Wall clock time and date at job start Mon Mar 30 2020 05:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30258 * 125.61867 * 2 1 4 4 C 1.34474 * 108.70072 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.16658 * 180.02562 * 4 3 2 6 6 C 1.34331 * 107.67029 * 0.02562 * 4 3 2 7 7 C 1.50697 * 126.44432 * 180.25867 * 6 4 3 8 8 N 1.46504 * 109.46925 * 89.71018 * 7 6 4 9 9 C 1.34776 * 119.99873 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00412 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99793 * 180.02562 * 9 8 7 12 12 C 1.52998 * 109.47094 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47340 * 180.02562 * 12 11 9 14 14 C 1.50697 * 109.47091 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00314 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99725 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99779 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00022 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47002 * 90.00208 * 18 16 14 20 20 H 1.48501 * 109.47338 * 210.00167 * 18 16 14 21 21 H 1.48497 * 109.47181 * 330.00238 * 18 16 14 22 22 O 1.33964 * 125.61941 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.46932 * 269.97510 * 1 2 3 24 24 H 1.08994 * 109.47103 * 29.97476 * 1 2 3 25 25 H 1.09002 * 109.47223 * 149.98071 * 1 2 3 26 26 H 1.08997 * 109.47862 * 269.98311 * 5 4 3 27 27 H 1.09010 * 109.47022 * 29.98255 * 5 4 3 28 28 H 1.08995 * 109.47218 * 149.97465 * 5 4 3 29 29 H 1.08995 * 109.47419 * 209.71053 * 7 6 4 30 30 H 1.09002 * 109.47246 * 329.71470 * 7 6 4 31 31 H 0.96999 * 120.00097 * 0.02562 * 8 7 6 32 32 H 1.09000 * 109.47362 * 300.00238 * 11 9 8 33 33 H 1.09002 * 109.47045 * 60.00064 * 11 9 8 34 34 H 1.09000 * 109.47263 * 300.00363 * 12 11 9 35 35 H 1.09002 * 109.47069 * 60.00144 * 12 11 9 36 36 H 1.08995 * 109.46744 * 300.00178 * 13 12 11 37 37 H 1.09002 * 109.46980 * 60.00018 * 13 12 11 38 38 H 0.97005 * 119.99525 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7570 1.5727 -0.0002 6 6 3.5698 -0.6756 -0.0015 7 6 4.7937 -1.5548 0.0031 8 7 5.1884 -1.8351 1.3858 9 6 6.2640 -2.6078 1.6361 10 8 6.9053 -3.0707 0.7168 11 6 6.6697 -2.8965 3.0585 12 6 7.9116 -3.7901 3.0633 13 6 8.3231 -4.0838 4.5073 14 6 9.5467 -4.9634 4.5119 15 1 9.9871 -5.2809 3.5783 16 6 10.1047 -5.3621 5.7081 17 7 11.1728 -6.1293 5.7121 18 14 9.3442 -4.8112 7.3230 19 1 8.3251 -5.8018 7.7535 20 1 10.4030 -4.7082 8.3591 21 1 8.7000 -3.4858 7.1401 22 8 2.2872 -1.0890 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5141 26 1 5.0476 1.7915 -1.0277 27 1 4.5130 2.5023 0.5141 28 1 5.5820 1.0792 0.5134 29 1 4.5703 -2.4913 -0.5079 30 1 5.6088 -1.0457 -0.5113 31 1 4.6753 -1.4652 2.1212 32 1 6.8933 -1.9602 3.5698 33 1 5.8543 -3.4055 3.5727 34 1 7.6875 -4.7264 2.5521 35 1 8.7270 -3.2815 2.5490 36 1 8.5471 -3.1477 5.0188 37 1 7.5075 -4.5925 5.0212 38 1 11.5651 -6.4101 6.5537 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594361581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:06 Heat of formation + Delta-G solvation = -37.576389 kcal Electronic energy + Delta-G solvation = -19183.171152 eV Core-core repulsion = 16026.723605 eV Total energy + Delta-G solvation = -3156.447547 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.75593 -39.60757 -35.69161 -35.33517 -34.29078 -32.97535 -32.07795 -29.96996 -29.24906 -27.88299 -24.91978 -23.35330 -22.13414 -21.03256 -20.63603 -19.88048 -17.49423 -17.29986 -16.65254 -16.41223 -15.82776 -15.71883 -14.89580 -14.37274 -14.05907 -13.94664 -13.74201 -13.50073 -13.38307 -13.22490 -13.08114 -12.73249 -12.63605 -12.33461 -11.99669 -11.61663 -11.26065 -10.99584 -10.89308 -10.78928 -10.07123 -9.88845 -9.71559 -9.57841 -9.25365 -9.15386 -8.93268 -8.50918 -6.00581 -3.98378 0.92252 2.17434 2.23409 2.76409 3.25628 3.31698 3.38925 3.41650 3.56578 4.22829 4.41749 4.47215 4.72034 4.85584 4.88780 4.94424 5.09112 5.25681 5.27657 5.32703 5.35571 5.39931 5.54035 5.56423 5.64535 5.71639 5.97552 6.06605 6.19954 6.55024 6.67722 6.91594 7.33492 7.35976 7.41183 7.45316 7.82678 8.26840 8.59277 9.06216 9.61440 11.13102 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034742 B = 0.002955 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.751776 B = 9474.291236 C = 9690.561882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.198 3.802 3 N -0.484 5.484 4 C 0.015 3.985 5 C -0.077 4.077 6 C -0.073 4.073 7 C 0.210 3.790 8 N -0.739 5.739 9 C 0.516 3.484 10 O -0.531 6.531 11 C -0.140 4.140 12 C -0.088 4.088 13 C -0.015 4.015 14 C -0.519 4.519 15 H 0.073 0.927 16 C 0.064 3.936 17 N -0.904 5.904 18 Si 0.881 3.119 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 O -0.195 6.195 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.402 0.598 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.015 0.985 37 H 0.011 0.989 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.067 15.426 -10.756 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.009 4.009 3 N -0.215 5.215 4 C -0.106 4.106 5 C -0.135 4.135 6 C -0.126 4.126 7 C 0.086 3.914 8 N -0.394 5.394 9 C 0.304 3.696 10 O -0.406 6.406 11 C -0.180 4.180 12 C -0.126 4.126 13 C -0.052 4.052 14 C -0.557 4.557 15 H 0.091 0.909 16 C -0.137 4.137 17 N -0.543 5.543 18 Si 0.709 3.291 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.190 1.190 22 O -0.082 6.082 23 H 0.113 0.887 24 H 0.120 0.880 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.236 0.764 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.034 0.966 37 H 0.029 0.971 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.696 15.543 -11.324 28.992 hybrid contribution -0.449 -0.283 1.250 1.358 sum -22.145 15.260 -10.073 28.718 Atomic orbital electron populations 1.20298 0.81089 1.05255 1.04908 1.26341 0.96521 0.78652 0.99348 1.70417 1.01574 1.30256 1.19268 1.21649 0.93529 0.92037 1.03375 1.20217 0.91773 0.98152 1.03309 1.23081 0.83632 0.94787 1.11089 1.19463 0.88614 0.97823 0.85499 1.46234 1.31751 1.54099 1.07347 1.21231 0.78773 0.76710 0.92871 1.90711 1.52664 1.50331 1.46903 1.21884 1.01834 1.02848 0.91461 1.21279 0.93686 0.97989 0.99614 1.19608 0.96798 0.96677 0.92119 1.21161 1.10302 1.29693 0.94539 0.90914 1.25057 0.94751 0.94703 0.99158 1.69926 1.21709 1.36021 1.26691 0.86758 0.79027 0.79714 0.83615 1.20364 1.21452 1.19048 1.84411 1.16451 1.37582 1.69791 0.88695 0.87998 0.89171 0.90309 0.90265 0.90223 0.89660 0.88072 0.76412 0.89180 0.89257 0.92043 0.91973 0.96639 0.97095 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.01 0.38 0.11 16 2 C 0.20 1.85 8.34 -12.95 -0.11 1.74 16 3 N -0.48 -5.37 11.29 -7.36 -0.08 -5.45 16 4 C 0.02 0.16 7.11 -82.81 -0.59 -0.43 16 5 C -0.08 -0.61 10.05 36.01 0.36 -0.25 16 6 C -0.07 -0.76 6.75 -35.69 -0.24 -1.00 16 7 C 0.21 2.19 5.83 -5.19 -0.03 2.15 16 8 N -0.74 -8.21 5.55 -61.47 -0.34 -8.55 16 9 C 0.52 7.66 7.83 -10.98 -0.09 7.57 16 10 O -0.53 -9.99 15.98 5.56 0.09 -9.90 16 11 C -0.14 -2.11 5.70 -27.88 -0.16 -2.27 16 12 C -0.09 -1.79 4.44 -26.73 -0.12 -1.91 16 13 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 14 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 15 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 16 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.90 -28.36 13.96 55.43 0.77 -27.59 16 18 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 21 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 22 O -0.20 -2.09 10.78 5.36 0.06 -2.03 16 23 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.08 0.59 7.79 -51.93 -0.40 0.18 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 1.00 7.80 -51.93 -0.41 0.59 16 31 H 0.40 3.66 8.46 -40.82 -0.35 3.31 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 35 H 0.06 1.34 8.10 -51.93 -0.42 0.91 16 36 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 37 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 327.96 15.07 4.94 4.94 Total: -1.00 -35.63 327.96 -6.10 -41.73 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.73 Total: -1.83 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.13 Total: -8.40 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.35 Total: -41.59 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.15 Total: -11.93 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.63 -6.10 -41.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594361581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.149 kcal (2) G-P(sol) polarization free energy of solvation -35.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds