Wall clock time and date at job start Mon Mar 30 2020 04:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46906 * 55.00224 * 12 11 10 14 14 N 1.46898 * 109.47092 * 295.00148 * 12 11 10 15 15 C 1.50699 * 109.47482 * 174.99860 * 12 11 10 16 16 O 1.21286 * 119.99857 * 100.00182 * 15 12 11 17 17 N 1.34781 * 120.00160 * 279.99980 * 15 12 11 18 18 C 1.46497 * 119.99716 * 179.97438 * 17 15 12 19 19 C 1.50705 * 109.46880 * 180.02562 * 18 17 15 20 20 C 1.34515 * 125.79233 * 89.71367 * 19 18 17 21 21 C 1.41385 * 106.83934 * 179.89281 * 20 19 18 22 22 C 1.34513 * 106.83896 * 0.37141 * 21 20 19 23 23 O 1.34304 * 108.42553 * 359.77414 * 22 21 20 24 24 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 26 26 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 29 29 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 30 30 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 31 31 H 1.00906 * 111.00043 * 176.04212 * 14 12 11 32 32 H 1.00899 * 111.00057 * 299.99390 * 14 12 11 33 33 H 0.96994 * 119.99782 * 0.02562 * 17 15 12 34 34 H 1.08998 * 109.47674 * 300.00172 * 18 17 15 35 35 H 1.08999 * 109.47358 * 60.00538 * 18 17 15 36 36 H 1.07993 * 126.57776 * 0.03287 * 20 19 18 37 37 H 1.07997 * 126.57811 * 180.17148 * 21 20 19 38 38 H 1.08005 * 125.78772 * 179.75345 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 6 6.0614 -4.0791 -0.0015 13 1 5.6269 -4.6178 -0.8435 14 7 5.6728 -4.7363 1.2535 15 6 7.5633 -4.0809 -0.1253 16 8 8.2529 -4.2343 0.8606 17 7 8.1403 -3.9121 -1.3316 18 6 9.6004 -3.9133 -1.4517 19 6 9.9858 -3.7069 -2.8940 20 6 10.1957 -2.5195 -3.4900 21 6 10.5365 -2.7909 -4.8351 22 6 10.5064 -4.1276 -4.9825 23 8 10.1723 -4.6773 -3.8036 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8910 27 1 3.6584 -3.1503 0.8892 28 1 3.6578 -3.1506 -0.8908 29 1 5.9148 -2.1229 -0.8909 30 1 5.9148 -2.1228 0.8890 31 1 5.9417 -5.7089 1.2507 32 1 6.0636 -4.2554 2.0497 33 1 7.5888 -3.7891 -2.1200 34 1 10.0155 -3.1077 -0.8462 35 1 9.9928 -4.8687 -1.1036 36 1 10.1207 -1.5458 -3.0290 37 1 10.7722 -2.0642 -5.5985 38 1 10.7153 -4.6672 -5.8945 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594438143.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:27 Heat of formation + Delta-G solvation = -38.029836 kcal Electronic energy + Delta-G solvation = -19357.359939 eV Core-core repulsion = 16200.892730 eV Total energy + Delta-G solvation = -3156.467210 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.96137 -40.04981 -36.01334 -35.28497 -33.35411 -33.32610 -31.53642 -30.85912 -28.37295 -26.67614 -24.63919 -22.19115 -22.12686 -20.98614 -20.26258 -20.02031 -18.08420 -17.17287 -16.68957 -16.67232 -16.15529 -15.73032 -15.27271 -14.76355 -14.33680 -14.12006 -13.93400 -13.43814 -13.21370 -13.12859 -13.00121 -12.60895 -12.36940 -11.93941 -11.71924 -11.40572 -10.84726 -10.71317 -10.46049 -10.30468 -9.83019 -9.67546 -9.49684 -9.40366 -9.12928 -9.05233 -8.58936 -8.48251 -5.98886 -3.95970 1.21087 2.18248 2.43507 2.54005 3.16373 3.33369 3.40979 3.45214 4.17855 4.49748 4.50895 4.63822 4.65542 4.74782 4.97005 5.10852 5.19397 5.30527 5.35457 5.41623 5.55191 5.66988 5.81373 5.97509 6.04770 6.09340 6.29554 6.66282 6.72274 6.77890 7.00619 7.01890 7.26175 7.42302 7.47356 7.54173 7.86366 7.97461 8.61371 9.07748 9.64222 11.14854 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.003704 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.407303 B = 7556.819587 C = 8526.510854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.092 4.092 11 C -0.107 4.107 12 C 0.079 3.921 13 H 0.103 0.897 14 N -0.810 5.810 15 C 0.485 3.515 16 O -0.548 6.548 17 N -0.728 5.728 18 C 0.201 3.799 19 C -0.039 4.039 20 C -0.182 4.182 21 C -0.217 4.217 22 C -0.031 4.031 23 O -0.172 6.172 24 H 0.262 0.738 25 H 0.014 0.986 26 H 0.007 0.993 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.340 0.660 32 H 0.350 0.650 33 H 0.406 0.594 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.769 -8.584 -8.551 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.090 0.910 9 C -0.053 4.053 10 C -0.130 4.130 11 C -0.145 4.145 12 C -0.037 4.037 13 H 0.121 0.879 14 N -0.339 5.339 15 C 0.270 3.730 16 O -0.425 6.425 17 N -0.382 5.382 18 C 0.078 3.922 19 C -0.089 4.089 20 C -0.202 4.202 21 C -0.236 4.236 22 C -0.099 4.099 23 O -0.068 6.068 24 H 0.072 0.928 25 H 0.032 0.968 26 H 0.026 0.974 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.152 0.848 32 H 0.165 0.835 33 H 0.241 0.759 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 22.317 -8.716 -7.942 25.241 hybrid contribution 1.323 1.110 -0.613 1.832 sum 23.640 -7.606 -8.554 26.265 Atomic orbital electron populations 1.69923 1.06294 1.26744 1.51571 1.25050 0.94718 0.99136 0.94757 0.86779 0.80393 0.83734 0.78363 1.20429 1.21474 1.19059 1.21185 0.89644 0.94416 1.50199 0.90979 1.19605 0.97092 0.92727 0.95918 1.21370 0.90254 0.99335 1.02054 1.21693 0.99639 0.91237 1.01964 1.21751 0.86865 0.99431 0.95602 0.87917 1.59040 1.65074 1.06575 1.03189 1.22643 0.93236 0.74758 0.82359 1.90686 1.65345 1.49493 1.36979 1.46267 1.06449 1.74691 1.10782 1.19557 0.81935 1.04120 0.86602 1.22298 1.07771 0.86593 0.92227 1.21761 1.05164 0.98641 0.94660 1.21914 1.07851 0.96121 0.97702 1.24149 1.03850 0.93769 0.88131 1.84044 1.67558 1.36728 1.18474 0.92850 0.96810 0.97446 0.91186 0.93029 0.91876 0.91834 0.84819 0.83532 0.75857 0.88397 0.89884 0.83038 0.83118 0.77837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.34 13.96 55.43 0.77 -27.57 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -14.92 9.66 -34.44 -0.33 -15.26 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 10 C -0.09 -1.79 5.04 -26.73 -0.13 -1.93 16 11 C -0.11 -1.63 4.84 -26.74 -0.13 -1.76 16 12 C 0.08 1.01 3.15 -68.87 -0.22 0.79 16 13 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 14 N -0.81 -10.56 8.44 -5.66 -0.05 -10.61 16 15 C 0.48 6.11 7.07 -10.98 -0.08 6.03 16 16 O -0.55 -8.49 16.25 5.55 0.09 -8.40 16 17 N -0.73 -7.39 5.55 -61.47 -0.34 -7.73 16 18 C 0.20 1.90 6.20 -5.19 -0.03 1.87 16 19 C -0.04 -0.36 6.69 -35.62 -0.24 -0.60 16 20 C -0.18 -1.60 10.81 -39.70 -0.43 -2.03 16 21 C -0.22 -1.67 10.91 -39.70 -0.43 -2.11 16 22 C -0.03 -0.22 12.09 29.42 0.36 0.13 16 23 O -0.17 -1.63 10.65 5.70 0.06 -1.57 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 25 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 26 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 27 H 0.07 1.43 7.75 -51.93 -0.40 1.03 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.34 3.84 9.06 -39.29 -0.36 3.49 16 32 H 0.35 4.71 8.58 -39.29 -0.34 4.37 16 33 H 0.41 3.58 8.46 -40.82 -0.35 3.23 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.21 0.70 8.06 -52.48 -0.42 0.28 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -33.99 326.99 -6.68 -40.67 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.60 Total: 6.49 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -1.88 Total: -13.54 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.38 Total: -45.91 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.15 Total: -9.97 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.99 -6.68 -40.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594438143.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.641 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds