Wall clock time and date at job start Mon Mar 30 2020 04:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46906 * 55.00224 * 12 11 10 14 14 N 1.46898 * 109.47092 * 295.00148 * 12 11 10 15 15 C 1.50699 * 109.47482 * 174.99860 * 12 11 10 16 16 O 1.21286 * 119.99857 * 100.00182 * 15 12 11 17 17 N 1.34781 * 120.00160 * 279.99980 * 15 12 11 18 18 C 1.46497 * 119.99716 * 179.97438 * 17 15 12 19 19 C 1.50705 * 109.46880 * 180.02562 * 18 17 15 20 20 C 1.34515 * 125.79233 * 89.71367 * 19 18 17 21 21 C 1.41385 * 106.83934 * 179.89281 * 20 19 18 22 22 C 1.34513 * 106.83896 * 0.37141 * 21 20 19 23 23 O 1.34304 * 108.42553 * 359.77414 * 22 21 20 24 24 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 26 26 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 29 29 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 30 30 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 31 31 H 1.00906 * 111.00043 * 176.04212 * 14 12 11 32 32 H 1.00899 * 111.00057 * 299.99390 * 14 12 11 33 33 H 0.96994 * 119.99782 * 0.02562 * 17 15 12 34 34 H 1.08998 * 109.47674 * 300.00172 * 18 17 15 35 35 H 1.08999 * 109.47358 * 60.00538 * 18 17 15 36 36 H 1.07993 * 126.57776 * 0.03287 * 20 19 18 37 37 H 1.07997 * 126.57811 * 180.17148 * 21 20 19 38 38 H 1.08005 * 125.78772 * 179.75345 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 6 6.0614 -4.0791 -0.0015 13 1 5.6269 -4.6178 -0.8435 14 7 5.6728 -4.7363 1.2535 15 6 7.5633 -4.0809 -0.1253 16 8 8.2529 -4.2343 0.8606 17 7 8.1403 -3.9121 -1.3316 18 6 9.6004 -3.9133 -1.4517 19 6 9.9858 -3.7069 -2.8940 20 6 10.1957 -2.5195 -3.4900 21 6 10.5365 -2.7909 -4.8351 22 6 10.5064 -4.1276 -4.9825 23 8 10.1723 -4.6773 -3.8036 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8910 27 1 3.6584 -3.1503 0.8892 28 1 3.6578 -3.1506 -0.8908 29 1 5.9148 -2.1229 -0.8909 30 1 5.9148 -2.1228 0.8890 31 1 5.9417 -5.7089 1.2507 32 1 6.0636 -4.2554 2.0497 33 1 7.5888 -3.7891 -2.1200 34 1 10.0155 -3.1077 -0.8462 35 1 9.9928 -4.8687 -1.1036 36 1 10.1207 -1.5458 -3.0290 37 1 10.7722 -2.0642 -5.5985 38 1 10.7153 -4.6672 -5.8945 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594438143.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:26 Heat of formation + Delta-G solvation = -63.794281 kcal Electronic energy + Delta-G solvation = -19358.477170 eV Core-core repulsion = 16200.892730 eV Total energy + Delta-G solvation = -3157.584440 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.57179 -41.05308 -37.26028 -36.23586 -35.18207 -33.95343 -33.35007 -31.58485 -29.87252 -27.68401 -25.96309 -23.65353 -22.73921 -21.72017 -21.65097 -21.20503 -18.85474 -18.84362 -18.04678 -17.44273 -17.13987 -16.61916 -16.26902 -16.16474 -15.72036 -15.38303 -14.87726 -14.74814 -14.48352 -14.19607 -13.80117 -13.71743 -13.56765 -13.24445 -13.06831 -12.91388 -12.49406 -12.24975 -11.75681 -11.68203 -11.34839 -11.27544 -11.11708 -10.92212 -10.72060 -10.29030 -9.83773 -9.46044 -8.25573 -6.28918 0.58355 1.37177 1.40118 1.44562 1.52096 1.59280 1.93116 2.33846 2.39383 3.09922 3.50205 3.57164 3.78680 3.99173 4.07840 4.10882 4.17158 4.33008 4.44490 4.50491 4.64016 4.86202 4.91374 4.97374 5.07555 5.10984 5.13017 5.19823 5.23214 5.53090 5.67271 5.72029 5.77372 6.04687 6.12474 6.35182 6.36935 6.49160 6.80127 7.04559 7.35506 8.91620 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.003704 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.407303 B = 7556.819587 C = 8526.510854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.248 1.248 7 C -0.530 4.530 8 H 0.030 0.970 9 C -0.015 4.015 10 C -0.083 4.083 11 C -0.097 4.097 12 C 0.086 3.914 13 H 0.120 0.880 14 N -0.820 5.820 15 C 0.490 3.510 16 O -0.578 6.578 17 N -0.715 5.715 18 C 0.204 3.796 19 C -0.055 4.055 20 C -0.188 4.188 21 C -0.232 4.232 22 C -0.026 4.026 23 O -0.189 6.189 24 H 0.265 0.735 25 H 0.014 0.986 26 H 0.020 0.980 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.349 0.651 32 H 0.348 0.652 33 H 0.415 0.585 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.159 0.841 37 H 0.169 0.831 38 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.029 -7.887 -9.896 28.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.171 1.171 7 C -0.568 4.568 8 H 0.049 0.951 9 C -0.052 4.052 10 C -0.121 4.121 11 C -0.135 4.135 12 C -0.030 4.030 13 H 0.138 0.862 14 N -0.349 5.349 15 C 0.276 3.724 16 O -0.458 6.458 17 N -0.368 5.368 18 C 0.081 3.919 19 C -0.104 4.104 20 C -0.208 4.208 21 C -0.251 4.251 22 C -0.094 4.094 23 O -0.085 6.085 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.251 0.749 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.176 0.824 37 H 0.186 0.814 38 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 24.593 -8.038 -9.319 27.500 hybrid contribution 0.573 0.811 -0.256 1.025 sum 25.166 -7.227 -9.575 27.879 Atomic orbital electron populations 1.70085 1.08376 1.28051 1.53101 1.26074 0.95628 1.03653 0.94299 0.85620 0.79406 0.78112 0.79259 1.18868 1.21218 1.17123 1.21575 0.92485 0.92976 1.49780 0.95144 1.19581 0.93605 0.95779 0.96227 1.21175 0.93297 0.96269 1.01313 1.21516 0.96247 0.93154 1.02605 1.21641 0.87174 0.98079 0.96111 0.86235 1.59049 1.65286 1.07312 1.03272 1.22452 0.92879 0.74570 0.82547 1.90680 1.65824 1.51144 1.38133 1.46182 1.07062 1.73268 1.10334 1.19523 0.81201 1.03990 0.87177 1.22200 1.09217 0.86847 0.92160 1.22008 1.04614 0.98794 0.95348 1.22230 1.08205 0.96911 0.97719 1.24897 1.02131 0.94094 0.88268 1.84036 1.67967 1.37243 1.19265 0.92620 0.96814 0.96162 0.92823 0.93009 0.90024 0.92446 0.83753 0.83866 0.74872 0.88228 0.90277 0.82375 0.81360 0.74488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 2 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 3 Si 0.95 44.74 27.47 68.60 1.88 46.62 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 7 C -0.53 -31.12 9.66 25.60 0.25 -30.87 16 8 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 9 C -0.01 -0.68 4.04 29.85 0.12 -0.56 16 10 C -0.08 -3.13 5.04 30.59 0.15 -2.98 16 11 C -0.10 -2.75 4.84 30.59 0.15 -2.60 16 12 C 0.09 2.03 3.15 44.17 0.14 2.17 16 13 H 0.12 2.44 8.14 -2.39 -0.02 2.43 16 14 N -0.82 -20.57 8.44 -171.81 -1.45 -22.02 16 15 C 0.49 11.54 7.07 87.66 0.62 12.16 16 16 O -0.58 -17.27 16.25 -3.05 -0.05 -17.32 16 17 N -0.72 -13.19 5.55 -466.78 -2.59 -15.78 16 18 C 0.20 3.59 6.20 85.63 0.53 4.13 16 19 C -0.05 -0.93 6.69 24.83 0.17 -0.76 16 20 C -0.19 -2.95 10.81 22.19 0.24 -2.71 16 21 C -0.23 -3.04 10.91 22.19 0.24 -2.79 16 22 C -0.03 -0.31 12.09 66.97 0.81 0.49 16 23 O -0.19 -3.25 10.65 -2.53 -0.03 -3.28 16 24 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 25 H 0.01 0.63 7.20 -2.39 -0.02 0.62 16 26 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 27 H 0.05 2.19 7.75 -2.39 -0.02 2.17 16 28 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.35 7.54 9.06 -89.69 -0.81 6.73 16 32 H 0.35 9.11 8.58 -89.69 -0.77 8.34 16 33 H 0.41 6.32 8.46 -92.71 -0.78 5.54 16 34 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 38 H 0.24 0.84 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -73.90 326.99 0.61 -73.29 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -1.34 Total: 23.07 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 3.88 Total: -23.89 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -3.74 Total: -98.49 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.08 Total: -20.60 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Total: -73.90 0.61 -73.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594438143.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.498 kcal (2) G-P(sol) polarization free energy of solvation -73.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds