Wall clock time and date at job start Mon Mar 30 2020 04:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47395 * 305.00575 * 12 11 10 14 14 N 1.46907 * 109.47034 * 65.00090 * 12 11 10 15 15 C 1.50702 * 109.47417 * 184.99962 * 12 11 10 16 16 O 1.21276 * 119.99842 * 260.00556 * 15 12 11 17 17 N 1.34774 * 119.99654 * 79.99812 * 15 12 11 18 18 C 1.46502 * 120.00078 * 179.97438 * 17 15 12 19 19 C 1.50697 * 109.47244 * 180.02562 * 18 17 15 20 20 C 1.34510 * 125.78597 * 90.00783 * 19 18 17 21 21 C 1.41387 * 106.83949 * 179.97438 * 20 19 18 22 22 C 1.34511 * 106.83820 * 359.97438 * 21 20 19 23 23 O 1.34299 * 108.42308 * 359.73963 * 22 21 20 24 24 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 26 26 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 27 27 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 28 28 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 29 29 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 30 30 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 31 31 H 1.00898 * 110.99789 * 59.99986 * 14 12 11 32 32 H 1.00899 * 111.00310 * 183.94943 * 14 12 11 33 33 H 0.97003 * 120.00109 * 0.02562 * 17 15 12 34 34 H 1.08998 * 109.47182 * 300.01147 * 18 17 15 35 35 H 1.09007 * 109.46701 * 60.00300 * 18 17 15 36 36 H 1.07998 * 126.58089 * 359.96055 * 20 19 18 37 37 H 1.08003 * 126.57928 * 179.97438 * 21 20 19 38 38 H 1.08007 * 125.78464 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 1 3.1589 -6.0426 -0.8435 14 7 3.2379 -6.1424 1.2534 15 6 1.7254 -7.4516 -0.1263 16 8 1.5132 -8.1256 0.8593 17 7 1.2911 -7.8663 -1.3328 18 6 0.5632 -9.1319 -1.4540 19 6 0.1930 -9.3624 -2.8965 20 6 0.9422 -10.0098 -3.8070 21 6 0.2170 -9.9931 -5.0206 22 6 -0.9321 -9.3370 -4.7789 23 8 -0.9439 -8.9626 -3.4892 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8721 -3.6042 -0.8905 28 1 2.8721 -3.6043 0.8895 29 1 0.8535 -5.0450 0.8885 30 1 0.8542 -5.0446 -0.8914 31 1 2.6256 -6.2406 2.0494 32 1 3.9456 -6.8616 1.2508 33 1 1.4611 -7.3272 -2.1211 34 1 1.1949 -9.9492 -1.1062 35 1 -0.3422 -9.0896 -0.8485 36 1 1.9116 -10.4564 -3.6426 37 1 0.5263 -10.4244 -5.9612 38 1 -1.7148 -9.1478 -5.4987 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594438140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:24 Heat of formation + Delta-G solvation = -41.541099 kcal Electronic energy + Delta-G solvation = -19295.718680 eV Core-core repulsion = 16139.099211 eV Total energy + Delta-G solvation = -3156.619469 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.91545 -39.98307 -35.90810 -35.21410 -33.32940 -33.28926 -31.33877 -30.80731 -28.02543 -26.50442 -24.55766 -22.35033 -22.09951 -20.94509 -20.24688 -19.99428 -18.02924 -17.10540 -16.62408 -16.35736 -16.00390 -15.60539 -15.25627 -14.61147 -14.41504 -14.28804 -13.80795 -13.35347 -13.17776 -13.03541 -12.95074 -12.39448 -12.27314 -11.76941 -11.47106 -11.13703 -10.73501 -10.64496 -10.40904 -10.32343 -10.23564 -9.59950 -9.35857 -9.20807 -9.04978 -8.98332 -8.52550 -8.28049 -5.93716 -3.95368 1.26285 2.21400 2.50797 2.59225 3.22940 3.35959 3.42065 3.46232 4.22657 4.50872 4.58313 4.66292 4.69773 4.81869 5.01267 5.18375 5.23996 5.40893 5.42178 5.44317 5.56876 5.71491 5.94451 6.09610 6.12555 6.14553 6.45785 6.77847 6.83521 7.02332 7.07565 7.25969 7.32567 7.51543 7.76577 7.92211 8.03971 8.07990 8.51221 9.12372 9.68337 11.17750 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020693 B = 0.003390 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.818821 B = 8257.426787 C = 9190.445541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.100 4.100 11 C -0.104 4.104 12 C 0.079 3.921 13 H 0.101 0.899 14 N -0.811 5.811 15 C 0.485 3.515 16 O -0.549 6.549 17 N -0.728 5.728 18 C 0.200 3.800 19 C -0.036 4.036 20 C -0.186 4.186 21 C -0.220 4.220 22 C -0.028 4.028 23 O -0.169 6.169 24 H 0.259 0.741 25 H 0.012 0.988 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.351 0.649 32 H 0.338 0.662 33 H 0.407 0.593 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 -21.542 -8.696 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.137 4.137 11 C -0.143 4.143 12 C -0.037 4.037 13 H 0.119 0.881 14 N -0.339 5.339 15 C 0.271 3.729 16 O -0.426 6.426 17 N -0.382 5.382 18 C 0.077 3.923 19 C -0.086 4.086 20 C -0.206 4.206 21 C -0.239 4.239 22 C -0.096 4.096 23 O -0.065 6.065 24 H 0.069 0.931 25 H 0.030 0.970 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.165 0.835 32 H 0.150 0.850 33 H 0.241 0.759 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.168 0.832 37 H 0.168 0.832 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.075 -21.004 -7.997 22.501 hybrid contribution 0.098 -0.013 -0.660 0.667 sum 1.173 -21.017 -8.657 22.760 Atomic orbital electron populations 1.69967 1.06055 1.26457 1.51252 1.25033 0.94830 0.99224 0.95509 0.86615 0.79911 0.83584 0.78009 1.20762 1.21316 1.19841 1.21286 0.93084 0.91111 1.49999 0.92648 1.19124 0.94113 0.91633 0.96941 1.21540 0.98766 0.92267 1.01172 1.21663 0.96536 0.94006 1.02046 1.21777 0.95856 0.90624 0.95406 0.88065 1.59046 1.17332 1.54230 1.03285 1.22643 0.79027 0.88948 0.82314 1.90679 1.57567 1.57361 1.36979 1.46258 1.58104 1.23022 1.10783 1.19559 0.97634 0.87941 0.87178 1.22305 0.86766 1.03528 0.96034 1.21705 1.01783 1.04321 0.92805 1.21886 0.96070 1.05982 0.99937 1.24178 1.00887 1.01138 0.83398 1.84074 1.37230 1.62559 1.22606 0.93118 0.96970 0.96763 0.93677 0.91795 0.91852 0.91889 0.83516 0.84991 0.75854 0.88510 0.89756 0.83204 0.83186 0.77811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.49 4.97 -27.88 -0.14 0.36 16 10 C -0.10 -2.04 5.04 -26.73 -0.13 -2.17 16 11 C -0.10 -1.73 4.84 -26.73 -0.13 -1.86 16 12 C 0.08 1.06 3.15 -68.86 -0.22 0.85 16 13 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 14 N -0.81 -10.94 8.44 -5.65 -0.05 -10.98 16 15 C 0.49 6.44 7.07 -10.99 -0.08 6.37 16 16 O -0.55 -8.84 16.25 5.56 0.09 -8.75 16 17 N -0.73 -7.86 5.55 -61.47 -0.34 -8.20 16 18 C 0.20 2.00 6.20 -5.19 -0.03 1.97 16 19 C -0.04 -0.35 6.69 -35.63 -0.24 -0.59 16 20 C -0.19 -1.60 10.81 -39.70 -0.43 -2.03 16 21 C -0.22 -1.72 10.91 -39.70 -0.43 -2.15 16 22 C -0.03 -0.22 12.09 29.41 0.36 0.14 16 23 O -0.17 -1.79 10.65 5.72 0.06 -1.73 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 1.35 7.75 -51.93 -0.40 0.95 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.35 4.93 8.58 -39.29 -0.34 4.59 16 32 H 0.34 3.90 9.06 -39.29 -0.36 3.54 16 33 H 0.41 3.85 8.46 -40.82 -0.35 3.50 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.15 0.85 8.06 -52.48 -0.42 0.42 16 38 H 0.21 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 330.59 15.07 4.98 4.98 Total: -1.00 -33.69 330.59 -7.06 -40.75 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.63 Total: 6.48 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -1.89 Total: -12.81 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.35 Total: -45.87 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.15 Total: -10.47 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.69 -7.06 -40.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594438140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.788 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds