Wall clock time and date at job start Mon Mar 30 2020 05:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30256 * 125.61628 * 2 1 4 4 C 1.34483 * 108.69649 * 180.19060 * 3 2 1 5 5 C 1.50699 * 126.16570 * 179.82347 * 4 3 2 6 6 N 1.46902 * 109.47241 * 269.69060 * 5 4 3 7 7 C 1.48562 * 111.00054 * 69.87025 * 6 5 4 8 8 C 1.54379 * 104.59317 * 159.04003 * 7 6 5 9 9 C 1.54255 * 105.06343 * 336.14891 * 8 7 6 10 10 O 1.42902 * 110.32273 * 118.89181 * 9 8 7 11 11 C 1.50698 * 110.32818 * 241.10358 * 9 8 7 12 12 H 1.08000 * 119.99422 * 24.93001 * 11 9 8 13 13 C 1.37869 * 120.00141 * 204.93485 * 11 9 8 14 14 N 1.31514 * 120.00031 * 173.94639 * 13 11 9 15 15 Si 1.86795 * 120.00159 * 353.94846 * 13 11 9 16 16 H 1.48504 * 109.47447 * 87.09795 * 15 13 11 17 17 H 1.48504 * 109.47218 * 207.09610 * 15 13 11 18 18 H 1.48499 * 109.47378 * 327.10000 * 15 13 11 19 19 C 1.48557 * 111.00227 * 185.29005 * 6 5 4 20 20 C 1.34333 * 107.67003 * 359.55966 * 4 3 2 21 21 C 1.50695 * 126.44494 * 180.28076 * 20 4 3 22 22 O 1.33964 * 125.61859 * 179.70552 * 2 1 3 23 23 H 1.09000 * 109.46924 * 180.31796 * 1 2 3 24 24 H 1.09000 * 109.47382 * 300.31718 * 1 2 3 25 25 H 1.09000 * 109.47369 * 60.31753 * 1 2 3 26 26 H 1.08998 * 109.47105 * 149.69134 * 5 4 3 27 27 H 1.08998 * 109.46858 * 29.68698 * 5 4 3 28 28 H 1.09002 * 110.40830 * 40.26621 * 7 6 5 29 29 H 1.09000 * 110.41218 * 277.82281 * 7 6 5 30 30 H 1.09003 * 110.32032 * 95.04591 * 8 7 6 31 31 H 1.08998 * 110.32286 * 217.14580 * 8 7 6 32 32 H 0.96696 * 113.99853 * 56.19493 * 10 9 8 33 33 H 0.97005 * 120.00429 * 180.02562 * 14 13 11 34 34 H 1.09004 * 110.40776 * 82.18027 * 19 6 5 35 35 H 1.08999 * 110.40975 * 319.74584 * 19 6 5 36 36 H 1.09003 * 109.46579 * 90.00530 * 21 20 4 37 37 H 1.09000 * 109.47563 * 209.99757 * 21 20 4 38 38 H 1.08994 * 109.47187 * 330.00585 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 -0.0042 5 6 4.7570 1.5726 -0.0095 6 7 5.1481 1.8594 -1.3962 7 6 4.1478 2.7333 -2.0616 8 6 4.9121 3.3709 -3.2417 9 6 6.3988 3.3131 -2.8344 10 8 7.1389 2.5240 -3.7680 11 6 6.9733 4.7038 -2.7516 12 1 6.3238 5.5460 -2.5635 13 6 8.3279 4.9011 -2.9160 14 7 8.8137 6.1223 -2.9628 15 14 9.4732 3.4337 -3.0725 16 1 9.5508 3.0158 -4.4953 17 1 10.8274 3.8093 -2.5924 18 1 8.9520 2.3095 -2.2541 19 6 6.4077 2.6455 -1.4424 20 6 3.5698 -0.6757 0.0029 21 6 4.7937 -1.5549 0.0076 22 8 2.2872 -1.0890 0.0056 23 1 -0.3633 -1.0277 0.0057 24 1 -0.3634 0.5187 0.8871 25 1 -0.3634 0.5089 -0.8928 26 1 5.5823 1.0821 0.5066 27 1 4.5131 2.5052 0.4994 28 1 3.7990 3.5038 -1.3739 29 1 3.3090 2.1410 -2.4274 30 1 4.7468 2.7973 -4.1537 31 1 4.5965 4.4045 -3.3829 32 1 7.0649 2.8258 -4.6837 33 1 9.7667 6.2611 -3.0788 34 1 7.2706 1.9871 -1.3421 35 1 6.4126 3.4022 -0.6579 36 1 5.0887 -1.7614 1.0364 37 1 4.5695 -2.4925 -0.5012 38 1 5.6080 -1.0468 -0.5089 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595559451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:39 Heat of formation + Delta-G solvation = -21.788796 kcal Electronic energy + Delta-G solvation = -20767.840333 eV Core-core repulsion = 17612.077388 eV Total energy + Delta-G solvation = -3155.762945 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.26766 -38.64159 -35.76470 -34.46493 -33.30831 -32.25760 -30.43240 -30.17429 -28.10591 -26.80141 -24.59510 -23.68277 -21.62947 -21.13277 -20.01384 -19.38271 -17.48849 -16.86233 -16.47302 -15.55724 -15.01953 -14.66931 -14.48739 -14.01293 -13.87460 -13.62514 -13.54039 -13.11714 -12.81892 -12.76645 -12.64163 -12.35316 -12.22112 -11.86228 -11.45116 -11.24959 -11.08809 -10.86734 -10.64717 -10.47866 -10.33231 -10.08659 -9.89635 -9.09838 -8.56361 -8.50651 -8.32767 -7.90524 -6.12333 -4.23477 1.49666 2.67700 2.71709 3.51270 3.57032 3.75655 3.99250 4.56661 4.66530 4.79482 4.88576 5.04304 5.14381 5.20019 5.29402 5.36981 5.38278 5.41480 5.53068 5.66674 5.69430 5.82654 5.90698 6.07210 6.11773 6.14647 6.32161 6.38182 6.43077 6.67702 6.70590 6.84787 7.12172 7.27931 7.54684 7.69913 7.84465 8.22673 8.76398 8.91769 9.50594 10.96826 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.033898 B = 0.005047 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.818106 B = 5546.876936 C = 5953.776178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.174 3.826 3 N -0.472 5.472 4 C 0.005 3.995 5 C 0.122 3.878 6 N -0.510 5.510 7 C 0.048 3.952 8 C -0.142 4.142 9 C 0.226 3.774 10 O -0.561 6.561 11 C -0.555 4.555 12 H 0.077 0.923 13 C 0.072 3.928 14 N -0.893 5.893 15 Si 0.949 3.051 16 H -0.293 1.293 17 H -0.328 1.328 18 H -0.268 1.268 19 C 0.045 3.955 20 C -0.037 4.037 21 C -0.066 4.066 22 O -0.207 6.207 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.367 0.633 33 H 0.265 0.735 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.491 -14.052 5.764 19.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.033 4.033 3 N -0.203 5.203 4 C -0.115 4.115 5 C -0.007 4.007 6 N -0.234 5.234 7 C -0.080 4.080 8 C -0.180 4.180 9 C 0.186 3.814 10 O -0.368 6.368 11 C -0.592 4.592 12 H 0.095 0.905 13 C -0.133 4.133 14 N -0.528 5.528 15 Si 0.785 3.215 16 H -0.220 1.220 17 H -0.260 1.260 18 H -0.194 1.194 19 C -0.083 4.083 20 C -0.090 4.090 21 C -0.123 4.123 22 O -0.095 6.095 23 H 0.103 0.897 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.215 0.785 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.401 -14.195 6.045 19.795 hybrid contribution 0.540 -0.135 -0.130 0.572 sum -11.861 -14.330 5.915 19.520 Atomic orbital electron populations 1.20169 0.81610 1.04267 1.04840 1.26114 0.96252 0.78814 1.02071 1.70311 1.01862 1.30260 1.17839 1.21329 0.92659 0.92008 1.05493 1.20466 0.91446 0.96668 0.92112 1.65492 1.04086 1.41311 1.12556 1.22908 0.94667 0.94263 0.96190 1.23063 0.97799 1.00156 0.97029 1.19809 0.86975 0.89321 0.85314 1.86131 1.71889 1.58793 1.20002 1.21414 0.93991 0.91371 1.52419 0.90517 1.25160 0.98654 0.96665 0.92787 1.69983 1.13860 1.21174 1.47825 0.85690 0.75882 0.81455 0.78467 1.22038 1.25978 1.19360 1.23534 0.90927 0.95283 0.98507 1.23153 0.83512 0.95129 1.07220 1.20291 0.90554 0.98179 1.03285 1.84344 1.16782 1.37783 1.70591 0.89743 0.88814 0.88728 0.89521 0.92976 0.94101 0.91849 0.92225 0.91059 0.78537 0.92578 0.90261 0.92479 0.90248 0.90654 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.17 2.33 8.34 -12.95 -0.11 2.22 16 3 N -0.47 -7.63 11.29 -7.36 -0.08 -7.71 16 4 C 0.01 0.08 6.10 -82.81 -0.51 -0.42 16 5 C 0.12 2.02 4.98 -4.98 -0.02 2.00 16 6 N -0.51 -9.73 5.36 -231.41 -1.24 -10.97 16 7 C 0.05 0.91 5.98 -2.18 -0.01 0.90 16 8 C -0.14 -2.90 6.40 -25.35 -0.16 -3.07 16 9 C 0.23 5.23 0.90 -90.39 -0.08 5.15 16 10 O -0.56 -12.77 8.38 -35.23 -0.30 -13.07 16 11 C -0.55 -15.16 8.58 -34.44 -0.30 -15.46 16 12 H 0.08 2.29 7.85 -52.49 -0.41 1.87 16 13 C 0.07 2.03 5.46 -17.82 -0.10 1.94 16 14 N -0.89 -27.00 13.96 55.43 0.77 -26.23 16 15 Si 0.95 23.90 24.86 -169.99 -4.23 19.68 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 17 H -0.33 -8.44 7.11 56.52 0.40 -8.04 16 18 H -0.27 -6.61 5.24 56.52 0.30 -6.31 16 19 C 0.04 0.96 5.29 -2.18 -0.01 0.95 16 20 C -0.04 -0.53 7.39 -35.69 -0.26 -0.79 16 21 C -0.07 -0.72 10.04 36.00 0.36 -0.36 16 22 O -0.21 -2.91 10.78 5.36 0.06 -2.85 16 23 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 1.27 7.78 -51.93 -0.40 0.86 16 27 H 0.05 0.89 7.88 -51.93 -0.41 0.48 16 28 H 0.04 0.80 7.82 -51.93 -0.41 0.39 16 29 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 30 H 0.06 1.14 7.98 -51.93 -0.41 0.72 16 31 H 0.07 1.48 7.57 -51.93 -0.39 1.09 16 32 H 0.37 7.40 8.99 45.56 0.41 7.81 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.08 1.76 6.48 -51.93 -0.34 1.42 16 35 H 0.06 1.26 7.71 -51.93 -0.40 0.86 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.17 7.79 -51.93 -0.40 0.76 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -33.18 309.05 -6.12 -39.31 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.95 Total: 4.16 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.82 Total: -6.97 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.55 Total: -44.91 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.24 Total: -15.92 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -4.23 Total: 19.68 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.18 -6.12 -39.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595559451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.520 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds