Wall clock time and date at job start Mon Mar 30 2020 05:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30253 * 125.61815 * 2 1 4 4 C 1.34480 * 108.69972 * 179.84169 * 3 2 1 5 5 C 1.50706 * 126.16738 * 180.17284 * 4 3 2 6 6 N 1.46898 * 109.46590 * 270.29963 * 5 4 3 7 7 C 1.47899 * 111.00333 * 69.87218 * 6 5 4 8 8 C 1.53994 * 107.05842 * 214.15147 * 7 6 5 9 9 C 1.54589 * 105.14238 * 1.22767 * 8 7 6 10 10 O 1.42898 * 110.72430 * 263.42153 * 9 8 7 11 11 C 1.50698 * 110.72905 * 140.31249 * 9 8 7 12 12 H 1.08001 * 119.99686 * 2.72564 * 11 9 8 13 13 C 1.37874 * 120.00201 * 182.72457 * 11 9 8 14 14 N 1.31515 * 119.99743 * 185.18423 * 13 11 9 15 15 Si 1.86802 * 120.00085 * 5.18752 * 13 11 9 16 16 H 1.48498 * 109.47067 * 84.56388 * 15 13 11 17 17 H 1.48499 * 109.46707 * 204.56017 * 15 13 11 18 18 H 1.48495 * 109.46747 * 324.56073 * 15 13 11 19 19 C 1.48537 * 111.00146 * 312.47256 * 6 5 4 20 20 C 1.34332 * 107.66619 * 0.42029 * 4 3 2 21 21 C 1.50698 * 126.44022 * 179.72398 * 20 4 3 22 22 O 1.33969 * 125.62078 * 180.31063 * 2 1 3 23 23 H 1.09000 * 109.46743 * 179.71551 * 1 2 3 24 24 H 1.08998 * 109.46509 * 299.71767 * 1 2 3 25 25 H 1.09002 * 109.47043 * 59.71194 * 1 2 3 26 26 H 1.08998 * 109.46841 * 30.29638 * 5 4 3 27 27 H 1.08998 * 109.47123 * 150.30164 * 5 4 3 28 28 H 1.09000 * 109.91976 * 333.50946 * 7 6 5 29 29 H 1.09009 * 109.91496 * 94.79979 * 7 6 5 30 30 H 1.09003 * 110.30387 * 120.14367 * 8 7 6 31 31 H 1.08994 * 110.30895 * 242.20674 * 8 7 6 32 32 H 0.96703 * 113.99901 * 298.54071 * 10 9 8 33 33 H 0.97006 * 119.99940 * 179.97438 * 14 13 11 34 34 H 1.08998 * 110.66991 * 278.15865 * 19 6 5 35 35 H 1.08997 * 110.66170 * 41.29166 * 19 6 5 36 36 H 1.08999 * 109.46992 * 180.02562 * 21 20 4 37 37 H 1.09009 * 109.47504 * 300.00382 * 21 20 4 38 38 H 1.09000 * 109.47254 * 60.00763 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0035 5 6 4.7571 1.5727 0.0084 6 7 5.1485 1.8742 -1.3750 7 6 4.1529 2.7514 -2.0283 8 6 4.0972 2.3444 -3.5124 9 6 5.0936 1.1700 -3.6468 10 8 6.3625 1.6341 -4.1121 11 6 4.5463 0.1088 -4.5661 12 1 3.5971 0.2586 -5.0591 13 6 5.2573 -1.0534 -4.7779 14 7 4.8312 -1.9340 -5.6569 15 14 6.8257 -1.3772 -3.8163 16 1 6.4854 -1.9819 -2.5034 17 1 7.6916 -2.3099 -4.5813 18 1 7.5466 -0.0972 -3.5998 19 6 5.1988 0.6372 -2.1957 20 6 3.5698 -0.6757 -0.0037 21 6 4.7937 -1.5549 -0.0089 22 8 2.2873 -1.0890 -0.0059 23 1 -0.3633 -1.0277 -0.0051 24 1 -0.3632 0.5095 0.8925 25 1 -0.3633 0.5183 -0.8874 26 1 4.5130 2.4996 0.5273 27 1 5.5822 1.0765 0.5195 28 1 3.1751 2.6107 -1.5677 29 1 4.4614 3.7932 -1.9402 30 1 3.0913 2.0194 -3.7780 31 1 4.4043 3.1773 -4.1449 32 1 6.3340 2.0465 -4.9863 33 1 5.3316 -2.7515 -5.8061 34 1 6.1432 0.1140 -2.0455 35 1 4.3560 -0.0134 -1.9627 36 1 4.4892 -2.6015 -0.0148 37 1 5.3883 -1.3448 -0.8980 38 1 5.3889 -1.3544 0.8820 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595559450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:35 Heat of formation + Delta-G solvation = -37.448993 kcal Electronic energy + Delta-G solvation = -21814.373243 eV Core-core repulsion = 18657.931221 eV Total energy + Delta-G solvation = -3156.442022 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.45879 -40.40173 -37.21914 -35.57228 -34.51735 -34.31665 -31.93074 -31.19845 -29.93769 -28.20205 -26.26773 -25.13332 -23.05835 -22.46309 -21.40468 -21.06924 -19.41379 -18.05648 -17.78674 -17.07806 -16.91969 -16.14379 -15.78492 -15.54080 -15.36075 -15.12861 -14.75755 -14.51222 -14.20008 -13.92004 -13.79192 -13.57321 -13.45329 -13.26760 -13.09988 -13.07318 -12.59842 -12.31686 -12.20025 -12.07528 -11.93700 -11.69519 -11.53333 -10.95306 -10.77971 -10.22946 -9.58558 -9.41421 -8.39765 -6.53748 0.39030 1.28559 1.40310 1.56155 1.66290 1.70061 2.37431 2.95062 3.00315 3.17180 3.60522 3.71890 3.77457 3.90633 4.08395 4.13188 4.32538 4.34822 4.44305 4.53262 4.58685 4.60186 4.66015 4.70844 4.72833 4.83885 4.90895 4.99548 5.09074 5.11236 5.14548 5.36295 5.40507 5.45447 5.84955 6.02896 6.07693 6.56408 6.69749 7.16330 7.33212 8.74638 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018999 B = 0.008651 C = 0.007825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.437988 B = 3235.692099 C = 3577.430224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.173 3.827 3 N -0.496 5.496 4 C -0.056 4.056 5 C 0.123 3.877 6 N -0.502 5.502 7 C 0.041 3.959 8 C -0.141 4.141 9 C 0.217 3.783 10 O -0.570 6.570 11 C -0.554 4.554 12 H 0.031 0.969 13 C 0.037 3.963 14 N -0.936 5.936 15 Si 0.925 3.075 16 H -0.257 1.257 17 H -0.304 1.304 18 H -0.216 1.216 19 C 0.049 3.951 20 C -0.048 4.048 21 C -0.083 4.083 22 O -0.215 6.215 23 H 0.103 0.897 24 H 0.118 0.882 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.371 0.629 33 H 0.267 0.733 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.362 4.164 14.396 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.033 4.033 3 N -0.227 5.227 4 C -0.176 4.176 5 C -0.006 4.006 6 N -0.224 5.224 7 C -0.087 4.087 8 C -0.179 4.179 9 C 0.176 3.824 10 O -0.377 6.377 11 C -0.592 4.592 12 H 0.049 0.951 13 C -0.163 4.163 14 N -0.575 5.575 15 Si 0.750 3.250 16 H -0.182 1.182 17 H -0.232 1.232 18 H -0.139 1.139 19 C -0.078 4.078 20 C -0.102 4.102 21 C -0.139 4.139 22 O -0.103 6.103 23 H 0.122 0.878 24 H 0.136 0.864 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.127 0.873 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.219 0.781 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.878 4.644 14.931 15.899 hybrid contribution -0.500 -1.534 -0.943 1.869 sum -3.378 3.110 13.988 14.723 Atomic orbital electron populations 1.20484 0.78169 1.06123 1.06088 1.27275 0.98085 0.78198 0.99757 1.70293 1.01869 1.31000 1.19492 1.22521 0.94535 0.93177 1.07394 1.21000 0.90252 0.97810 0.91509 1.65166 1.43581 1.12222 1.01454 1.22852 0.94519 0.98042 0.93283 1.22914 0.99332 0.98885 0.96809 1.19778 0.81483 0.90482 0.90656 1.86478 1.32435 1.80349 1.38418 1.21604 1.06360 1.02792 1.28402 0.95097 1.25784 1.00689 0.95095 0.94779 1.70076 1.41752 1.10764 1.34883 0.86320 0.80293 0.79581 0.78816 1.18220 1.23243 1.13857 1.23531 0.99688 0.92107 0.92477 1.23612 0.84291 0.95682 1.06600 1.20692 0.89716 0.98573 1.04919 1.84373 1.17011 1.38548 1.70409 0.87843 0.86367 0.88111 0.88018 0.87320 0.93008 0.89100 0.93653 0.90299 0.78122 0.92388 0.91433 0.93244 0.89534 0.90678 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.98 10.51 71.24 0.75 -0.23 16 2 C 0.17 5.38 8.34 88.34 0.74 6.12 16 3 N -0.50 -17.10 10.21 -291.97 -2.98 -20.08 16 4 C -0.06 -1.91 4.73 41.26 0.20 -1.71 16 5 C 0.12 3.81 5.82 85.56 0.50 4.31 16 6 N -0.50 -18.62 5.54 -887.54 -4.91 -23.53 16 7 C 0.04 1.48 6.46 86.45 0.56 2.04 16 8 C -0.14 -5.84 6.25 31.47 0.20 -5.65 16 9 C 0.22 10.23 0.78 -10.34 -0.01 10.22 16 10 O -0.57 -25.85 10.33 -148.98 -1.54 -27.39 16 11 C -0.55 -31.68 8.82 25.60 0.23 -31.45 16 12 H 0.03 1.97 7.81 -2.91 -0.02 1.95 16 13 C 0.04 2.13 5.47 84.65 0.46 2.59 16 14 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 15 Si 0.93 44.42 23.94 68.60 1.64 46.06 16 16 H -0.26 -11.18 5.75 99.48 0.57 -10.60 16 17 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 18 H -0.22 -10.15 5.47 99.48 0.54 -9.61 16 19 C 0.05 2.14 2.83 86.65 0.25 2.39 16 20 C -0.05 -1.64 5.91 24.79 0.15 -1.50 16 21 C -0.08 -2.40 9.67 71.24 0.69 -1.71 16 22 O -0.22 -7.43 10.77 -3.64 -0.04 -7.47 16 23 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.10 2.82 8.08 -2.39 -0.02 2.80 16 27 H 0.11 2.86 7.89 -2.39 -0.02 2.84 16 28 H 0.05 1.93 6.19 -2.39 -0.01 1.91 16 29 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 30 H 0.04 2.02 7.68 -2.39 -0.02 2.00 16 31 H 0.08 2.93 8.08 -2.39 -0.02 2.91 16 32 H 0.37 14.72 9.09 -74.06 -0.67 14.05 16 33 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 34 H 0.07 2.97 4.19 -2.39 -0.01 2.96 16 35 H 0.05 2.31 4.39 -2.39 -0.01 2.30 16 36 H 0.09 2.29 8.14 -2.39 -0.02 2.28 16 37 H 0.07 2.58 4.13 -2.38 -0.01 2.57 16 38 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -72.61 293.34 -2.72 -75.33 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.12 Total: 29.55 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 4.69 Total: -14.59 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -7.60 Total: -101.50 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -1.58 Total: -34.86 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.64 Total: 46.06 kcal Total: -72.61 -2.72 -75.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595559450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.879 kcal (2) G-P(sol) polarization free energy of solvation -72.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds