Wall clock time and date at job start Mon Mar 30 2020 05:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30253 * 125.61815 * 2 1 4 4 C 1.34480 * 108.69972 * 179.84169 * 3 2 1 5 5 C 1.50706 * 126.16738 * 180.17284 * 4 3 2 6 6 N 1.46898 * 109.46590 * 270.29963 * 5 4 3 7 7 C 1.47899 * 111.00333 * 69.87218 * 6 5 4 8 8 C 1.53994 * 107.05842 * 214.15147 * 7 6 5 9 9 C 1.54589 * 105.14238 * 1.22767 * 8 7 6 10 10 O 1.42898 * 110.72430 * 263.42153 * 9 8 7 11 11 C 1.50698 * 110.72905 * 140.31249 * 9 8 7 12 12 H 1.08001 * 119.99686 * 2.72564 * 11 9 8 13 13 C 1.37874 * 120.00201 * 182.72457 * 11 9 8 14 14 N 1.31515 * 119.99743 * 185.18423 * 13 11 9 15 15 Si 1.86802 * 120.00085 * 5.18752 * 13 11 9 16 16 H 1.48498 * 109.47067 * 84.56388 * 15 13 11 17 17 H 1.48499 * 109.46707 * 204.56017 * 15 13 11 18 18 H 1.48495 * 109.46747 * 324.56073 * 15 13 11 19 19 C 1.48537 * 111.00146 * 312.47256 * 6 5 4 20 20 C 1.34332 * 107.66619 * 0.42029 * 4 3 2 21 21 C 1.50698 * 126.44022 * 179.72398 * 20 4 3 22 22 O 1.33969 * 125.62078 * 180.31063 * 2 1 3 23 23 H 1.09000 * 109.46743 * 179.71551 * 1 2 3 24 24 H 1.08998 * 109.46509 * 299.71767 * 1 2 3 25 25 H 1.09002 * 109.47043 * 59.71194 * 1 2 3 26 26 H 1.08998 * 109.46841 * 30.29638 * 5 4 3 27 27 H 1.08998 * 109.47123 * 150.30164 * 5 4 3 28 28 H 1.09000 * 109.91976 * 333.50946 * 7 6 5 29 29 H 1.09009 * 109.91496 * 94.79979 * 7 6 5 30 30 H 1.09003 * 110.30387 * 120.14367 * 8 7 6 31 31 H 1.08994 * 110.30895 * 242.20674 * 8 7 6 32 32 H 0.96703 * 113.99901 * 298.54071 * 10 9 8 33 33 H 0.97006 * 119.99940 * 179.97438 * 14 13 11 34 34 H 1.08998 * 110.66991 * 278.15865 * 19 6 5 35 35 H 1.08997 * 110.66170 * 41.29166 * 19 6 5 36 36 H 1.08999 * 109.46992 * 180.02562 * 21 20 4 37 37 H 1.09009 * 109.47504 * 300.00382 * 21 20 4 38 38 H 1.09000 * 109.47254 * 60.00763 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0035 5 6 4.7571 1.5727 0.0084 6 7 5.1485 1.8742 -1.3750 7 6 4.1529 2.7514 -2.0283 8 6 4.0972 2.3444 -3.5124 9 6 5.0936 1.1700 -3.6468 10 8 6.3625 1.6341 -4.1121 11 6 4.5463 0.1088 -4.5661 12 1 3.5971 0.2586 -5.0591 13 6 5.2573 -1.0534 -4.7779 14 7 4.8312 -1.9340 -5.6569 15 14 6.8257 -1.3772 -3.8163 16 1 6.4854 -1.9819 -2.5034 17 1 7.6916 -2.3099 -4.5813 18 1 7.5466 -0.0972 -3.5998 19 6 5.1988 0.6372 -2.1957 20 6 3.5698 -0.6757 -0.0037 21 6 4.7937 -1.5549 -0.0089 22 8 2.2873 -1.0890 -0.0059 23 1 -0.3633 -1.0277 -0.0051 24 1 -0.3632 0.5095 0.8925 25 1 -0.3633 0.5183 -0.8874 26 1 4.5130 2.4996 0.5273 27 1 5.5822 1.0765 0.5195 28 1 3.1751 2.6107 -1.5677 29 1 4.4614 3.7932 -1.9402 30 1 3.0913 2.0194 -3.7780 31 1 4.4043 3.1773 -4.1449 32 1 6.3340 2.0465 -4.9863 33 1 5.3316 -2.7515 -5.8061 34 1 6.1432 0.1140 -2.0455 35 1 4.3560 -0.0134 -1.9627 36 1 4.4892 -2.6015 -0.0148 37 1 5.3883 -1.3448 -0.8980 38 1 5.3889 -1.3544 0.8820 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595559450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:36 Heat of formation + Delta-G solvation = -7.962262 kcal Electronic energy + Delta-G solvation = -21813.094602 eV Core-core repulsion = 18657.931221 eV Total energy + Delta-G solvation = -3155.163382 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.18609 -38.74406 -35.57589 -34.18995 -33.02222 -32.33378 -30.33728 -30.14227 -28.18987 -26.66185 -24.64617 -23.61115 -21.63406 -21.09607 -19.72542 -19.51314 -17.41749 -16.68529 -16.43312 -15.39671 -15.02913 -14.59807 -14.28509 -14.07305 -13.93546 -13.55274 -13.26622 -13.01583 -12.89648 -12.60219 -12.49395 -12.34055 -12.10079 -11.65694 -11.49574 -11.24543 -11.03496 -10.75620 -10.55498 -10.43074 -10.24741 -10.06575 -9.87321 -8.92869 -8.66276 -8.32977 -8.24434 -7.88590 -6.17827 -4.27606 1.65549 2.84373 2.86801 3.24977 3.41495 3.66210 4.15064 4.45017 4.64734 4.90882 5.03753 5.14931 5.18998 5.30551 5.36224 5.40344 5.55014 5.56602 5.62029 5.71976 5.81753 5.91970 5.96855 6.07756 6.21368 6.30935 6.31273 6.36186 6.53639 6.57223 6.75219 6.87280 7.14119 7.36527 7.55688 7.66763 7.96970 8.26457 8.80307 9.06135 9.47459 10.92993 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018999 B = 0.008651 C = 0.007825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.437988 B = 3235.692099 C = 3577.430224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.176 3.824 3 N -0.471 5.471 4 C -0.043 4.043 5 C 0.123 3.877 6 N -0.502 5.502 7 C 0.034 3.966 8 C -0.143 4.143 9 C 0.222 3.778 10 O -0.567 6.567 11 C -0.550 4.550 12 H 0.074 0.926 13 C 0.086 3.914 14 N -0.890 5.890 15 Si 0.867 3.133 16 H -0.282 1.282 17 H -0.300 1.300 18 H -0.221 1.221 19 C 0.038 3.962 20 C -0.029 4.029 21 C -0.084 4.084 22 O -0.201 6.201 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.359 0.641 33 H 0.265 0.735 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.994 3.365 12.225 13.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.031 4.031 3 N -0.201 5.201 4 C -0.165 4.165 5 C -0.006 4.006 6 N -0.224 5.224 7 C -0.094 4.094 8 C -0.182 4.182 9 C 0.182 3.818 10 O -0.372 6.372 11 C -0.588 4.588 12 H 0.092 0.908 13 C -0.118 4.118 14 N -0.527 5.527 15 Si 0.695 3.305 16 H -0.209 1.209 17 H -0.227 1.227 18 H -0.144 1.144 19 C -0.089 4.089 20 C -0.083 4.083 21 C -0.140 4.140 22 O -0.088 6.088 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.206 0.794 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.501 3.819 12.748 13.760 hybrid contribution -0.167 -1.334 -0.205 1.360 sum -3.668 2.485 12.543 13.303 Atomic orbital electron populations 1.20170 0.81641 1.04404 1.04669 1.26128 0.96293 0.78882 1.01772 1.70290 1.01545 1.30190 1.18113 1.22345 0.94133 0.92847 1.07132 1.20849 0.89771 0.96816 0.93158 1.65179 1.43170 1.13695 1.00393 1.22870 0.94494 0.96916 0.95120 1.22986 1.01207 0.99320 0.94657 1.19834 0.80834 0.90561 0.90565 1.86528 1.32947 1.80312 1.37457 1.21381 1.07932 1.01342 1.28124 0.90807 1.24985 0.97399 0.95414 0.94041 1.69948 1.39917 1.09938 1.32874 0.87229 0.84461 0.79626 0.79153 1.20950 1.22713 1.14363 1.23826 1.00502 0.91293 0.93235 1.23181 0.83715 0.95150 1.06234 1.20629 0.90413 0.98352 1.04603 1.84362 1.16654 1.37730 1.70071 0.89672 0.88935 0.88655 0.89628 0.89496 0.92662 0.91529 0.91678 0.92090 0.79436 0.92526 0.91136 0.91760 0.90389 0.88224 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.54 10.51 36.01 0.38 -0.16 16 2 C 0.18 2.83 8.34 -12.95 -0.11 2.73 16 3 N -0.47 -8.43 10.21 -7.35 -0.08 -8.50 16 4 C -0.04 -0.77 4.73 -82.81 -0.39 -1.17 16 5 C 0.12 2.08 5.82 -4.97 -0.03 2.05 16 6 N -0.50 -9.93 5.54 -231.88 -1.28 -11.21 16 7 C 0.03 0.65 6.46 -2.76 -0.02 0.63 16 8 C -0.14 -3.02 6.25 -25.38 -0.16 -3.18 16 9 C 0.22 5.32 0.78 -89.91 -0.07 5.25 16 10 O -0.57 -13.32 10.33 -35.23 -0.36 -13.68 16 11 C -0.55 -15.38 8.82 -34.44 -0.30 -15.68 16 12 H 0.07 2.25 7.81 -52.49 -0.41 1.84 16 13 C 0.09 2.47 5.47 -17.82 -0.10 2.37 16 14 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 15 Si 0.87 21.58 23.94 -169.99 -4.07 17.51 16 16 H -0.28 -6.55 5.75 56.52 0.33 -6.22 16 17 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 18 H -0.22 -5.49 5.47 56.52 0.31 -5.18 16 19 C 0.04 0.86 2.83 -1.89 -0.01 0.85 16 20 C -0.03 -0.51 5.91 -35.69 -0.21 -0.72 16 21 C -0.08 -1.29 9.67 36.00 0.35 -0.95 16 22 O -0.20 -3.55 10.77 5.39 0.06 -3.49 16 23 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 27 H 0.09 1.29 7.89 -51.93 -0.41 0.88 16 28 H 0.06 1.07 6.19 -51.93 -0.32 0.75 16 29 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 30 H 0.06 1.43 7.68 -51.93 -0.40 1.03 16 31 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 32 H 0.36 7.37 9.09 45.56 0.41 7.78 16 33 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.07 1.63 4.19 -51.93 -0.22 1.41 16 35 H 0.06 1.52 4.39 -51.93 -0.23 1.29 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.10 1.80 4.13 -51.92 -0.21 1.59 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 293.34 15.07 4.42 4.42 Total: -1.00 -33.29 293.34 -5.67 -38.96 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -4.47 Total: 10.16 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -0.67 Total: -7.98 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -0.59 Total: -45.89 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.31 Total: -17.17 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.07 Total: 17.51 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.29 -5.67 -38.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595559450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.995 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds