6 3.1331 4.5249 -1.5339 8 7 4.5684 4.4364 -1.8137 9 6 5.1630 5.3670 -2.5864 10 8 4.5099 6.2779 -3.0495 11 6 6.6392 5.2756 -2.8747 12 6 7.0580 6.4456 -3.7673 13 6 8.5570 6.3532 -4.0595 14 6 8.9693 7.5053 -4.9391 15 1 8.2354 8.2307 -5.2582 16 6 10.2830 7.6328 -5.3374 17 7 11.1763 6.7487 -4.9502 18 14 10.7943 9.0612 -6.4272 19 1 11.1996 10.2107 -5.5789 20 1 11.9372 8.6485 -7.2806 21 1 9.6521 9.4601 -7.2885 22 8 2.2982 2.1758 -1.0840 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8898 28 1 2.1912 1.8686 2.1113 29 1 2.5770 4.4844 -2.4705 30 1 2.9194 5.4648 -1.0249 31 1 5.0907 3.7076 -1.4436 32 1 7.1956 5.3162 -1.9383 33 1 6.8526 4.3356 -3.3836 34 1 6.5017 6.4054 -4.7038 35 1 6.8448 7.3855 -3.2581 36 1 9.1129 6.3936 -3.1229 37 1 8.7706 5.4134 -4.5685 38 1 12.1007 6.8386 -5.2301 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594343506.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:47 Heat of formation + Delta-G solvation = -40.185021 kcal Electronic energy + Delta-G solvation = -18854.769925 eV Core-core repulsion = 15698.209259 eV Total energy + Delta-G solvation = -3156.560665 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.73715 -39.52871 -35.52790 -35.05367 -34.39646 -34.12833 -32.05559 -30.29569 -28.14168 -26.61515 -24.14912 -23.61297 -22.42169 -21.27412 -20.74394 -19.82244 -17.73399 -17.17700 -16.64442 -16.06946 -15.80130 -15.70852 -15.19225 -14.93839 -14.41601 -14.01534 -13.67431 -13.65953 -13.30229 -13.07832 -12.68766 -12.25703 -12.23833 -11.82420 -11.76797 -11.67054 -11.33012 -10.85372 -10.79130 -10.60137 -10.52200 -9.84232 -9.66786 -9.33121 -9.21064 -9.11772 -8.96498 -8.30218 -5.95900 -3.97244 0.95493 2.14736 2.25275 2.84418 3.29098 3.36405 3.42109 3.47009 3.63853 4.22232 4.45648 4.50951 4.59956 4.66619 4.84179 4.98533 5.09726 5.24335 5.28329 5.32010 5.40168 5.45042 5.61362 5.68491 5.71491 5.72144 5.89195 6.19483 6.27785 6.73913 6.93979 7.17578 7.34309 7.44707 7.72838 7.85531 8.04827 8.33541 8.48697 9.09897 9.66643 11.15597 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.053085 B = 0.002509 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.331908 B =11157.218853 C =11328.287225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.040 4.040 3 C -0.037 4.037 4 C -0.043 4.043 5 N -0.461 5.461 6 C 0.172 3.828 7 C 0.221 3.779 8 N -0.738 5.738 9 C 0.519 3.481 10 O -0.533 6.533 11 C -0.137 4.137 12 C -0.095 4.095 13 C 0.020 3.980 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 O -0.194 6.194 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.185 0.815 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.403 0.597 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.116 -15.833 12.214 28.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.077 4.077 3 C -0.090 4.090 4 C -0.182 4.182 5 N -0.190 5.190 6 C -0.035 4.035 7 C 0.096 3.904 8 N -0.394 5.394 9 C 0.307 3.693 10 O -0.408 6.408 11 C -0.177 4.177 12 C -0.134 4.134 13 C -0.017 4.017 14 C -0.556 4.556 15 H 0.075 0.925 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 O -0.080 6.080 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.202 0.798 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.238 0.762 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.242 -14.677 12.146 27.797 hybrid contribution 0.393 -0.306 -0.597 0.778 sum -19.849 -14.983 11.548 27.420 Atomic orbital electron populations 1.21811 0.93517 1.02737 1.02835 1.20110 0.96593 0.86311 1.04710 1.23614 1.04659 0.96227 0.84549 1.23134 1.04811 0.89730 1.00499 1.70484 1.16997 1.22497 1.09042 1.26150 1.00694 0.86346 0.90307 1.19445 0.83349 0.90780 0.96816 1.46139 1.08110 1.30916 1.54229 1.21322 0.91086 0.80432 0.76447 1.90697 1.66192 1.33363 1.50562 1.21859 0.89432 1.03395 1.02974 1.21466 0.99661 0.94737 0.97488 1.19135 0.88677 0.97196 0.96725 1.21271 0.93854 1.10181 1.30245 0.92546 1.25027 0.96781 0.96325 0.96460 1.69965 1.02471 1.35410 1.45913 0.86585 0.78141 0.82646 0.80594 1.20681 1.21294 1.19841 1.84428 1.63592 1.23378 1.36585 0.91191 0.92000 0.92182 0.89614 0.88266 0.79782 0.88642 0.87206 0.76230 0.89096 0.89170 0.92606 0.92574 0.96561 0.96583 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.89 37.16 0.37 -0.28 16 2 C -0.04 -0.19 6.49 -27.88 -0.18 -0.37 16 3 C -0.04 -0.31 6.64 -35.69 -0.24 -0.55 16 4 C -0.04 -0.39 11.80 -17.77 -0.21 -0.60 16 5 N -0.46 -5.45 11.29 -11.10 -0.13 -5.58 16 6 C 0.17 1.92 7.71 -12.95 -0.10 1.82 16 7 C 0.22 2.46 6.30 -5.19 -0.03 2.43 16 8 N -0.74 -8.94 5.55 -61.47 -0.34 -9.29 16 9 C 0.52 8.19 7.83 -10.99 -0.09 8.10 16 10 O -0.53 -10.35 15.98 5.56 0.09 -10.26 16 11 C -0.14 -2.24 5.70 -27.89 -0.16 -2.40 16 12 C -0.10 -2.05 4.44 -26.73 -0.12 -2.17 16 13 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 14 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 15 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 18 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 O -0.19 -2.07 10.78 5.35 0.06 -2.01 16 23 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 24 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.19 1.14 8.06 -52.48 -0.42 0.72 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.40 4.12 8.46 -40.82 -0.35 3.77 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -34.58 332.42 -6.70 -41.28 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -5.80 Total: -2.30 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -1.31 Total: -7.48 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.27 Total: -41.35 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.15 Total: -12.28 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.58 -6.70 -41.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594343506.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.099 kcal (2) G-P(sol) polarization free energy of solvation -34.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds