Wall clock time and date at job start Mon Mar 30 2020 05:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46959 * 2 1 4 4 C 1.34332 * 126.44280 * 90.00343 * 3 2 1 5 5 N 1.34471 * 107.66856 * 180.02562 * 4 3 2 6 6 C 1.30253 * 108.70602 * 0.02562 * 5 4 3 7 7 C 1.50696 * 125.62276 * 180.26292 * 6 5 4 8 8 N 1.46502 * 109.47064 * 89.69084 * 7 6 5 9 9 C 1.34780 * 120.00027 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99525 * 0.02562 * 9 8 7 11 11 C 1.50693 * 120.00167 * 180.02562 * 9 8 7 12 12 C 1.53002 * 109.47449 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47363 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.47119 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99997 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00106 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00125 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00375 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47322 * 89.99481 * 18 16 14 20 20 H 1.48496 * 109.47300 * 210.00158 * 18 16 14 21 21 H 1.48504 * 109.46681 * 329.99752 * 18 16 14 22 22 O 1.33974 * 108.75653 * 359.97438 * 6 5 4 23 23 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46637 * 299.99324 * 1 2 3 25 25 H 1.09000 * 109.47334 * 59.99698 * 1 2 3 26 26 H 1.08999 * 109.46637 * 240.00676 * 2 1 3 27 27 H 1.08991 * 109.47564 * 120.00414 * 2 1 3 28 28 H 1.08005 * 126.16232 * 0.02562 * 4 3 2 29 29 H 1.09003 * 109.46949 * 209.69285 * 7 6 5 30 30 H 1.09000 * 109.47067 * 329.69047 * 7 6 5 31 31 H 0.96998 * 120.00435 * 0.02562 * 8 7 6 32 32 H 1.09003 * 109.47268 * 300.00224 * 11 9 8 33 33 H 1.09000 * 109.47202 * 60.00265 * 11 9 8 34 34 H 1.09003 * 109.46709 * 300.00126 * 12 11 9 35 35 H 1.09000 * 109.47062 * 59.99739 * 12 11 9 36 36 H 1.08993 * 109.46860 * 300.00084 * 13 12 11 37 37 H 1.08995 * 109.46804 * 60.00017 * 13 12 11 38 38 H 0.96998 * 119.99944 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1731 1.0806 5 7 2.7221 3.3737 0.6479 6 6 2.7207 3.3726 -0.6547 7 6 3.1331 4.5249 -1.5339 8 7 4.5684 4.4364 -1.8137 9 6 5.1630 5.3670 -2.5864 10 8 4.5099 6.2779 -3.0495 11 6 6.6392 5.2756 -2.8747 12 6 7.0580 6.4456 -3.7673 13 6 8.5570 6.3532 -4.0595 14 6 8.9693 7.5053 -4.9391 15 1 8.2354 8.2307 -5.2582 16 6 10.2830 7.6328 -5.3374 17 7 11.1763 6.7487 -4.9502 18 14 10.7943 9.0612 -6.4272 19 1 11.1996 10.2107 -5.5789 20 1 11.9372 8.6485 -7.2806 21 1 9.6521 9.4601 -7.2885 22 8 2.2982 2.1758 -1.0840 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8898 28 1 2.1912 1.8686 2.1113 29 1 2.5770 4.4844 -2.4705 30 1 2.9194 5.4648 -1.0249 31 1 5.0907 3.7076 -1.4436 32 1 7.1956 5.3162 -1.9383 33 1 6.8526 4.3356 -3.3836 34 1 6.5017 6.4054 -4.7038 35 1 6.8448 7.3855 -3.2581 36 1 9.1129 6.3936 -3.1229 37 1 8.7706 5.4134 -4.5685 38 1 12.1007 6.8386 -5.2301 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594343506.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:46 Heat of formation + Delta-G solvation = -65.486939 kcal Electronic energy + Delta-G solvation = -18855.867098 eV Core-core repulsion = 15698.209259 eV Total energy + Delta-G solvation = -3157.657839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.49127 -40.80394 -36.57330 -36.03688 -35.79636 -35.00175 -34.02293 -31.28166 -29.64557 -27.70230 -25.59580 -24.55870 -23.21405 -22.34336 -21.97361 -21.30629 -18.86300 -18.26410 -18.05989 -17.45788 -16.90768 -16.80401 -16.47150 -15.96880 -15.49858 -15.25227 -14.90403 -14.40973 -14.23554 -14.16299 -13.98546 -13.74479 -13.46584 -13.06685 -12.63742 -12.60288 -12.52721 -12.49855 -12.39136 -12.13956 -11.57421 -11.53608 -11.47380 -11.26816 -10.92433 -10.53210 -10.31408 -9.81336 -8.19121 -6.28853 0.20043 1.38384 1.40656 1.41674 1.51760 1.53209 1.58544 2.26532 2.43162 2.86833 3.13883 3.65846 3.81698 3.97025 4.02354 4.19859 4.27191 4.28607 4.30888 4.37410 4.49973 4.67479 4.80985 4.87318 4.98499 4.98797 5.10746 5.14996 5.16245 5.20041 5.24796 5.31397 5.56147 5.77485 5.88655 6.28050 6.37498 6.58832 6.86898 7.13076 7.39676 8.92384 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.053085 B = 0.002509 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.331908 B =11157.218853 C =11328.287225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.039 4.039 3 C -0.030 4.030 4 C -0.057 4.057 5 N -0.483 5.483 6 C 0.158 3.842 7 C 0.224 3.776 8 N -0.719 5.719 9 C 0.526 3.474 10 O -0.574 6.574 11 C -0.129 4.129 12 C -0.083 4.083 13 C 0.024 3.976 14 C -0.546 4.546 15 H 0.052 0.948 16 C 0.001 3.999 17 N -0.930 5.930 18 Si 0.962 3.038 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.268 1.268 22 O -0.205 6.205 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.090 0.910 27 H 0.125 0.875 28 H 0.211 0.789 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.415 0.585 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.001 0.999 37 H 0.001 0.999 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.764 -16.958 12.790 29.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.076 4.076 3 C -0.083 4.083 4 C -0.196 4.196 5 N -0.213 5.213 6 C -0.048 4.048 7 C 0.100 3.900 8 N -0.374 5.374 9 C 0.314 3.686 10 O -0.453 6.453 11 C -0.169 4.169 12 C -0.121 4.121 13 C -0.013 4.013 14 C -0.584 4.584 15 H 0.071 0.929 16 C -0.197 4.197 17 N -0.570 5.570 18 Si 0.787 3.213 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.192 1.192 22 O -0.091 6.091 23 H 0.107 0.893 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.109 0.891 27 H 0.143 0.857 28 H 0.228 0.772 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.252 0.748 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.901 -15.843 12.745 29.160 hybrid contribution 0.550 -0.062 -0.705 0.896 sum -20.351 -15.905 12.041 28.498 Atomic orbital electron populations 1.21808 0.92987 1.03771 1.02145 1.20356 0.96891 0.84154 1.06223 1.24370 1.02992 0.97193 0.83771 1.23617 1.04985 0.89005 1.01982 1.70454 1.17464 1.23996 1.09408 1.25919 1.02021 0.86657 0.90161 1.19410 0.82377 0.91038 0.97209 1.45887 1.08826 1.30062 1.52674 1.21026 0.90591 0.80427 0.76539 1.90688 1.66863 1.35188 1.52523 1.21686 0.90335 1.01920 1.02948 1.21180 0.96464 0.96519 0.97982 1.19030 0.91412 0.95583 0.95241 1.21700 0.94361 1.11178 1.31149 0.92931 1.25924 0.96758 0.99164 0.97837 1.70070 1.02916 1.37113 1.46915 0.85490 0.77929 0.79166 0.78727 1.19767 1.20388 1.19210 1.84429 1.63683 1.23422 1.37597 0.89308 0.91931 0.93647 0.89139 0.85679 0.77235 0.88079 0.87463 0.74849 0.87304 0.87146 0.93760 0.93847 0.98096 0.98026 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 71.98 0.71 -0.24 16 2 C -0.04 -0.28 6.49 29.85 0.19 -0.09 16 3 C -0.03 -0.45 6.64 24.79 0.16 -0.29 16 4 C -0.06 -0.95 11.80 83.40 0.98 0.03 16 5 N -0.48 -10.95 11.29 -303.82 -3.43 -14.38 16 6 C 0.16 3.42 7.71 88.34 0.68 4.10 16 7 C 0.22 4.87 6.30 85.63 0.54 5.41 16 8 N -0.72 -16.68 5.55 -466.79 -2.59 -19.27 16 9 C 0.53 16.26 7.83 87.65 0.69 16.94 16 10 O -0.57 -22.37 15.98 -3.03 -0.05 -22.42 16 11 C -0.13 -4.13 5.70 29.85 0.17 -3.96 16 12 C -0.08 -3.63 4.44 30.59 0.14 -3.49 16 13 C 0.02 1.30 4.97 29.85 0.15 1.44 16 14 C -0.55 -32.17 9.11 25.60 0.23 -31.93 16 15 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 16 C 0.00 0.06 5.46 84.65 0.46 0.52 16 17 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 18 Si 0.96 45.40 29.54 68.60 2.03 47.42 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 22 O -0.21 -4.17 10.78 -3.76 -0.04 -4.21 16 23 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 24 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.21 2.10 8.06 -2.91 -0.02 2.07 16 29 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.42 7.80 8.46 -92.71 -0.78 7.02 16 32 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.04 2.00 8.10 -2.39 -0.02 1.98 16 35 H 0.04 1.97 8.10 -2.39 -0.02 1.95 16 36 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -74.69 332.42 1.58 -73.11 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 0.27 Total: 7.72 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 5.11 Total: -11.55 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -5.74 Total: -90.07 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.09 Total: -26.63 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -74.69 1.58 -73.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594343506.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.624 kcal (2) G-P(sol) polarization free energy of solvation -74.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds