Wall clock time and date at job start Mon Mar 30 2020 05:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30258 * 125.61867 * 2 1 4 4 C 1.34474 * 108.70072 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.16658 * 180.02562 * 4 3 2 6 6 C 1.34331 * 107.67029 * 0.02562 * 4 3 2 7 7 C 1.50697 * 126.44432 * 180.25867 * 6 4 3 8 8 N 1.46504 * 109.46925 * 89.71018 * 7 6 4 9 9 C 1.34776 * 119.99873 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00412 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99793 * 180.02562 * 9 8 7 12 12 C 1.52998 * 109.47094 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47340 * 180.02562 * 12 11 9 14 14 C 1.50697 * 109.47091 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00314 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99725 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99779 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00022 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47002 * 90.00208 * 18 16 14 20 20 H 1.48501 * 109.47338 * 210.00167 * 18 16 14 21 21 H 1.48497 * 109.47181 * 330.00238 * 18 16 14 22 22 O 1.33964 * 125.61941 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.46932 * 269.97510 * 1 2 3 24 24 H 1.08994 * 109.47103 * 29.97476 * 1 2 3 25 25 H 1.09002 * 109.47223 * 149.98071 * 1 2 3 26 26 H 1.08997 * 109.47862 * 269.98311 * 5 4 3 27 27 H 1.09010 * 109.47022 * 29.98255 * 5 4 3 28 28 H 1.08995 * 109.47218 * 149.97465 * 5 4 3 29 29 H 1.08995 * 109.47419 * 209.71053 * 7 6 4 30 30 H 1.09002 * 109.47246 * 329.71470 * 7 6 4 31 31 H 0.96999 * 120.00097 * 0.02562 * 8 7 6 32 32 H 1.09000 * 109.47362 * 300.00238 * 11 9 8 33 33 H 1.09002 * 109.47045 * 60.00064 * 11 9 8 34 34 H 1.09000 * 109.47263 * 300.00363 * 12 11 9 35 35 H 1.09002 * 109.47069 * 60.00144 * 12 11 9 36 36 H 1.08995 * 109.46744 * 300.00178 * 13 12 11 37 37 H 1.09002 * 109.46980 * 60.00018 * 13 12 11 38 38 H 0.97005 * 119.99525 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7570 1.5727 -0.0002 6 6 3.5698 -0.6756 -0.0015 7 6 4.7937 -1.5548 0.0031 8 7 5.1884 -1.8351 1.3858 9 6 6.2640 -2.6078 1.6361 10 8 6.9053 -3.0707 0.7168 11 6 6.6697 -2.8965 3.0585 12 6 7.9116 -3.7901 3.0633 13 6 8.3231 -4.0838 4.5073 14 6 9.5467 -4.9634 4.5119 15 1 9.9871 -5.2809 3.5783 16 6 10.1047 -5.3621 5.7081 17 7 11.1728 -6.1293 5.7121 18 14 9.3442 -4.8112 7.3230 19 1 8.3251 -5.8018 7.7535 20 1 10.4030 -4.7082 8.3591 21 1 8.7000 -3.4858 7.1401 22 8 2.2872 -1.0890 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5141 26 1 5.0476 1.7915 -1.0277 27 1 4.5130 2.5023 0.5141 28 1 5.5820 1.0792 0.5134 29 1 4.5703 -2.4913 -0.5079 30 1 5.6088 -1.0457 -0.5113 31 1 4.6753 -1.4652 2.1212 32 1 6.8933 -1.9602 3.5698 33 1 5.8543 -3.4055 3.5727 34 1 7.6875 -4.7264 2.5521 35 1 8.7270 -3.2815 2.5490 36 1 8.5471 -3.1477 5.0188 37 1 7.5075 -4.5925 5.0212 38 1 11.5651 -6.4101 6.5537 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594361581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:06 Heat of formation + Delta-G solvation = -65.274049 kcal Electronic energy + Delta-G solvation = -19184.372212 eV Core-core repulsion = 16026.723605 eV Total energy + Delta-G solvation = -3157.648607 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.48809 -40.78977 -36.63360 -36.24065 -35.97864 -34.15521 -33.64002 -30.87678 -30.21501 -29.14776 -26.06148 -24.78774 -22.84746 -22.16909 -21.77036 -21.29371 -19.00532 -18.27165 -18.08680 -17.38628 -16.93424 -16.73056 -16.24884 -15.78678 -15.10845 -15.07865 -14.72753 -14.52622 -14.27368 -14.14500 -13.86611 -13.80195 -13.70010 -13.48489 -13.16207 -12.92813 -12.69461 -12.47984 -11.96787 -11.78646 -11.72919 -11.65994 -11.48031 -11.31531 -10.98587 -10.73938 -10.27063 -9.71097 -8.26651 -6.32049 0.18134 1.39385 1.42715 1.44819 1.53375 1.54756 1.61106 2.28352 2.39953 2.97924 3.08583 3.49505 3.72493 3.85694 4.02628 4.15783 4.27422 4.31788 4.48416 4.60610 4.62208 4.68169 4.71563 4.79111 4.88015 4.92968 4.96523 4.97862 5.06001 5.12941 5.22527 5.35085 5.58501 5.62109 5.69470 6.31969 6.42738 6.62403 6.76958 7.17585 7.32292 8.90978 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034742 B = 0.002955 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.751776 B = 9474.291236 C = 9690.561882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.203 3.797 3 N -0.514 5.514 4 C 0.011 3.989 5 C -0.077 4.077 6 C -0.086 4.086 7 C 0.214 3.786 8 N -0.719 5.719 9 C 0.520 3.480 10 O -0.579 6.579 11 C -0.131 4.131 12 C -0.081 4.081 13 C -0.010 4.010 14 C -0.539 4.539 15 H 0.020 0.980 16 C -0.004 4.004 17 N -0.957 5.957 18 Si 0.962 3.038 19 H -0.265 1.265 20 H -0.287 1.287 21 H -0.235 1.235 22 O -0.208 6.208 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.415 0.585 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.031 0.969 37 H 0.028 0.972 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.991 17.394 -9.233 31.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.004 4.004 3 N -0.245 5.245 4 C -0.109 4.109 5 C -0.134 4.134 6 C -0.138 4.138 7 C 0.091 3.909 8 N -0.373 5.373 9 C 0.309 3.691 10 O -0.459 6.459 11 C -0.170 4.170 12 C -0.120 4.120 13 C -0.048 4.048 14 C -0.577 4.577 15 H 0.039 0.961 16 C -0.200 4.200 17 N -0.598 5.598 18 Si 0.784 3.216 19 H -0.190 1.190 20 H -0.213 1.213 21 H -0.158 1.158 22 O -0.096 6.096 23 H 0.130 0.870 24 H 0.131 0.869 25 H 0.125 0.875 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.125 0.875 31 H 0.252 0.748 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.668 17.552 -9.809 31.824 hybrid contribution 0.447 -0.912 0.661 1.212 sum -24.221 16.640 -9.147 30.777 Atomic orbital electron populations 1.20595 0.77984 1.06616 1.06379 1.27342 0.98017 0.77944 0.97088 1.70463 1.02059 1.31135 1.20879 1.22021 0.94072 0.92367 1.02479 1.20292 0.91096 0.97941 1.04050 1.22934 0.83582 0.94686 1.12639 1.19419 0.89077 0.97654 0.84792 1.45990 1.30417 1.52529 1.08354 1.21133 0.79102 0.76636 0.92270 1.90708 1.54517 1.52532 1.48102 1.21731 0.99834 1.03208 0.92229 1.21055 0.95806 0.98022 0.97093 1.19555 0.94676 0.96095 0.94428 1.21570 1.12454 1.30856 0.92838 0.96131 1.26198 0.95148 0.94549 1.04094 1.70109 1.23776 1.37786 1.28137 0.85499 0.78261 0.80753 0.77121 1.19009 1.21303 1.15817 1.84412 1.16685 1.38285 1.70183 0.86977 0.86872 0.87515 0.89394 0.89923 0.89663 0.90391 0.87497 0.74823 0.86241 0.86557 0.94422 0.94174 0.95067 0.95345 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 71.24 0.75 0.37 16 2 C 0.20 3.42 8.34 88.34 0.74 4.16 16 3 N -0.51 -10.62 11.29 -291.98 -3.30 -13.91 16 4 C 0.01 0.22 7.11 41.26 0.29 0.51 16 5 C -0.08 -1.10 10.05 71.24 0.72 -0.38 16 6 C -0.09 -1.67 6.75 24.79 0.17 -1.50 16 7 C 0.21 4.22 5.83 85.63 0.50 4.72 16 8 N -0.72 -14.50 5.55 -466.79 -2.59 -17.09 16 9 C 0.52 14.68 7.83 87.66 0.69 15.36 16 10 O -0.58 -21.94 15.98 -3.02 -0.05 -21.99 16 11 C -0.13 -3.57 5.70 29.85 0.17 -3.40 16 12 C -0.08 -3.31 4.44 30.59 0.14 -3.18 16 13 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 14 C -0.54 -32.25 9.66 25.60 0.25 -32.00 16 15 H 0.02 1.38 7.99 -2.91 -0.02 1.36 16 16 C 0.00 -0.24 5.47 84.66 0.46 0.22 16 17 N -0.96 -61.78 13.96 21.45 0.30 -61.48 16 18 Si 0.96 43.80 27.47 68.60 1.88 45.69 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 21 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 22 O -0.21 -4.13 10.78 -3.73 -0.04 -4.17 16 23 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 24 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.08 1.11 7.79 -2.39 -0.02 1.09 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.11 2.01 7.80 -2.39 -0.02 1.99 16 31 H 0.42 6.32 8.46 -92.71 -0.78 5.53 16 32 H 0.12 2.62 8.14 -2.39 -0.02 2.61 16 33 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 35 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 36 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 37 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 38 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 Total: -1.00 -80.50 327.96 1.41 -79.09 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.22 Total: 9.35 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 4.98 Total: -15.48 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -5.59 Total: -92.48 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.09 Total: -26.16 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.69 kcal Total: -80.50 1.41 -79.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594361581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.814 kcal (2) G-P(sol) polarization free energy of solvation -80.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds